Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0003862

Physical Location & Seq

Genomic Coordinates Forward (+)

38098778 .. 38100501

Gene Structure 1724 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g51400.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGGCGTCATCATCGTCGACCACGGTTCCTCATGCTAAGAAGAGAACTGGGTATGCTATAGTGGAGCCTGCTCATATGGTAAGATTGAATCTCTCAATTAGTTTTTGGAGTTGGCAAAACCTTCAAGACGCGTTCAATTCGTGTGTTGAGCAAGGTGTCAATCGTGTTATTGTAAGCCCGTTGTTCCTCTTACCAAGAAGACATTGGAACCAGGACATTCCATCCCTGACAGCTGCTGCTGCAAAGGAGCATCCTGGTGTGTCATATATGGTGACTGCACCTCTTGGCCTTCATCCGCTACTTGTGGATGTTATGAATGACAAAATCAATCATTGCTTGAGACATGTTGCTGGAGATGCTGGTGAGTGTGCTGTTTGTGTTGGAACAGGCAAATGCCAGCTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0018130 GO:0019354 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046156 GO:0046483 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0051266 GO:0051536 GO:0051540 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

CbiX

Protein Analysis

136

Amino Acids

14.74

Weight (kDa)

8.35

Isoelectric Point (pI)

44.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CbiX	PF01903	39 - 106	1e-17	CbiX

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0003862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50170 AT1G50170 AT1G50170
fragaria_vesca	FvH4_3g28470 FvH4_3g28470 FvH4_6g51400
malus_domestica	MD09G1028700.v1.1 MD17G1030300.v1.1
prunus_persica	Prupe.3G207400_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289700_v2.0.a1
pyrus_communis	pycom111g02280 pycom17g02770
rosa_chinensis	RchiOBHm_Chr1g0351301 RchiOBHm_Chr2g0173081 RchiOBHm_Chr7g0219921 RchiOBHm_Chr7g0228061 RchiOBHm_Chr7g0228091
rosa_laevigata	RLG00000022156
rosa_multiflora	Rmu_sc0011236.1_g000008 Rmu_sc0031614.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079260
rosa_rugosa	Rorug02G0565000
rosa_samantha	Rh2AG644900 Rh2BG655700 Rh2CG620800 Rh2DG669000 Rh7DG395300
rosa_wichuraiana	Rw2G052970 Rw7G033220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	17
AccII	CGCG	1 cut(s)	131
AciI	CCGC	1 cut(s)	296
AcyI	GRCGYC	1 cut(s)	5
AflIII	ACRYGT	2 cut(s)	129, 343
AgsI	TTSAA	3 cut(s)	88, 125, 136
AjnI	CCWGG	2 cut(s)	210, 253
AluBI	AGCT	2 cut(s)	233, 400
AluI	AGCT	2 cut(s)	233, 400
Alw26I	GTCTC	1 cut(s)	334
AlwNI	CAGNNNCTG	1 cut(s)	236
AoxI	GGCC	1 cut(s)	286
ApeKI	GCWGC	3 cut(s)	233, 236, 239
AsuHPI	GGTGA	2 cut(s)	283, 374
BbsI	GAAGAC	1 cut(s)	205
BbvI	GCAGC	3 cut(s)	220, 223, 226
BccI	CCATC	1 cut(s)	229
BciT130I	CCWGG	2 cut(s)	212, 255
BcoDI	GTCTC	1 cut(s)	334
BfmI	CTRYAG	1 cut(s)	57
BisI	GCNGC	3 cut(s)	234, 237, 240
BlsI	GCNGC	3 cut(s)	235, 238, 241
Bme1390I	CCNGG	2 cut(s)	212, 255
BmiI	GGNNCC	3 cut(s)	27, 66, 209
BmrFI	CCNGG	2 cut(s)	212, 255
BmrI	ACTGGG	1 cut(s)	57
BmsI	GCATC	2 cut(s)	259, 346
BmuI	ACTGGG	1 cut(s)	57
BpiI	GAAGAC	1 cut(s)	205
BpmI	CTGGAG	1 cut(s)	372
BpuEI	CTTGAG	1 cut(s)	358
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	52
Bse3DI	GCAATG	1 cut(s)	331
BseBI	CCWGG	2 cut(s)	212, 255
BseDI	CCNNGG	1 cut(s)	21
BseGI	GGATG	4 cut(s)	221, 250, 292, 313
BseMI	GCAATG	1 cut(s)	331
BseNI	ACTGG	1 cut(s)	52
BseXI	GCAGC	3 cut(s)	220, 223, 226
BsgI	GTGCAG	1 cut(s)	261
Bsh1236I	CGCG	1 cut(s)	131
BshFI	GGCC	1 cut(s)	288
BsmAI	GTCTC	1 cut(s)	334
BsnI	GGCC	1 cut(s)	288
BspACI	CCGC	1 cut(s)	296
BspANI	GGCC	1 cut(s)	288
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	3 cut(s)	27, 66, 209
BsrDI	GCAATG	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	21
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	2 cut(s)	212, 255
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	35
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	2 cut(s)	69, 398
BstDEI	CTNAG	1 cut(s)	36
BstDSI	CCRYGG	1 cut(s)	21
BstF5I	GGATG	4 cut(s)	221, 250, 292, 313
BstFNI	CGCG	1 cut(s)	131
BstMAI	GTCTC	1 cut(s)	334
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 356
BstNI	CCWGG	2 cut(s)	212, 255
BstNSI	RCATGY	1 cut(s)	347
BstSCI	CCNGG	2 cut(s)	210, 253
BstSFI	CTRYAG	1 cut(s)	57
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	3 cut(s)	220, 223, 226
BstV2I	GAAGAC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	288
BtgI	CCRYGG	1 cut(s)	21
BtsCI	GGATG	4 cut(s)	221, 250, 292, 313
Cac8I	GCNNGC	2 cut(s)	69, 398
CaiI	CAGNNNCTG	1 cut(s)	236
CseI	GACGC	1 cut(s)	137
CviAII	CATG	2 cut(s)	32, 344
CviJI	RGCY	5 cut(s)	67, 177, 233, 288, 400
CviKI_1	RGCY	5 cut(s)	67, 177, 233, 288, 400
DdeI	CTNAG	1 cut(s)	36
Eam1104I	CTCTTC	1 cut(s)	35
EarI	CTCTTC	1 cut(s)	35
EcoRII	CCWGG	2 cut(s)	210, 253
FaeI	CATG	2 cut(s)	35, 347
FatI	CATG	2 cut(s)	31, 343
FauNDI	CATATG	1 cut(s)	75
FblI	GTMKAC	1 cut(s)	17
Fnu4HI	GCNGC	3 cut(s)	234, 237, 240
FokI	GGATG	4 cut(s)	208, 237, 279, 320
Fsp4HI	GCNGC	3 cut(s)	234, 237, 240
GluI	GCNGC	3 cut(s)	234, 237, 240
GsuI	CTGGAG	1 cut(s)	372
HaeIII	GGCC	1 cut(s)	288
HgaI	GACGC	1 cut(s)	137
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	2 cut(s)	35, 347
HincII	GTYRAC	1 cut(s)	18
HindII	GTYRAC	1 cut(s)	18
HinfI	GANTC	1 cut(s)	88
HphI	GGTGA	2 cut(s)	283, 374
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188III	TCNNGA	1 cut(s)	125
Hpy8I	GTNNAC	1 cut(s)	18
Hpy99I	CGWCG	1 cut(s)	19
HpyAV	CCTTC	2 cut(s)	131, 299
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4V	TGCA	2 cut(s)	242, 278
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 356
HpyF3I	CTNAG	1 cut(s)	36
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	2 cut(s)	35, 347
LmnI	GCTCC	3 cut(s)	64, 247, 405
Lsp1109I	GCAGC	3 cut(s)	220, 223, 226
LweI	GCATC	2 cut(s)	259, 346
MaeIII	GTNAC	1 cut(s)	271
MboII	GAAGA	2 cut(s)	52, 210
MluCI	AATT	2 cut(s)	96, 136
MluI	ACGCGT	1 cut(s)	129
MmeI	TCCRAC	1 cut(s)	361
MnlI	CCTC	3 cut(s)	39, 197, 291
MslI	CAYNNNNRTG	1 cut(s)	255
MspA1I	CMGCKG	1 cut(s)	233
MspR9I	CCNGG	2 cut(s)	212, 255
MvaI	CCWGG	2 cut(s)	212, 255
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	2 cut(s)	239, 356
NdeI	CATATG	1 cut(s)	75
NlaIII	CATG	2 cut(s)	35, 347
NlaIV	GGNNCC	3 cut(s)	27, 66, 209
NmuCI	GTSAC	1 cut(s)	271
NspI	RCATGY	1 cut(s)	347
PciI	ACATGT	1 cut(s)	343
PfeI	GAWTC	1 cut(s)	88
PkrI	GCNGC	3 cut(s)	235, 238, 241
PscI	ACATGT	1 cut(s)	343
Psp6I	CCWGG	2 cut(s)	210, 253
PspGI	CCWGG	2 cut(s)	210, 253
PspN4I	GGNNCC	3 cut(s)	27, 66, 209
PstNI	CAGNNNCTG	1 cut(s)	236
PvuII	CAGCTG	1 cut(s)	233
RseI	CAYNNNNRTG	1 cut(s)	255
SalI	GTCGAC	1 cut(s)	16
SatI	GCNGC	3 cut(s)	234, 237, 240
ScrFI	CCNGG	2 cut(s)	212, 255
SetI	ASST	5 cut(s)	123, 157, 235, 283, 402
SfaNI	GCATC	2 cut(s)	259, 346
SfcI	CTRYAG	1 cut(s)	57
SmiMI	CAYNNNNRTG	1 cut(s)	255
SmlI	CTYRAG	1 cut(s)	337
SmoI	CTYRAG	1 cut(s)	337
Sse9I	AATT	2 cut(s)	96, 136
SsiI	CCGC	1 cut(s)	296
StyD4I	CCNGG	2 cut(s)	210, 253
TaaI	ACNGT	1 cut(s)	25
TaqI	TCGA	1 cut(s)	17
TasI	AATT	2 cut(s)	96, 136
TfiI	GAWTC	1 cut(s)	88
TseFI	GTSAC	1 cut(s)	271
TseI	GCWGC	3 cut(s)	233, 236, 239
Tsp45I	GTSAC	1 cut(s)	271
TspDTI	ATGAA	2 cut(s)	281, 329
XceI	RCATGY	1 cut(s)	347
XcmI	CCANNNNNNNNNTGG	1 cut(s)	201
XmiI	GTMKAC	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.