Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0003862

Physical Location & Seq

Genomic Coordinates Forward (+)

1779542 .. 1781519

Gene Structure 1978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1028700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

ATGTCGATTAGGTCGGTATCCACCCGCCCCCAATTTACCGCCAAAAGCTCGCCGGCGAGCGAAATCGTAGCAAGCCCTAGCTGCGCAGTCCTCAACTTCTCGAATTTGCAGAGAGGCCCCTCAAGAAGTGGAAATTCGAGCATAAGGTTGTGTATGGGTAGTGCCGATGGAGGATTCGGGCGGAACCCTCATGGGGTCGGTGACGGAGACGGGGTCATCATCGTCGACCATGGTTCGCGGCGCAAGGAATCAAATCTCATGCTAAATGAGTTCGTGAGCATGTTTAGAGAGAGAACTGGGTACCCAATTGTGGAGGCAGCTCATATGGAGTTGGCGGAACCATCAATTCGGGATGCATTCAGTTCATGTGTTGAACAAGGGGCGAATCGTGTTGTTGTGAGCCCGTTTTTCCTCTCACCTGGTAGACATTGGAATCAGGATATTCCGTCCCTGACAGCTGAAGCTGCAAAGGAGCATCCTGGTGTATCTTATATAGTAACTGCGCCTCTTGGCCTCCATCATCTACTCGTGGATGTTTTGAATGATAGGATCAATCACTGCATAAGCCATGTTGCTGGAGATGCAGAGGAGTGCGCCGTTTGTGCTGGAACAAACAAATGCCAGCTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0018130 GO:0019354 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046156 GO:0046483 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0051266 GO:0051536 GO:0051540 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

CbiX

Protein Analysis

211

Amino Acids

22.51

Weight (kDa)

6.35

Isoelectric Point (pI)

47.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CbiX	PF01903	77 - 181	1.3e-31	CbiX

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50170 AT1G50170 AT1G50170
fragaria_vesca	FvH4_3g28470 FvH4_3g28470 FvH4_6g51400
malus_domestica	MD09G1028700.v1.1 MD17G1030300.v1.1
prunus_persica	Prupe.3G207400_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289700_v2.0.a1
pyrus_communis	pycom111g02280 pycom17g02770
rosa_chinensis	RchiOBHm_Chr1g0351301 RchiOBHm_Chr2g0173081 RchiOBHm_Chr7g0219921 RchiOBHm_Chr7g0228061 RchiOBHm_Chr7g0228091
rosa_laevigata	RLG00000022156
rosa_multiflora	Rmu_sc0011236.1_g000008 Rmu_sc0031614.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079260
rosa_rugosa	Rorug02G0565000
rosa_samantha	Rh2AG644900 Rh2BG655700 Rh2CG620800 Rh2DG669000 Rh7DG395300
rosa_wichuraiana	Rw2G052970 Rw7G033220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	85
Acc65I	GGTACC	1 cut(s)	300
AccB1I	GGYRCC	1 cut(s)	300
AccI	GTMKAC	2 cut(s)	225, 424
AccII	CGCG	1 cut(s)	238
AciI	CCGC	5 cut(s)	25, 39, 181, 238, 335
AclWI	GGATC	1 cut(s)	557
AcsI	RAATTY	2 cut(s)	103, 133
AcuI	CTGAAG	1 cut(s)	480
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	2 cut(s)	193, 310
AgsI	TTSAA	2 cut(s)	374, 541
AjnI	CCWGG	2 cut(s)	418, 478
AluBI	AGCT	6 cut(s)	48, 81, 320, 458, 464, 625
AluI	AGCT	6 cut(s)	48, 81, 320, 458, 464, 625
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	1 cut(s)	557
AoxI	GGCC	2 cut(s)	115, 511
ApeKI	GCWGC	3 cut(s)	81, 317, 464
ApoI	RAATTY	2 cut(s)	103, 133
Asp718I	GGTACC	1 cut(s)	300
AspLEI	GCGC	4 cut(s)	86, 243, 505, 596
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	2 cut(s)	212, 408
BanI	GGYRCC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	404
BauI	CACGAG	1 cut(s)	527
BbvI	GCAGC	3 cut(s)	68, 329, 451
BccI	CCATC	3 cut(s)	161, 349, 525
BceAI	ACGGC	1 cut(s)	581
BciT130I	CCWGG	2 cut(s)	420, 480
BciVI	GTATCC	1 cut(s)	28
BcoDI	GTCTC	1 cut(s)	201
BfaI	CTAG	1 cut(s)	78
BfuI	GTATCC	1 cut(s)	28
BisI	GCNGC	4 cut(s)	82, 239, 318, 465
BlsI	GCNGC	4 cut(s)	83, 240, 319, 466
Bme1390I	CCNGG	2 cut(s)	420, 480
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	4 cut(s)	118, 185, 302, 339
BmrFI	CCNGG	2 cut(s)	420, 480
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	3 cut(s)	343, 484, 571
BmuI	ACTGGG	1 cut(s)	306
BpmI	CTGGAG	1 cut(s)	597
BpuEI	CTTGAG	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 310
Bse118I	RCCGGY	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	301
BseBI	CCWGG	2 cut(s)	420, 480
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	3 cut(s)	358, 475, 538
BseLI	CCNNNNNNNGG	2 cut(s)	193, 310
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	602
BseXI	GCAGC	3 cut(s)	68, 329, 451
Bsh1236I	CGCG	1 cut(s)	238
BshFI	GGCC	2 cut(s)	117, 513
BshNI	GGYRCC	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	2 cut(s)	193, 310
BsmAI	GTCTC	1 cut(s)	201
BsmBI	CGTCTC	1 cut(s)	201
BsmFI	GGGAC	1 cut(s)	433
BsmI	GAATGC	1 cut(s)	356
BsnI	GGCC	2 cut(s)	117, 513
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp143I	GATC	1 cut(s)	549
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	5 cut(s)	25, 39, 181, 238, 335
BspANI	GGCC	2 cut(s)	117, 513
BspFNI	CGCG	1 cut(s)	238
BspLI	GGNNCC	4 cut(s)	118, 185, 302, 339
BspPI	GGATC	1 cut(s)	557
BspT107I	GGYRCC	1 cut(s)	300
BsrFI	RCCGGY	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	229
BssMI	GATC	1 cut(s)	549
BssSI	CACGAG	1 cut(s)	527
BssT1I	CCWWGG	1 cut(s)	229
Bst2BI	CACGAG	1 cut(s)	527
Bst2UI	CCWGG	2 cut(s)	420, 480
BstC8I	GCNNGC	5 cut(s)	50, 54, 58, 73, 623
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	3 cut(s)	358, 475, 538
BstFNI	CGCG	1 cut(s)	238
BstHHI	GCGC	4 cut(s)	86, 243, 505, 596
BstKTI	GATC	1 cut(s)	552
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	1 cut(s)	549
BstMWI	GCNNNNNNNGC	4 cut(s)	81, 464, 581, 602
BstNI	CCWGG	2 cut(s)	420, 480
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	2 cut(s)	418, 478
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	3 cut(s)	68, 329, 451
BstXI	CCANNNNNNTGG	1 cut(s)	575
BsuI	GTATCC	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	117, 513
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	3 cut(s)	358, 475, 538
BtsI	GCAGTG	1 cut(s)	556
BtsIMutI	CAGTG	1 cut(s)	556
Cac8I	GCNNGC	5 cut(s)	50, 54, 58, 73, 623
CfoI	GCGC	4 cut(s)	86, 243, 505, 596
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	116
CsiI	ACCWGGT	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	6 cut(s)	191, 230, 259, 280, 366, 569
CviQI	GTAC	1 cut(s)	301
DpnI	GATC	1 cut(s)	551
DpnII	GATC	1 cut(s)	549
EciI	GGCGGA	2 cut(s)	196, 350
Eco130I	CCWWGG	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	480
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRII	CCWGG	2 cut(s)	418, 478
EcoT14I	CCWWGG	1 cut(s)	229
EcoT22I	ATGCAT	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	404
ErhI	CCWWGG	1 cut(s)	229
Esp3I	CGTCTC	1 cut(s)	201
FaeI	CATG	6 cut(s)	194, 233, 262, 283, 369, 572
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	6 cut(s)	190, 229, 258, 279, 365, 568
FauI	CCCGC	1 cut(s)	32
FauNDI	CATATG	1 cut(s)	324
FblI	GTMKAC	2 cut(s)	225, 424
Fnu4HI	GCNGC	4 cut(s)	82, 239, 318, 465
FokI	GGATG	3 cut(s)	365, 462, 545
FriOI	GRGCYC	1 cut(s)	404
Fsp4HI	GCNGC	4 cut(s)	82, 239, 318, 465
FspBI	CTAG	1 cut(s)	78
FspI	TGCGCA	1 cut(s)	85
GlaI	GCGC	4 cut(s)	85, 242, 504, 595
GluI	GCNGC	4 cut(s)	82, 239, 318, 465
GsuI	CTGGAG	1 cut(s)	597
HaeIII	GGCC	2 cut(s)	117, 513
HapII	CCGG	1 cut(s)	53
HhaI	GCGC	4 cut(s)	86, 243, 505, 596
Hin1II	CATG	6 cut(s)	194, 233, 262, 283, 369, 572
Hin6I	GCGC	4 cut(s)	84, 241, 503, 594
HinP1I	GCGC	4 cut(s)	84, 241, 503, 594
HincII	GTYRAC	1 cut(s)	226
HindII	GTYRAC	1 cut(s)	226
HinfI	GANTC	4 cut(s)	174, 248, 385, 433
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	2 cut(s)	212, 408
Hpy166II	GTNNAC	2 cut(s)	226, 425
Hpy188III	TCNNGA	5 cut(s)	100, 123, 274, 350, 437
Hpy8I	GTNNAC	2 cut(s)	226, 425
Hpy99I	CGWCG	1 cut(s)	227
HpyCH4V	TGCA	5 cut(s)	109, 356, 467, 561, 584
HpyF10VI	GCNNNNNNNGC	4 cut(s)	81, 464, 581, 602
Hsp92II	CATG	6 cut(s)	194, 233, 262, 283, 369, 572
HspAI	GCGC	4 cut(s)	84, 241, 503, 594
KpnI	GGTACC	1 cut(s)	304
KroI	GCCGGC	1 cut(s)	52
KroNI	GCCGGC	1 cut(s)	54
Kzo9I	GATC	1 cut(s)	549
LmnI	GCTCC	2 cut(s)	472, 630
Lsp1109I	GCAGC	3 cut(s)	68, 329, 451
LweI	GCATC	3 cut(s)	343, 484, 571
MabI	ACCWGGT	1 cut(s)	418
MaeI	CTAG	1 cut(s)	78
MaeIII	GTNAC	2 cut(s)	200, 496
MalI	GATC	1 cut(s)	551
MboI	GATC	1 cut(s)	549
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	404
MluCI	AATT	5 cut(s)	32, 103, 133, 306, 345
Mph1103I	ATGCAT	1 cut(s)	358
MreI	CGCCGGCG	1 cut(s)	52
MroNI	GCCGGC	1 cut(s)	52
MslI	CAYNNNNRTG	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	458
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	2 cut(s)	420, 480
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	356
MvaI	CCWGG	2 cut(s)	420, 480
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	4 cut(s)	81, 464, 581, 602
NaeI	GCCGGC	1 cut(s)	54
NcoI	CCATGG	1 cut(s)	229
NdeI	CATATG	1 cut(s)	324
NdeII	GATC	1 cut(s)	549
NgoMIV	GCCGGC	1 cut(s)	52
NlaIII	CATG	6 cut(s)	194, 233, 262, 283, 369, 572
NlaIV	GGNNCC	4 cut(s)	118, 185, 302, 339
NmuCI	GTSAC	1 cut(s)	200
NsbI	TGCGCA	1 cut(s)	85
NsiI	ATGCAT	1 cut(s)	358
NspI	RCATGY	1 cut(s)	283
PctI	GAATGC	1 cut(s)	356
PdiI	GCCGGC	1 cut(s)	54
PfeI	GAWTC	4 cut(s)	174, 248, 385, 433
PflFI	GACNNNGTC	1 cut(s)	212
PkrI	GCNGC	4 cut(s)	83, 240, 319, 466
Psp6I	CCWGG	2 cut(s)	418, 478
PspGI	CCWGG	2 cut(s)	418, 478
PspN4I	GGNNCC	4 cut(s)	118, 185, 302, 339
PspPI	GGNCC	1 cut(s)	116
PsyI	GACNNNGTC	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
RseI	CAYNNNNRTG	1 cut(s)	480
SalI	GTCGAC	1 cut(s)	224
SatI	GCNGC	4 cut(s)	82, 239, 318, 465
Sau3AI	GATC	1 cut(s)	549
Sau96I	GGNCC	1 cut(s)	116
ScrFI	CCNGG	2 cut(s)	420, 480
SduI	GDGCHC	1 cut(s)	404
SetI	ASST	9 cut(s)	14, 50, 83, 149, 322, 421, 460, 466, 627
SexAI	ACCWGGT	1 cut(s)	418
SfaNI	GCATC	3 cut(s)	343, 484, 571
SgrAI	CRCCGGYG	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
Sse9I	AATT	5 cut(s)	32, 103, 133, 306, 345
SsiI	CCGC	5 cut(s)	25, 39, 181, 238, 335
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	2 cut(s)	418, 478
StyI	CCWWGG	1 cut(s)	229
TaqI	TCGA	4 cut(s)	5, 101, 137, 225
TasI	AATT	5 cut(s)	32, 103, 133, 306, 345
TauI	GCSGC	1 cut(s)	241
TfiI	GAWTC	4 cut(s)	174, 248, 385, 433
TscAI	CASTG	1 cut(s)	563
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	3 cut(s)	81, 317, 464
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	354
TspGWI	ACGGA	2 cut(s)	219, 435
TspRI	CASTG	1 cut(s)	563
Tth111I	GACNNNGTC	1 cut(s)	212
XapI	RAATTY	2 cut(s)	103, 133
XceI	RCATGY	1 cut(s)	283
XmiI	GTMKAC	2 cut(s)	225, 424
XspI	CTAG	1 cut(s)	78
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.