Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003862

Physical Location & Seq

Genomic Coordinates Forward (+)

51410427 .. 51414320

Gene Structure 3894 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20430

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

ATGTTGCTTTCAATAATGTGGTTAGATAGATTAAGGCAAAATGGTTACATGAATCAGCTGTGTGCCATTTTACAGGATATTCCATCCCTAACAGCTGAAGCTGCAAAGGAGCATCCTTGTATGTGCTATATAATAACTGCACCTCTTGGCCTCCATCCACCGCTAGTGATTTTCAACAAATTCCTGTGGGTGGTAGCCGGTGACCGGACTCCGGCAGCCAGTGACCGGAATCCGGCAAAAGTTGACCGGATTCCGGCGAAGTCTCCCATGGATATTCCACCCCTAACAGCTGAAGCTGCAAAGGAGCATCCCGGTGTGTTATCCTGTACTTGTGGATCTACACCTATGGACCTTCTGCTTAATATTTTTGTTTTCATGTGCTCAACTTCAATGTCAAACAAATTATTAATGAACTACAATGATACTGTATTTCTAAGTTTACAGGACATTTGGCTGCAGGATATTTTGAATGATAAGATCAGTCACTGCTCAAGCCATGTTGCTGGAGATGCGAATAAGTGTGCTGTTTGTGTTGGAGAAAGCAAATGGCAGCTCCATTGTGTAACTTTGGGTTACATTTTTAGCACTCCTGAAATACTATGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0018130 GO:0019354 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046156 GO:0046483 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0051266 GO:0051536 GO:0051540 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

CbiX

Protein Analysis

202

Amino Acids

22.41

Weight (kDa)

5.8

Isoelectric Point (pI)

42.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50170 AT1G50170 AT1G50170
fragaria_vesca	FvH4_3g28470 FvH4_3g28470 FvH4_6g51400
malus_domestica	MD09G1028700.v1.1 MD17G1030300.v1.1
prunus_persica	Prupe.3G207400_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289700_v2.0.a1
pyrus_communis	pycom111g02280 pycom17g02770
rosa_chinensis	RchiOBHm_Chr1g0351301 RchiOBHm_Chr2g0173081 RchiOBHm_Chr7g0219921 RchiOBHm_Chr7g0228061 RchiOBHm_Chr7g0228091
rosa_laevigata	RLG00000022156
rosa_multiflora	Rmu_sc0011236.1_g000008 Rmu_sc0031614.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079260
rosa_rugosa	Rorug02G0565000
rosa_samantha	Rh2AG644900 Rh2BG655700 Rh2CG620800 Rh2DG669000 Rh7DG395300
rosa_wichuraiana	Rw2G052970 Rw7G033220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	161
AclWI	GGATC	1 cut(s)	343
AcsI	RAATTY	1 cut(s)	179
AcuI	CTGAAG	2 cut(s)	117, 312
AfaI	GTAC	1 cut(s)	328
AfiI	CCNNNNNNNGG	6 cut(s)	190, 204, 211, 225, 232, 253
AgsI	TTSAA	4 cut(s)	12, 175, 390, 469
AluBI	AGCT	6 cut(s)	58, 95, 101, 290, 296, 553
AluI	AGCT	6 cut(s)	58, 95, 101, 290, 296, 553
Alw21I	GWGCWC	1 cut(s)	383
Alw26I	GTCTC	1 cut(s)	267
AlwI	GGATC	1 cut(s)	343
AlwNI	CAGNNNCTG	1 cut(s)	486
AoxI	GGCC	1 cut(s)	148
ApeKI	GCWGC	5 cut(s)	101, 215, 296, 454, 550
ApoI	RAATTY	1 cut(s)	179
AseI	ATTAAT	1 cut(s)	407
AspS9I	GGNCC	1 cut(s)	349
AsuC2I	CCSGG	1 cut(s)	312
AsuHPI	GGTGA	1 cut(s)	212
AvaII	GGWCC	1 cut(s)	349
Bbv12I	GWGCWC	1 cut(s)	383
BbvI	GCAGC	5 cut(s)	88, 227, 283, 441, 562
BccI	CCATC	2 cut(s)	91, 162
BcnI	CCSGG	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	1 cut(s)	164
BfmI	CTRYAG	1 cut(s)	455
BisI	GCNGC	5 cut(s)	102, 216, 297, 455, 551
BlsI	GCNGC	5 cut(s)	103, 217, 298, 456, 552
Bme1390I	CCNGG	1 cut(s)	312
Bme18I	GGWCC	1 cut(s)	349
BmgT120I	GGNCC	1 cut(s)	349
BmrFI	CCNGG	1 cut(s)	312
BmsI	GCATC	3 cut(s)	121, 316, 499
BpmI	CTGGAG	1 cut(s)	525
BpuEI	CTTGAG	1 cut(s)	475
BpuMI	CCSGG	1 cut(s)	312
BsaJI	CCNNGG	1 cut(s)	267
BsaWI	WCCGGW	3 cut(s)	204, 225, 246
Bsc4I	CCNNNNNNNGG	6 cut(s)	190, 204, 211, 225, 232, 253
Bse118I	RCCGGY	1 cut(s)	197
Bse1I	ACTGG	1 cut(s)	219
BseDI	CCNNGG	1 cut(s)	267
BseGI	GGATG	4 cut(s)	83, 112, 154, 307
BseLI	CCNNNNNNNGG	6 cut(s)	190, 204, 211, 225, 232, 253
BseNI	ACTGG	1 cut(s)	219
BseXI	GCAGC	5 cut(s)	88, 227, 283, 441, 562
BsgI	GTGCAG	1 cut(s)	123
BshFI	GGCC	1 cut(s)	150
BsiHKAI	GWGCWC	1 cut(s)	383
BsiSI	CCGG	8 cut(s)	198, 205, 212, 226, 233, 247, 254, 312
BslI	CCNNNNNNNGG	6 cut(s)	190, 204, 211, 225, 232, 253
BsmAI	GTCTC	1 cut(s)	267
BsnI	GGCC	1 cut(s)	150
Bsp1286I	GDGCHC	1 cut(s)	383
Bsp143I	GATC	2 cut(s)	335, 477
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	1 cut(s)	161
BspANI	GGCC	1 cut(s)	150
BspMAI	CTGCAG	1 cut(s)	459
BspPI	GGATC	1 cut(s)	343
BsrFI	RCCGGY	1 cut(s)	197
BsrI	ACTGG	1 cut(s)	219
BssAI	RCCGGY	1 cut(s)	197
BssECI	CCNNGG	1 cut(s)	267
BssMI	GATC	2 cut(s)	335, 477
BssT1I	CCWWGG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	427
BstDEI	CTNAG	1 cut(s)	434
BstDSI	CCRYGG	1 cut(s)	267
BstEII	GGTNACC	1 cut(s)	200
BstF5I	GGATG	4 cut(s)	83, 112, 154, 307
BstKTI	GATC	2 cut(s)	338, 480
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	2 cut(s)	335, 477
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 296, 509
BstPI	GGTNACC	1 cut(s)	200
BstSCI	CCNGG	1 cut(s)	310
BstSFI	CTRYAG	1 cut(s)	455
BstV1I	GCAGC	5 cut(s)	88, 227, 283, 441, 562
BstX2I	RGATCY	1 cut(s)	335
BstXI	CCANNNNNNTGG	1 cut(s)	503
BstYI	RGATCY	1 cut(s)	335
BsuRI	GGCC	1 cut(s)	150
BtgI	CCRYGG	1 cut(s)	267
BtsCI	GGATG	4 cut(s)	83, 112, 154, 307
BtsI	GCAGTG	1 cut(s)	484
BtsIMutI	CAGTG	2 cut(s)	226, 484
CaiI	CAGNNNCTG	1 cut(s)	486
Cfr10I	RCCGGY	1 cut(s)	197
Cfr13I	GGNCC	1 cut(s)	349
Csp6I	GTAC	1 cut(s)	327
CviAII	CATG	4 cut(s)	49, 268, 376, 497
CviQI	GTAC	1 cut(s)	327
DdeI	CTNAG	1 cut(s)	434
DpnI	GATC	2 cut(s)	337, 479
DpnII	GATC	2 cut(s)	335, 477
Eco130I	CCWWGG	1 cut(s)	267
Eco47I	GGWCC	1 cut(s)	349
Eco57I	CTGAAG	2 cut(s)	117, 312
Eco91I	GGTNACC	1 cut(s)	200
EcoO65I	GGTNACC	1 cut(s)	200
EcoT14I	CCWWGG	1 cut(s)	267
ErhI	CCWWGG	1 cut(s)	267
FaeI	CATG	4 cut(s)	52, 271, 379, 500
FaiI	YATR	9 cut(s)	50, 122, 129, 131, 269, 347, 377, 498, 601
FatI	CATG	4 cut(s)	48, 267, 375, 496
Fnu4HI	GCNGC	5 cut(s)	102, 216, 297, 455, 551
FokI	GGATG	4 cut(s)	70, 99, 141, 294
Fsp4HI	GCNGC	5 cut(s)	102, 216, 297, 455, 551
FspBI	CTAG	1 cut(s)	164
GluI	GCNGC	5 cut(s)	102, 216, 297, 455, 551
GsuI	CTGGAG	1 cut(s)	525
HaeIII	GGCC	1 cut(s)	150
HapII	CCGG	8 cut(s)	198, 205, 212, 226, 233, 247, 254, 312
Hin1II	CATG	4 cut(s)	52, 271, 379, 500
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	4 cut(s)	52, 208, 229, 250
HpaII	CCGG	8 cut(s)	198, 205, 212, 226, 233, 247, 254, 312
HphI	GGTGA	1 cut(s)	212
Hpy166II	GTNNAC	2 cut(s)	244, 440
Hpy188III	TCNNGA	1 cut(s)	590
Hpy8I	GTNNAC	2 cut(s)	244, 440
HpyAV	CCTTC	1 cut(s)	362
HpyCH4III	ACNGT	1 cut(s)	427
HpyCH4V	TGCA	4 cut(s)	104, 140, 299, 457
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 296, 509
HpyF3I	CTNAG	1 cut(s)	434
Hsp92II	CATG	4 cut(s)	52, 271, 379, 500
Kzo9I	GATC	2 cut(s)	335, 477
LmnI	GCTCC	3 cut(s)	109, 304, 558
Lsp1109I	GCAGC	5 cut(s)	88, 227, 283, 441, 562
LweI	GCATC	3 cut(s)	121, 316, 499
MaeI	CTAG	1 cut(s)	164
MaeIII	GTNAC	6 cut(s)	44, 200, 221, 482, 562, 572
MalI	GATC	2 cut(s)	337, 479
MboI	GATC	2 cut(s)	335, 477
MflI	RGATCY	1 cut(s)	335
MhlI	GDGCHC	1 cut(s)	383
MluCI	AATT	2 cut(s)	179, 401
MlyI	GAGTC	1 cut(s)	202
MmeI	TCCRAC	1 cut(s)	514
MnlI	CCTC	2 cut(s)	153, 161
MseI	TTAA	3 cut(s)	32, 360, 407
MslI	CAYNNNNRTG	1 cut(s)	312
MspA1I	CMGCKG	3 cut(s)	58, 95, 290
MspI	CCGG	8 cut(s)	198, 205, 212, 226, 233, 247, 254, 312
MspR9I	CCNGG	1 cut(s)	312
MwoI	GCNNNNNNNGC	3 cut(s)	101, 296, 509
NciI	CCSGG	1 cut(s)	312
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	2 cut(s)	335, 477
NlaIII	CATG	4 cut(s)	52, 271, 379, 500
NmuCI	GTSAC	3 cut(s)	200, 221, 482
PfeI	GAWTC	3 cut(s)	52, 229, 250
PkrI	GCNGC	5 cut(s)	103, 217, 298, 456, 552
PleI	GAGTC	1 cut(s)	202
PpsI	GAGTC	1 cut(s)	202
PshBI	ATTAAT	1 cut(s)	407
PspEI	GGTNACC	1 cut(s)	200
PspPI	GGNCC	1 cut(s)	349
PstI	CTGCAG	1 cut(s)	459
PstNI	CAGNNNCTG	1 cut(s)	486
PsuI	RGATCY	1 cut(s)	335
PvuII	CAGCTG	3 cut(s)	58, 95, 290
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
RseI	CAYNNNNRTG	1 cut(s)	312
SaqAI	TTAA	3 cut(s)	32, 360, 407
SatI	GCNGC	5 cut(s)	102, 216, 297, 455, 551
Sau3AI	GATC	2 cut(s)	335, 477
Sau96I	GGNCC	1 cut(s)	349
SchI	GAGTC	1 cut(s)	202
ScrFI	CCNGG	1 cut(s)	312
SduI	GDGCHC	1 cut(s)	383
SetI	ASST	9 cut(s)	60, 97, 103, 145, 292, 298, 346, 354, 555
SfaNI	GCATC	3 cut(s)	121, 316, 499
SfcI	CTRYAG	1 cut(s)	455
SinI	GGWCC	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	312
SmlI	CTYRAG	1 cut(s)	490
SmoI	CTYRAG	1 cut(s)	490
Sse9I	AATT	2 cut(s)	179, 401
SsiI	CCGC	1 cut(s)	161
SspI	AATATT	1 cut(s)	364
SspMI	CTAG	1 cut(s)	164
StyD4I	CCNGG	1 cut(s)	310
StyI	CCWWGG	1 cut(s)	267
TaaI	ACNGT	1 cut(s)	427
TasI	AATT	2 cut(s)	179, 401
TatI	WGTACW	1 cut(s)	326
TfiI	GAWTC	3 cut(s)	52, 229, 250
Tru1I	TTAA	3 cut(s)	32, 360, 407
Tru9I	TTAA	3 cut(s)	32, 360, 407
TscAI	CASTG	2 cut(s)	226, 491
TseFI	GTSAC	3 cut(s)	200, 221, 482
TseI	GCWGC	5 cut(s)	101, 215, 296, 454, 550
Tsp45I	GTSAC	3 cut(s)	200, 221, 482
TspDTI	ATGAA	3 cut(s)	65, 364, 425
TspRI	CASTG	2 cut(s)	226, 491
VpaK11BI	GGWCC	1 cut(s)	349
VspI	ATTAAT	1 cut(s)	407
XapI	RAATTY	1 cut(s)	179
XspI	CTAG	1 cut(s)	164

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.