Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0031614.1

Orthogroup ID

OG0003862

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1326

Gene Structure 1326 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0031614.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

gagttggcagaaccttcaattcaagacgcgttcaattcgtgtgttgaacaaggtgccaatcgtgttattgttagcccgtttttcctcctaccaggaagacattggaacaaggacattccatccctgacagctgaagctgcaaaggagcatcctggtgtgtcatatatggtgactgcgcctctaggcctccacccactacttgtggatgttatgaatgacagaatcaatcactgcttgagccatgttgctggagatgcagctgagtgtgctgtttgtgttggaacaggcaaatgccagctccattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0018130 GO:0019354 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046156 GO:0046483 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0051266 GO:0051536 GO:0051540 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

CbiX

Protein Analysis

101

Amino Acids

10.83

Weight (kDa)

5.54

Isoelectric Point (pI)

36.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50170 AT1G50170 AT1G50170
fragaria_vesca	FvH4_3g28470 FvH4_3g28470 FvH4_6g51400
malus_domestica	MD09G1028700.v1.1 MD17G1030300.v1.1
prunus_persica	Prupe.3G207400_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289700_v2.0.a1
pyrus_communis	pycom111g02280 pycom17g02770
rosa_chinensis	RchiOBHm_Chr1g0351301 RchiOBHm_Chr2g0173081 RchiOBHm_Chr7g0219921 RchiOBHm_Chr7g0228061 RchiOBHm_Chr7g0228091
rosa_laevigata	RLG00000022156
rosa_multiflora	Rmu_sc0011236.1_g000008 Rmu_sc0031614.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079260
rosa_rugosa	Rorug02G0565000
rosa_samantha	Rh2AG644900 Rh2BG655700 Rh2CG620800 Rh2DG669000 Rh7DG395300
rosa_wichuraiana	Rw2G052970 Rw7G033220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	53
AccII	CGCG	1 cut(s)	29
AcuI	CTGAAG	1 cut(s)	153
AflIII	ACRYGT	1 cut(s)	27
AgsI	TTSAA	4 cut(s)	18, 23, 34, 47
AjnI	CCWGG	2 cut(s)	91, 151
AluBI	AGCT	4 cut(s)	131, 137, 260, 298
AluI	AGCT	4 cut(s)	131, 137, 260, 298
AoxI	GGCC	1 cut(s)	184
ApeKI	GCWGC	2 cut(s)	137, 257
AspLEI	GCGC	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	181
BanI	GGYRCC	1 cut(s)	53
BbsI	GAAGAC	1 cut(s)	103
BbvI	GCAGC	2 cut(s)	124, 269
BccI	CCATC	1 cut(s)	127
BciT130I	CCWGG	2 cut(s)	93, 153
BfaI	CTAG	1 cut(s)	182
BisI	GCNGC	2 cut(s)	138, 258
BlsI	GCNGC	2 cut(s)	139, 259
Bme1390I	CCNGG	2 cut(s)	93, 153
BmiI	GGNNCC	1 cut(s)	55
BmrFI	CCNGG	2 cut(s)	93, 153
BmsI	GCATC	2 cut(s)	157, 244
BpiI	GAAGAC	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	256
BseBI	CCWGG	2 cut(s)	93, 153
BseGI	GGATG	3 cut(s)	119, 148, 211
BseMII	CTCAG	1 cut(s)	252
BseXI	GCAGC	2 cut(s)	124, 269
Bsh1236I	CGCG	1 cut(s)	29
BshFI	GGCC	1 cut(s)	186
BshNI	GGYRCC	1 cut(s)	53
BsnI	GGCC	1 cut(s)	186
BspANI	GGCC	1 cut(s)	186
BspCNI	CTCAG	1 cut(s)	253
BspFNI	CGCG	1 cut(s)	29
BspLI	GGNNCC	1 cut(s)	55
BspT107I	GGYRCC	1 cut(s)	53
Bst2UI	CCWGG	2 cut(s)	93, 153
BstC8I	GCNNGC	1 cut(s)	296
BstDEI	CTNAG	1 cut(s)	261
BstF5I	GGATG	3 cut(s)	119, 148, 211
BstFNI	CGCG	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	178
BstMWI	GCNNNNNNNGC	3 cut(s)	137, 254, 266
BstNI	CCWGG	2 cut(s)	93, 153
BstSCI	CCNGG	2 cut(s)	91, 151
BstUI	CGCG	1 cut(s)	29
BstV1I	GCAGC	2 cut(s)	124, 269
BstV2I	GAAGAC	1 cut(s)	103
BstXI	CCANNNNNNTGG	1 cut(s)	248
BsuRI	GGCC	1 cut(s)	186
BtsCI	GGATG	3 cut(s)	119, 148, 211
BtsI	GCAGTG	1 cut(s)	229
BtsIMutI	CAGTG	1 cut(s)	229
Cac8I	GCNNGC	1 cut(s)	296
CfoI	GCGC	1 cut(s)	178
CseI	GACGC	1 cut(s)	35
CviAII	CATG	1 cut(s)	242
CviJI	RGCY	7 cut(s)	75, 131, 137, 186, 240, 260, 298
CviKI_1	RGCY	7 cut(s)	75, 131, 137, 186, 240, 260, 298
DdeI	CTNAG	1 cut(s)	261
Eco147I	AGGCCT	1 cut(s)	186
Eco57I	CTGAAG	1 cut(s)	153
EcoRII	CCWGG	2 cut(s)	91, 151
FaeI	CATG	1 cut(s)	245
FaiI	YATR	5 cut(s)	163, 165, 167, 212, 243
FatI	CATG	1 cut(s)	241
Fnu4HI	GCNGC	2 cut(s)	138, 258
FokI	GGATG	3 cut(s)	106, 135, 218
Fsp4HI	GCNGC	2 cut(s)	138, 258
FspBI	CTAG	1 cut(s)	182
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	2 cut(s)	138, 258
GsuI	CTGGAG	1 cut(s)	270
HaeIII	GGCC	1 cut(s)	186
HgaI	GACGC	1 cut(s)	35
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	1 cut(s)	245
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HinfI	GANTC	1 cut(s)	222
HphI	GGTGA	1 cut(s)	181
Hpy188III	TCNNGA	1 cut(s)	23
HpyAV	CCTTC	1 cut(s)	24
HpyCH4V	TGCA	2 cut(s)	140, 257
HpyF10VI	GCNNNNNNNGC	3 cut(s)	137, 254, 266
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	245
HspAI	GCGC	1 cut(s)	176
LmnI	GCTCC	2 cut(s)	145, 303
LpnPI	CCDG	7 cut(s)	78, 105, 137, 138, 165, 234, 270
Lsp1109I	GCAGC	2 cut(s)	124, 269
LweI	GCATC	2 cut(s)	157, 244
MaeI	CTAG	1 cut(s)	182
MaeIII	GTNAC	1 cut(s)	169
MboII	GAAGA	1 cut(s)	108
MluCI	AATT	2 cut(s)	18, 34
MluI	ACGCGT	1 cut(s)	27
MmeI	TCCRAC	1 cut(s)	259
MnlI	CCTC	3 cut(s)	95, 189, 197
MslI	CAYNNNNRTG	1 cut(s)	153
MspA1I	CMGCKG	2 cut(s)	131, 260
MspR9I	CCNGG	2 cut(s)	93, 153
MvaI	CCWGG	2 cut(s)	93, 153
MvnI	CGCG	1 cut(s)	29
MwoI	GCNNNNNNNGC	3 cut(s)	137, 254, 266
NlaIII	CATG	1 cut(s)	245
NlaIV	GGNNCC	1 cut(s)	55
NmuCI	GTSAC	1 cut(s)	169
PceI	AGGCCT	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	222
PkrI	GCNGC	2 cut(s)	139, 259
Psp6I	CCWGG	2 cut(s)	91, 151
PspGI	CCWGG	2 cut(s)	91, 151
PspN4I	GGNNCC	1 cut(s)	55
PvuII	CAGCTG	2 cut(s)	131, 260
RseI	CAYNNNNRTG	1 cut(s)	153
SatI	GCNGC	2 cut(s)	138, 258
ScrFI	CCNGG	2 cut(s)	93, 153
SetI	ASST	6 cut(s)	16, 55, 133, 139, 262, 300
SfaNI	GCATC	2 cut(s)	157, 244
SmiMI	CAYNNNNRTG	1 cut(s)	153
SmlI	CTYRAG	1 cut(s)	235
SmoI	CTYRAG	1 cut(s)	235
Sse9I	AATT	2 cut(s)	18, 34
SseBI	AGGCCT	1 cut(s)	186
SspMI	CTAG	1 cut(s)	182
StuI	AGGCCT	1 cut(s)	186
StyD4I	CCNGG	2 cut(s)	91, 151
TasI	AATT	2 cut(s)	18, 34
TfiI	GAWTC	1 cut(s)	222
TscAI	CASTG	1 cut(s)	236
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	2 cut(s)	137, 257
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	1 cut(s)	227
TspRI	CASTG	1 cut(s)	236
XcmI	CCANNNNNNNNNTGG	1 cut(s)	99
XspI	CTAG	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.