Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0003862

Physical Location & Seq

Genomic Coordinates Forward (+)

21461555 .. 21463544

Gene Structure 1990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g28470.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGGAGGCCACGACTCCTGGTGGAGGTCGGCGCTCGAATTCGTCAAACATGTCGATTGGGTCTCTCTTCAGCTCCCCTCAATTTGCCCCCAAAATCTTCCCGGCAAGCGATAACAGAACAAACCCTAACCCTACCCTCAACTTGTTGAATTGGCATAGAAGCCCCTCCAGAACTAGAAATATGAGCATTGAGTCCGGGAATGGAGGACTGGGACAATCTAAACTCGATGGAGTCGGTGACAGAGACGCCGTCATCGTCGTCGACCATGGTTCGCGCCGTAAGGAATCAAACCTCATGCTAAATGAGTTTGTGGACATGTTTAGGGAGAGAACTGGGTATGCTATAGTGGAGCCTGCTCATATGGAGTTGGCAGAACCTTCAATTCATGACGCGTTCAATTCTTGTGTTGAGCAAGGTGCCAATCGTATAATTGTGAGTCCATTTTTCCTCTTACCCGGAAGACATTGGAACCAGGACATACCATCTCTAACAGCTGAAGCTGCAAAAAAGCATGGGGTATCATATATGGTGACTGCGCCTCTTGGACTCCACCCGCTACTTGTGGATCGGACACTGTTGTTGCACAATTTTTTTCTGAAGCTTTGCTCAGAGCTCTATTGCTGTTTAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0018130 GO:0019354 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046156 GO:0046483 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0051266 GO:0051536 GO:0051540 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

CbiX

Protein Analysis

211

Amino Acids

23.16

Weight (kDa)

7.09

Isoelectric Point (pI)

52.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CbiX	PF01903	89 - 189	1.6e-30	CbiX

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50170 AT1G50170 AT1G50170
fragaria_vesca	FvH4_3g28470 FvH4_3g28470 FvH4_6g51400
malus_domestica	MD09G1028700.v1.1 MD17G1030300.v1.1
prunus_persica	Prupe.3G207400_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289700_v2.0.a1
pyrus_communis	pycom111g02280 pycom17g02770
rosa_chinensis	RchiOBHm_Chr1g0351301 RchiOBHm_Chr2g0173081 RchiOBHm_Chr7g0219921 RchiOBHm_Chr7g0228061 RchiOBHm_Chr7g0228091
rosa_laevigata	RLG00000022156
rosa_multiflora	Rmu_sc0011236.1_g000008 Rmu_sc0031614.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079260
rosa_rugosa	Rorug02G0565000
rosa_samantha	Rh2AG644900 Rh2BG655700 Rh2CG620800 Rh2DG669000 Rh7DG395300
rosa_wichuraiana	Rw2G052970 Rw7G033220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	416
AccI	GTMKAC	1 cut(s)	261
AccII	CGCG	2 cut(s)	274, 392
AciI	CCGC	1 cut(s)	554
AclWI	GGATC	1 cut(s)	573
AcsI	RAATTY	1 cut(s)	37
AcuI	CTGAAG	3 cut(s)	52, 516, 617
AcyI	GRCGYC	1 cut(s)	246
AfiI	CCNNNNNNNGG	1 cut(s)	23
AflIII	ACRYGT	3 cut(s)	48, 315, 390
AgsI	TTSAA	3 cut(s)	148, 381, 397
AjnI	CCWGG	2 cut(s)	16, 471
AluBI	AGCT	5 cut(s)	72, 494, 500, 601, 613
AluI	AGCT	5 cut(s)	72, 494, 500, 601, 613
Alw21I	GWGCWC	1 cut(s)	615
Alw26I	GTCTC	2 cut(s)	66, 237
AlwI	GGATC	1 cut(s)	573
AoxI	GGCC	1 cut(s)	6
ApeKI	GCWGC	1 cut(s)	500
ApoI	RAATTY	1 cut(s)	37
AspLEI	GCGC	3 cut(s)	33, 276, 538
AsuC2I	CCSGG	3 cut(s)	101, 196, 456
AsuHPI	GGTGA	2 cut(s)	248, 541
BanI	GGYRCC	1 cut(s)	416
BanII	GRGCYC	1 cut(s)	615
BbsI	GAAGAC	1 cut(s)	466
Bbv12I	GWGCWC	1 cut(s)	615
BbvI	GCAGC	1 cut(s)	487
BccI	CCATC	2 cut(s)	221, 490
BceAI	ACGGC	2 cut(s)	233, 261
BciT130I	CCWGG	2 cut(s)	18, 473
BcnI	CCSGG	3 cut(s)	101, 196, 456
BcoDI	GTCTC	2 cut(s)	66, 237
BfaI	CTAG	1 cut(s)	174
BfmI	CTRYAG	1 cut(s)	342
BfoI	RGCGCY	1 cut(s)	34
BisI	GCNGC	1 cut(s)	501
BlsI	GCNGC	1 cut(s)	502
Bme1390I	CCNGG	5 cut(s)	18, 101, 196, 456, 473
BmiI	GGNNCC	3 cut(s)	351, 418, 470
BmrFI	CCNGG	5 cut(s)	18, 101, 196, 456, 473
BmrI	ACTGGG	2 cut(s)	218, 342
BmuI	ACTGGG	2 cut(s)	218, 342
BpiI	GAAGAC	1 cut(s)	466
BpmI	CTGGAG	1 cut(s)	151
BpuMI	CCSGG	3 cut(s)	101, 196, 456
BsaHI	GRCGYC	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	66
BsaJI	CCNNGG	1 cut(s)	265
Bsc4I	CCNNNNNNNGG	1 cut(s)	23
Bse1I	ACTGG	2 cut(s)	213, 337
BseBI	CCWGG	2 cut(s)	18, 473
BseDI	CCNNGG	1 cut(s)	265
BseLI	CCNNNNNNNGG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	621
BseNI	ACTGG	2 cut(s)	213, 337
BseXI	GCAGC	1 cut(s)	487
Bsh1236I	CGCG	2 cut(s)	274, 392
BshFI	GGCC	1 cut(s)	8
BshNI	GGYRCC	1 cut(s)	416
BsiHKAI	GWGCWC	1 cut(s)	615
BsiSI	CCGG	3 cut(s)	101, 195, 456
BslFI	GGGAC	1 cut(s)	225
BslI	CCNNNNNNNGG	1 cut(s)	23
BsmAI	GTCTC	2 cut(s)	66, 237
BsmBI	CGTCTC	1 cut(s)	237
BsmFI	GGGAC	1 cut(s)	225
BsnI	GGCC	1 cut(s)	8
Bso31I	GGTCTC	1 cut(s)	66
Bsp1286I	GDGCHC	1 cut(s)	615
Bsp143I	GATC	1 cut(s)	565
Bsp19I	CCATGG	1 cut(s)	265
BspACI	CCGC	1 cut(s)	554
BspANI	GGCC	1 cut(s)	8
BspCNI	CTCAG	1 cut(s)	620
BspFNI	CGCG	2 cut(s)	274, 392
BspHI	TCATGA	1 cut(s)	385
BspLI	GGNNCC	3 cut(s)	351, 418, 470
BspPI	GGATC	1 cut(s)	573
BspT107I	GGYRCC	1 cut(s)	416
BspTNI	GGTCTC	1 cut(s)	66
BsrI	ACTGG	2 cut(s)	213, 337
BssECI	CCNNGG	1 cut(s)	265
BssMI	GATC	1 cut(s)	565
BssNI	GRCGYC	1 cut(s)	246
BssT1I	CCWWGG	1 cut(s)	265
Bst2UI	CCWGG	2 cut(s)	18, 473
Bst4CI	ACNGT	1 cut(s)	576
Bst6I	CTCTTC	1 cut(s)	71
BstACI	GRCGYC	1 cut(s)	246
BstC8I	GCNNGC	2 cut(s)	106, 354
BstDEI	CTNAG	1 cut(s)	607
BstDSI	CCRYGG	1 cut(s)	265
BstENI	CCTNNNNNAGG	1 cut(s)	21
BstFNI	CGCG	2 cut(s)	274, 392
BstH2I	RGCGCY	1 cut(s)	34
BstHHI	GCGC	3 cut(s)	33, 276, 538
BstKTI	GATC	1 cut(s)	568
BstMAI	GTCTC	2 cut(s)	66, 237
BstMBI	GATC	1 cut(s)	565
BstMWI	GCNNNNNNNGC	1 cut(s)	500
BstNI	CCWGG	2 cut(s)	18, 473
BstNSI	RCATGY	2 cut(s)	52, 319
BstSCI	CCNGG	5 cut(s)	16, 99, 194, 454, 471
BstSFI	CTRYAG	1 cut(s)	342
BstUI	CGCG	2 cut(s)	274, 392
BstV1I	GCAGC	1 cut(s)	487
BstV2I	GAAGAC	1 cut(s)	466
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	265
BtsIMutI	CAGTG	1 cut(s)	572
Cac8I	GCNNGC	2 cut(s)	106, 354
CciI	TCATGA	1 cut(s)	385
CfoI	GCGC	3 cut(s)	33, 276, 538
CseI	GACGC	2 cut(s)	254, 398
CviAII	CATG	6 cut(s)	49, 266, 295, 316, 386, 512
CviJI	RGCY	8 cut(s)	8, 72, 162, 352, 494, 500, 601, 613
CviKI_1	RGCY	8 cut(s)	8, 72, 162, 352, 494, 500, 601, 613
DdeI	CTNAG	1 cut(s)	607
DpnI	GATC	1 cut(s)	567
DpnII	GATC	1 cut(s)	565
Eam1104I	CTCTTC	1 cut(s)	71
EarI	CTCTTC	1 cut(s)	71
Ecl136II	GAGCTC	1 cut(s)	613
Eco130I	CCWWGG	1 cut(s)	265
Eco24I	GRGCYC	1 cut(s)	615
Eco31I	GGTCTC	1 cut(s)	66
Eco53kI	GAGCTC	1 cut(s)	613
Eco57I	CTGAAG	3 cut(s)	52, 516, 617
EcoICRI	GAGCTC	1 cut(s)	613
EcoNI	CCTNNNNNAGG	1 cut(s)	21
EcoRI	GAATTC	1 cut(s)	37
EcoRII	CCWGG	2 cut(s)	16, 471
EcoT14I	CCWWGG	1 cut(s)	265
EcoT38I	GRGCYC	1 cut(s)	615
ErhI	CCWWGG	1 cut(s)	265
Esp3I	CGTCTC	1 cut(s)	237
FaeI	CATG	6 cut(s)	52, 269, 298, 319, 389, 515
FaqI	GGGAC	1 cut(s)	225
FatI	CATG	6 cut(s)	48, 265, 294, 315, 385, 511
FauI	CCCGC	1 cut(s)	561
FauNDI	CATATG	1 cut(s)	360
FblI	GTMKAC	1 cut(s)	261
Fnu4HI	GCNGC	1 cut(s)	501
FriOI	GRGCYC	1 cut(s)	615
Fsp4HI	GCNGC	1 cut(s)	501
FspBI	CTAG	1 cut(s)	174
GlaI	GCGC	3 cut(s)	32, 275, 537
GluI	GCNGC	1 cut(s)	501
GsuI	CTGGAG	1 cut(s)	151
HaeII	RGCGCY	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	3 cut(s)	101, 195, 456
HgaI	GACGC	2 cut(s)	254, 398
HhaI	GCGC	3 cut(s)	33, 276, 538
Hin1I	GRCGYC	1 cut(s)	246
Hin1II	CATG	6 cut(s)	52, 269, 298, 319, 389, 515
Hin6I	GCGC	3 cut(s)	31, 274, 536
HinP1I	GCGC	3 cut(s)	31, 274, 536
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HindIII	AAGCTT	1 cut(s)	599
HinfI	GANTC	6 cut(s)	13, 191, 231, 284, 436, 546
HpaII	CCGG	3 cut(s)	101, 195, 456
HphI	GGTGA	2 cut(s)	248, 541
Hpy166II	GTNNAC	2 cut(s)	262, 313
Hpy188I	TCNGA	3 cut(s)	570, 597, 610
Hpy188III	TCNNGA	2 cut(s)	168, 386
Hpy8I	GTNNAC	2 cut(s)	262, 313
Hpy99I	CGWCG	2 cut(s)	260, 263
HpyAV	CCTTC	1 cut(s)	387
HpyCH4III	ACNGT	1 cut(s)	576
HpyCH4V	TGCA	2 cut(s)	503, 583
HpyF10VI	GCNNNNNNNGC	1 cut(s)	500
HpyF3I	CTNAG	1 cut(s)	607
Hsp92I	GRCGYC	1 cut(s)	246
Hsp92II	CATG	6 cut(s)	52, 269, 298, 319, 389, 515
HspAI	GCGC	3 cut(s)	31, 274, 536
Kzo9I	GATC	1 cut(s)	565
LmnI	GCTCC	2 cut(s)	77, 349
Lsp1109I	GCAGC	1 cut(s)	487
MaeI	CTAG	1 cut(s)	174
MaeIII	GTNAC	2 cut(s)	236, 529
MalI	GATC	1 cut(s)	567
MboI	GATC	1 cut(s)	565
MboII	GAAGA	3 cut(s)	58, 88, 471
MhlI	GDGCHC	1 cut(s)	615
MluCI	AATT	7 cut(s)	37, 80, 148, 381, 397, 429, 586
MluI	ACGCGT	1 cut(s)	390
MlyI	GAGTC	5 cut(s)	7, 200, 240, 445, 540
MnlI	CCTC	8 cut(s)	17, 87, 146, 175, 197, 302, 458, 549
MseI	TTAA	1 cut(s)	626
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	3 cut(s)	101, 195, 456
MspR9I	CCNGG	5 cut(s)	18, 101, 196, 456, 473
MvaI	CCWGG	2 cut(s)	18, 473
MvnI	CGCG	2 cut(s)	274, 392
MwoI	GCNNNNNNNGC	1 cut(s)	500
NciI	CCSGG	3 cut(s)	101, 196, 456
NcoI	CCATGG	1 cut(s)	265
NdeI	CATATG	1 cut(s)	360
NdeII	GATC	1 cut(s)	565
NlaIII	CATG	6 cut(s)	52, 269, 298, 319, 389, 515
NlaIV	GGNNCC	3 cut(s)	351, 418, 470
NmuCI	GTSAC	2 cut(s)	236, 529
NspI	RCATGY	2 cut(s)	52, 319
PagI	TCATGA	1 cut(s)	385
PciI	ACATGT	2 cut(s)	48, 315
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	284
PflFI	GACNNNGTC	1 cut(s)	248
PfoI	TCCNGGA	1 cut(s)	194
PkrI	GCNGC	1 cut(s)	502
PleI	GAGTC	5 cut(s)	7, 199, 239, 444, 540
PpsI	GAGTC	5 cut(s)	7, 199, 239, 444, 540
PscI	ACATGT	2 cut(s)	48, 315
Psp124BI	GAGCTC	1 cut(s)	615
Psp6I	CCWGG	2 cut(s)	16, 471
PspGI	CCWGG	2 cut(s)	16, 471
PspN4I	GGNNCC	3 cut(s)	351, 418, 470
PsyI	GACNNNGTC	1 cut(s)	248
PvuII	CAGCTG	1 cut(s)	494
SacI	GAGCTC	1 cut(s)	615
SalI	GTCGAC	1 cut(s)	260
SaqAI	TTAA	1 cut(s)	626
SatI	GCNGC	1 cut(s)	501
Sau3AI	GATC	1 cut(s)	565
SchI	GAGTC	5 cut(s)	7, 200, 240, 445, 540
ScrFI	CCNGG	5 cut(s)	18, 101, 196, 456, 473
SduI	GDGCHC	1 cut(s)	615
SetI	ASST	9 cut(s)	28, 74, 294, 379, 418, 496, 502, 603, 615
SfcI	CTRYAG	1 cut(s)	342
Sse9I	AATT	7 cut(s)	37, 80, 148, 381, 397, 429, 586
SsiI	CCGC	1 cut(s)	554
SspMI	CTAG	1 cut(s)	174
SstI	GAGCTC	1 cut(s)	615
StyD4I	CCNGG	5 cut(s)	16, 99, 194, 454, 471
StyI	CCWWGG	1 cut(s)	265
TaaI	ACNGT	1 cut(s)	576
TaqI	TCGA	4 cut(s)	35, 53, 225, 261
TasI	AATT	7 cut(s)	37, 80, 148, 381, 397, 429, 586
TfiI	GAWTC	1 cut(s)	284
Tru1I	TTAA	1 cut(s)	626
Tru9I	TTAA	1 cut(s)	626
TscAI	CASTG	1 cut(s)	579
TseFI	GTSAC	2 cut(s)	236, 529
TseI	GCWGC	1 cut(s)	500
Tsp45I	GTSAC	2 cut(s)	236, 529
TspDTI	ATGAA	1 cut(s)	374
TspRI	CASTG	1 cut(s)	579
Tth111I	GACNNNGTC	1 cut(s)	248
XagI	CCTNNNNNAGG	1 cut(s)	21
XapI	RAATTY	1 cut(s)	37
XceI	RCATGY	2 cut(s)	52, 319
XmiI	GTMKAC	1 cut(s)	261
XspI	CTAG	1 cut(s)	174

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.