Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027077.1

Orthogroup ID

OG0004056

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 2565

Gene Structure 2565 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027077.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

atggatctcatcctcacccttggtggcactggatttaccccacgagatgtaactccagaagcaaccaaagagttgattgagaaagaaacacctggtcttcttcttgtcatgatgcaagagagtttaaaggtgacaccatttgctatgctctcccgtgctgcagcaggaataagagggtcaacattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006464 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008940 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009144 GO:0009150 GO:0009199 GO:0009205 GO:0009259 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016491 GO:0016661 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0018315 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0030151 GO:0032324 GO:0032870 GO:0034641 GO:0036211 GO:0042040 GO:0042221 GO:0042278 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043545 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046483 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051189 GO:0051716 GO:0055086 GO:0055114 GO:0061598 GO:0061599 GO:0065007 GO:0070566 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 ko04727 map00790 map01100 map04727

Pfam Domains

Protein Families

MoCF_biosynth MoeA_C MoeA_N

Protein Analysis

62

Amino Acids

6.62

Weight (kDa)

5.14

Isoelectric Point (pI)

23.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20990 AT5G20990 AT5G20990
fragaria_vesca	FvH4_3g26260 FvH4_3g26260 FvH4_3g26260 FvH4_3g26260 FvH4_3g26260
malus_domestica	MD11G1181200.v1.1
prunus_persica	Prupe.6G153900_v2.0.a1 Prupe.6G153900_v2.0.a1
pyrus_communis	pycom03g11700 pycom11g15630
rosa_chinensis	RchiOBHm_Chr5g0048741
rosa_laevigata	RLG00000034556
rosa_multiflora	Rmu_co8087680.1_g000001 Rmu_sc0003675.1_g000001 Rmu_sc0006432.1_g000010 Rmu_sc0006432.1_g000011 Rmu_sc0011208.1_g000008 Rmu_sc0027077.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033080
rosa_rugosa	Rorug05G0240900 Rorug05G0257800 Rorug05G0257900 Rorug05G0258000
rosa_samantha	Rh5AG320700 Rh5BG330500 Rh5CG356400 Rh5CG367600 Rh5DG341700
rosa_wichuraiana	Rw5G030150 Rw5G031200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	12
AjnI	CCWGG	1 cut(s)	91
AlwI	GGATC	1 cut(s)	12
ApeKI	GCWGC	2 cut(s)	158, 161
AsuHPI	GGTGA	2 cut(s)	7, 142
BauI	CACGAG	1 cut(s)	42
BbsI	GAAGAC	1 cut(s)	89
BbvI	GCAGC	2 cut(s)	145, 173
BciT130I	CCWGG	1 cut(s)	93
BfmI	CTRYAG	1 cut(s)	159
BisI	GCNGC	2 cut(s)	159, 162
BlsI	GCNGC	2 cut(s)	160, 163
Bme1390I	CCNGG	1 cut(s)	93
BmrFI	CCNGG	1 cut(s)	93
BmsI	GCATC	1 cut(s)	102
BpiI	GAAGAC	1 cut(s)	89
BpmI	CTGGAG	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	19
Bse1I	ACTGG	1 cut(s)	34
BseBI	CCWGG	1 cut(s)	93
BseDI	CCNNGG	1 cut(s)	19
BseGI	GGATG	1 cut(s)	9
BseNI	ACTGG	1 cut(s)	34
BseXI	GCAGC	2 cut(s)	145, 173
Bsp143I	GATC	1 cut(s)	4
BspHI	TCATGA	1 cut(s)	108
BspMAI	CTGCAG	1 cut(s)	163
BspPI	GGATC	1 cut(s)	12
BsrI	ACTGG	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	19
BssMI	GATC	1 cut(s)	4
BssSI	CACGAG	1 cut(s)	42
BssT1I	CCWWGG	1 cut(s)	19
Bst2BI	CACGAG	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	93
BstF5I	GGATG	1 cut(s)	9
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstNI	CCWGG	1 cut(s)	93
BstSCI	CCNGG	1 cut(s)	91
BstSFI	CTRYAG	1 cut(s)	159
BstV1I	GCAGC	2 cut(s)	145, 173
BstV2I	GAAGAC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	4
BstYI	RGATCY	1 cut(s)	4
BtsCI	GGATG	1 cut(s)	9
BtsIMutI	CAGTG	1 cut(s)	27
CciI	TCATGA	1 cut(s)	108
CsiI	ACCWGGT	1 cut(s)	91
CviAII	CATG	1 cut(s)	109
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
DraI	TTTAAA	1 cut(s)	126
Eco130I	CCWWGG	1 cut(s)	19
EcoRII	CCWGG	1 cut(s)	91
EcoT14I	CCWWGG	1 cut(s)	19
ErhI	CCWWGG	1 cut(s)	19
FaeI	CATG	1 cut(s)	112
FaiI	YATR	2 cut(s)	110, 146
FatI	CATG	1 cut(s)	108
Fnu4HI	GCNGC	2 cut(s)	159, 162
Fsp4HI	GCNGC	2 cut(s)	159, 162
GluI	GCNGC	2 cut(s)	159, 162
GsuI	CTGGAG	1 cut(s)	39
Hin1II	CATG	1 cut(s)	112
HincII	GTYRAC	1 cut(s)	180
HindII	GTYRAC	1 cut(s)	180
HphI	GGTGA	2 cut(s)	7, 142
Hpy166II	GTNNAC	1 cut(s)	180
Hpy188III	TCNNGA	2 cut(s)	56, 109
Hpy8I	GTNNAC	1 cut(s)	180
HpyCH4V	TGCA	2 cut(s)	115, 161
Hsp92II	CATG	1 cut(s)	112
Kzo9I	GATC	1 cut(s)	4
LpnPI	CCDG	5 cut(s)	15, 69, 78, 105, 150
Lsp1109I	GCAGC	2 cut(s)	145, 173
LweI	GCATC	1 cut(s)	102
MabI	ACCWGGT	1 cut(s)	91
MaeIII	GTNAC	2 cut(s)	49, 130
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	2 cut(s)	89, 92
MflI	RGATCY	1 cut(s)	4
MnlI	CCTC	2 cut(s)	23, 167
MseI	TTAA	1 cut(s)	125
MspR9I	CCNGG	1 cut(s)	93
MvaI	CCWGG	1 cut(s)	93
NdeII	GATC	1 cut(s)	4
NlaIII	CATG	1 cut(s)	112
NmuCI	GTSAC	1 cut(s)	130
PagI	TCATGA	1 cut(s)	108
PkrI	GCNGC	2 cut(s)	160, 163
Psp6I	CCWGG	1 cut(s)	91
PspGI	CCWGG	1 cut(s)	91
PstI	CTGCAG	1 cut(s)	163
PsuI	RGATCY	1 cut(s)	4
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	2 cut(s)	159, 162
Sau3AI	GATC	1 cut(s)	4
ScrFI	CCNGG	1 cut(s)	93
SetI	ASST	2 cut(s)	94, 132
SexAI	ACCWGGT	1 cut(s)	91
SfaNI	GCATC	1 cut(s)	102
SfcI	CTRYAG	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	91
StyI	CCWWGG	1 cut(s)	19
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TscAI	CASTG	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	130
TseI	GCWGC	2 cut(s)	158, 161
Tsp45I	GTSAC	1 cut(s)	130
TspRI	CASTG	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.