Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0004056

Physical Location & Seq

Genomic Coordinates Forward (+)

11654894 .. 11657223

Gene Structure 2330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g11700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGACATTTTGTGATGGAAAAAAAAAAAAAAATAATCAACATCCCGTGAGATTTGTAGCTATTGGTTTCTGGGCGATTGACGATTTTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGACGAGAGAGGATAGCAGCAGCAGCGAAGGCACCGCCATCTCAGTAGAGGACGCTCTTGAAACAGTTCTGAGAGTGGTCCATCGCCTGCCGCTCCTCACTGTGCCCCTTCACGATGCGGCTGGGAAGGTGCTGGCCGAGGACATTGGCGCGCGTGACCCTCTGCCGCCGTACCCTGGTTCGATGAAGGATGGGTACGCAGTGGTGGCTTCAGATGGGCCTGGCGAGTATCCTGTAATCGCTGAAGCAAGAGCTGGCAACGATGGACTTGGCATCACCGTCACTCCTGGAACTGTAGCCTATGTTACCACTGGAGGACCAATACCTGATGGTGCTGATGCAGTGGTACAAGTTGAGGACACCGAAGAAATTGATAAGCATTCACTTGATTCAAGGAAAGTAAGAATATTTGTACCAACAAGCAAAGGAGTAGATATTCGTCCAGTGGGTTGTGAAATTGAAACAGATGCTGTAGTATTGACATCTGGGCAAAGAATTGGTGCTTCAGAAATTGGTTTGCTTGCTACTGTGGGAGTGACAATGGTGAAGGTATATCCCACCCCAACAATTGGTGTGCTTTCCACAGGAGATGAACTGGTGGAGCCAACGACAGGCTGTTTAAATCGTGGCCAGGTACTGCAAGCTACTGAAATCTCTCTCTCTCTTTCTCTCTCTCTATATATATATATATATATATATATATATAAGGTCCTTCACTTTGTAGTACAAAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006139 GO:0006163 GO:0006464 GO:0006725 GO:0006732 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008940 GO:0009058 GO:0009116 GO:0009117 GO:0009119 GO:0009141 GO:0009144 GO:0009150 GO:0009199 GO:0009205 GO:0009259 GO:0009719 GO:0009725 GO:0009733 GO:0009734 GO:0009755 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016491 GO:0016661 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0018315 GO:0019538 GO:0019637 GO:0019693 GO:0023052 GO:0030151 GO:0032324 GO:0032870 GO:0034641 GO:0036211 GO:0042040 GO:0042221 GO:0042278 GO:0043167 GO:0043169 GO:0043170 GO:0043412 GO:0043545 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046039 GO:0046128 GO:0046483 GO:0046872 GO:0046914 GO:0050789 GO:0050794 GO:0050896 GO:0051186 GO:0051188 GO:0051189 GO:0051716 GO:0055086 GO:0055114 GO:0061598 GO:0061599 GO:0065007 GO:0070566 GO:0070887 GO:0071310 GO:0071365 GO:0071495 GO:0071704 GO:0072521 GO:0090407 GO:1901068 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

ko00790 ko01100 ko04727 map00790 map01100 map04727

Pfam Domains

Protein Families

MoCF_biosynth MoeA_C MoeA_N

Protein Analysis

283

Amino Acids

29.58

Weight (kDa)

4.84

Isoelectric Point (pI)

29.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MoeA_N	PF03453	52 - 216	3.9e-39	MoeA N-terminal region (domain I and II)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G20990 AT5G20990 AT5G20990
fragaria_vesca	FvH4_3g26260 FvH4_3g26260 FvH4_3g26260 FvH4_3g26260 FvH4_3g26260
malus_domestica	MD11G1181200.v1.1
prunus_persica	Prupe.6G153900_v2.0.a1 Prupe.6G153900_v2.0.a1
pyrus_communis	pycom03g11700 pycom11g15630
rosa_chinensis	RchiOBHm_Chr5g0048741
rosa_laevigata	RLG00000034556
rosa_multiflora	Rmu_co8087680.1_g000001 Rmu_sc0003675.1_g000001 Rmu_sc0006432.1_g000010 Rmu_sc0006432.1_g000011 Rmu_sc0011208.1_g000008 Rmu_sc0027077.1_g000001
rosa_roxburghii	Rroxscaffold_1G00033080
rosa_rugosa	Rorug05G0240900 Rorug05G0257800 Rorug05G0257900 Rorug05G0258000
rosa_samantha	Rh5AG320700 Rh5BG330500 Rh5CG356400 Rh5CG367600 Rh5DG341700
rosa_wichuraiana	Rw5G030150 Rw5G031200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	146
AccB7I	CCANNNNNTGG	1 cut(s)	683
AccBSI	CCGCTC	1 cut(s)	208
AccII	CGCG	2 cut(s)	266, 268
AciI	CCGC	4 cut(s)	150, 206, 233, 281
AcoI	YGGCCR	2 cut(s)	249, 742
AcuI	CTGAAG	3 cut(s)	309, 378, 603
AfaI	GTAC	6 cut(s)	287, 311, 462, 528, 750, 840
AfiI	CCNNNNNNNGG	3 cut(s)	290, 683, 725
AgsI	TTSAA	3 cut(s)	176, 507, 575
AjnI	CCWGG	4 cut(s)	289, 334, 400, 744
AluBI	AGCT	3 cut(s)	59, 368, 758
AluI	AGCT	3 cut(s)	59, 368, 758
AlwNI	CAGNNNCTG	2 cut(s)	584, 751
AoxI	GGCC	3 cut(s)	249, 332, 742
ApeKI	GCWGC	3 cut(s)	132, 135, 138
Asp700I	GAANNNNTTC	1 cut(s)	180
AspLEI	GCGC	2 cut(s)	266, 268
AspS9I	GGNCC	4 cut(s)	193, 332, 431, 823
AsuHPI	GGTGA	2 cut(s)	382, 670
AvaII	GGWCC	3 cut(s)	193, 431, 823
BaeGI	GKGCMC	1 cut(s)	222
BalI	TGGCCA	1 cut(s)	744
BanI	GGYRCC	1 cut(s)	146
BarI	GAAGNNNNNNTAC	2 cut(s)	293, 325
BbvI	GCAGC	3 cut(s)	144, 147, 150
BccI	CCATC	7 cut(s)	8, 161, 204, 299, 323, 371, 437
BceAI	ACGGC	1 cut(s)	268
BciT130I	CCWGG	4 cut(s)	291, 336, 402, 746
BciVI	GTATCC	1 cut(s)	354
BfmI	CTRYAG	2 cut(s)	408, 585
BfuI	GTATCC	1 cut(s)	354
BisI	GCNGC	6 cut(s)	133, 136, 139, 206, 234, 281
BlsI	GCNGC	6 cut(s)	134, 137, 140, 207, 235, 282
Bme1390I	CCNGG	4 cut(s)	291, 336, 402, 746
Bme18I	GGWCC	3 cut(s)	193, 431, 823
BmgT120I	GGNCC	4 cut(s)	193, 332, 431, 823
BmiI	GGNNCC	2 cut(s)	148, 717
BmrFI	CCNGG	4 cut(s)	291, 336, 402, 746
BmsI	GCATC	4 cut(s)	220, 396, 442, 571
BpmI	CTGGAG	1 cut(s)	447
BsaJI	CCNNGG	2 cut(s)	252, 289
BsaXI	ACNNNNNCTCC	2 cut(s)	382, 412
Bsc4I	CCNNNNNNNGG	3 cut(s)	290, 683, 725
Bse1I	ACTGG	3 cut(s)	430, 557, 714
BseBI	CCWGG	4 cut(s)	291, 336, 402, 746
BseDI	CCNNGG	2 cut(s)	252, 289
BseGI	GGATG	2 cut(s)	40, 310
BseLI	CCNNNNNNNGG	3 cut(s)	290, 683, 725
BseMII	CTCAG	2 cut(s)	171, 176
BseNI	ACTGG	3 cut(s)	430, 557, 714
BsePI	GCGCGC	1 cut(s)	264
BseRI	GAGGAG	1 cut(s)	200
BseSI	GKGCMC	1 cut(s)	222
BseXI	GCAGC	3 cut(s)	144, 147, 150
BseYI	CCCAGC	1 cut(s)	236
Bsh1236I	CGCG	2 cut(s)	266, 268
BshFI	GGCC	3 cut(s)	251, 334, 744
BshNI	GGYRCC	1 cut(s)	146
BslFI	GGGAC	1 cut(s)	130
BslI	CCNNNNNNNGG	3 cut(s)	290, 683, 725
BsmFI	GGGAC	1 cut(s)	130
BsmI	GAATGC	1 cut(s)	493
BsnI	GGCC	3 cut(s)	251, 334, 744
Bsp1286I	GDGCHC	1 cut(s)	222
BspACI	CCGC	4 cut(s)	150, 206, 233, 281
BspANI	GGCC	3 cut(s)	251, 334, 744
BspCNI	CTCAG	2 cut(s)	170, 177
BspFNI	CGCG	2 cut(s)	266, 268
BspLI	GGNNCC	2 cut(s)	148, 717
BspT107I	GGYRCC	1 cut(s)	146
BsrBI	CCGCTC	1 cut(s)	208
BsrI	ACTGG	3 cut(s)	430, 557, 714
BssECI	CCNNGG	2 cut(s)	252, 289
BssHII	GCGCGC	1 cut(s)	264
Bst2UI	CCWGG	4 cut(s)	291, 336, 402, 746
Bst4CI	ACNGT	5 cut(s)	181, 217, 394, 409, 643
BstC8I	GCNNGC	6 cut(s)	203, 249, 266, 370, 636, 756
BstDEI	CTNAG	2 cut(s)	157, 185
BstF5I	GGATG	2 cut(s)	40, 310
BstFNI	CGCG	2 cut(s)	266, 268
BstHHI	GCGC	2 cut(s)	266, 268
BstMWI	GCNNNNNNNGC	3 cut(s)	138, 144, 320
BstNI	CCWGG	4 cut(s)	291, 336, 402, 746
BstSCI	CCNGG	4 cut(s)	289, 334, 400, 744
BstSFI	CTRYAG	2 cut(s)	408, 585
BstSLI	GKGCMC	1 cut(s)	222
BstUI	CGCG	2 cut(s)	266, 268
BstV1I	GCAGC	3 cut(s)	144, 147, 150
BsuI	GTATCC	1 cut(s)	354
BsuRI	GGCC	3 cut(s)	251, 334, 744
BtgZI	GCGATG	1 cut(s)	182
BtsCI	GGATG	2 cut(s)	40, 310
BtsI	GCAGTG	2 cut(s)	321, 462
BtsIMutI	CAGTG	5 cut(s)	213, 321, 423, 462, 564
Cac8I	GCNNGC	6 cut(s)	203, 249, 266, 370, 636, 756
CaiI	CAGNNNCTG	2 cut(s)	584, 751
CfoI	GCGC	2 cut(s)	266, 268
Cfr13I	GGNCC	4 cut(s)	193, 332, 431, 823
CseI	GACGC	1 cut(s)	176
Csp6I	GTAC	6 cut(s)	286, 310, 461, 527, 749, 839
CviQI	GTAC	6 cut(s)	286, 310, 461, 527, 749, 839
DdeI	CTNAG	2 cut(s)	157, 185
DraI	TTTAAA	1 cut(s)	735
EaeI	YGGCCR	2 cut(s)	249, 742
Eco47I	GGWCC	3 cut(s)	193, 431, 823
Eco57I	CTGAAG	3 cut(s)	309, 378, 603
EcoO109I	RGGNCCY	1 cut(s)	823
EcoRII	CCWGG	4 cut(s)	289, 334, 400, 744
FaqI	GGGAC	1 cut(s)	130
Fnu4HI	GCNGC	6 cut(s)	133, 136, 139, 206, 234, 281
FokI	GGATG	2 cut(s)	27, 317
Fsp4HI	GCNGC	6 cut(s)	133, 136, 139, 206, 234, 281
GlaI	GCGC	2 cut(s)	265, 267
GluI	GCNGC	6 cut(s)	133, 136, 139, 206, 234, 281
GsaI	CCCAGC	1 cut(s)	240
GsuI	CTGGAG	1 cut(s)	447
HaeIII	GGCC	3 cut(s)	251, 334, 744
HgaI	GACGC	1 cut(s)	176
HhaI	GCGC	2 cut(s)	266, 268
Hin6I	GCGC	2 cut(s)	264, 266
HinP1I	GCGC	2 cut(s)	264, 266
HinfI	GANTC	1 cut(s)	503
HphI	GGTGA	2 cut(s)	382, 670
Hpy188I	TCNGA	3 cut(s)	186, 328, 622
Hpy188III	TCNNGA	2 cut(s)	173, 227
HpyAV	CCTTC	6 cut(s)	137, 233, 235, 295, 655, 836
HpyCH4III	ACNGT	5 cut(s)	181, 217, 394, 409, 643
HpyCH4V	TGCA	2 cut(s)	455, 754
HpyF10VI	GCNNNNNNNGC	3 cut(s)	138, 144, 320
HpyF3I	CTNAG	2 cut(s)	157, 185
HspAI	GCGC	2 cut(s)	264, 266
LmnI	GCTCC	2 cut(s)	213, 715
Lsp1109I	GCAGC	3 cut(s)	144, 147, 150
LweI	GCATC	4 cut(s)	220, 396, 442, 571
MaeIII	GTNAC	4 cut(s)	269, 394, 418, 649
MbiI	CCGCTC	1 cut(s)	208
MboII	GAAGA	1 cut(s)	491
MfeI	CAATTG	1 cut(s)	681
MhlI	GDGCHC	1 cut(s)	222
MlsI	TGGCCA	1 cut(s)	744
MluCI	AATT	5 cut(s)	483, 570, 609, 624, 681
MluNI	TGGCCA	1 cut(s)	744
MnlI	CCTC	7 cut(s)	118, 157, 221, 247, 285, 422, 463
Mox20I	TGGCCA	1 cut(s)	744
MroXI	GAANNNNTTC	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	744
MseI	TTAA	1 cut(s)	734
Msp20I	TGGCCA	1 cut(s)	744
MspR9I	CCNGG	4 cut(s)	291, 336, 402, 746
MunI	CAATTG	1 cut(s)	681
Mva1269I	GAATGC	1 cut(s)	493
MvaI	CCWGG	4 cut(s)	291, 336, 402, 746
MvnI	CGCG	2 cut(s)	266, 268
MwoI	GCNNNNNNNGC	3 cut(s)	138, 144, 320
NlaIV	GGNNCC	2 cut(s)	148, 717
NmeAIII	GCCGAG	1 cut(s)	277
NmuCI	GTSAC	3 cut(s)	269, 394, 649
PauI	GCGCGC	1 cut(s)	264
PctI	GAATGC	1 cut(s)	493
PdmI	GAANNNNTTC	1 cut(s)	180
PfeI	GAWTC	1 cut(s)	503
PflMI	CCANNNNNTGG	1 cut(s)	683
PfoI	TCCNGGA	1 cut(s)	400
PkrI	GCNGC	6 cut(s)	134, 137, 140, 207, 235, 282
PpuMI	RGGWCCY	1 cut(s)	823
Psp5II	RGGWCCY	1 cut(s)	823
Psp6I	CCWGG	4 cut(s)	289, 334, 400, 744
PspFI	CCCAGC	1 cut(s)	236
PspGI	CCWGG	4 cut(s)	289, 334, 400, 744
PspN4I	GGNNCC	2 cut(s)	148, 717
PspPI	GGNCC	4 cut(s)	193, 332, 431, 823
PspPPI	RGGWCCY	1 cut(s)	823
PstNI	CAGNNNCTG	2 cut(s)	584, 751
PteI	GCGCGC	1 cut(s)	264
RsaI	GTAC	6 cut(s)	287, 311, 462, 528, 750, 840
RsaNI	GTAC	6 cut(s)	286, 310, 461, 527, 749, 839
SaqAI	TTAA	1 cut(s)	734
SatI	GCNGC	6 cut(s)	133, 136, 139, 206, 234, 281
Sau96I	GGNCC	4 cut(s)	193, 332, 431, 823
ScrFI	CCNGG	4 cut(s)	291, 336, 402, 746
SduI	GDGCHC	1 cut(s)	222
SetI	ASST	8 cut(s)	61, 246, 370, 442, 666, 750, 760, 825
SfaNI	GCATC	4 cut(s)	220, 396, 442, 571
SfcI	CTRYAG	2 cut(s)	408, 585
SinI	GGWCC	3 cut(s)	193, 431, 823
Sse9I	AATT	5 cut(s)	483, 570, 609, 624, 681
SsiI	CCGC	4 cut(s)	150, 206, 233, 281
SspI	AATATT	1 cut(s)	522
StyD4I	CCNGG	4 cut(s)	289, 334, 400, 744
TaaI	ACNGT	5 cut(s)	181, 217, 394, 409, 643
TaqI	TCGA	1 cut(s)	296
TasI	AATT	5 cut(s)	483, 570, 609, 624, 681
TatI	WGTACW	1 cut(s)	838
TauI	GCSGC	3 cut(s)	208, 236, 283
TfiI	GAWTC	1 cut(s)	503
Tru1I	TTAA	1 cut(s)	734
Tru9I	TTAA	1 cut(s)	734
TscAI	CASTG	5 cut(s)	220, 321, 430, 462, 564
TseFI	GTSAC	3 cut(s)	269, 394, 649
TseI	GCWGC	3 cut(s)	132, 135, 138
Tsp45I	GTSAC	3 cut(s)	269, 394, 649
TspDTI	ATGAA	2 cut(s)	314, 720
TspRI	CASTG	5 cut(s)	220, 321, 430, 462, 564
Van91I	CCANNNNNTGG	1 cut(s)	683
VpaK11BI	GGWCC	3 cut(s)	193, 431, 823
XmnI	GAANNNNTTC	1 cut(s)	180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.