Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0003862

Physical Location & Seq

Genomic Coordinates Forward (+)

87312962 .. 87315212

Gene Structure 2251 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG655700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGTCGATTGGGTCGTTGTTCAGCTCTCCTCAAGTTACCGCTAAAATCTCCCCGGCGACCGACAGCCGAACAAACCCTAACCGGAGCCTCAACTTCTCGAATTTGCAGAGAGGCCCCTCCACAACTAGAAATTTAAGCATCGGGATCGGGAATGGAGGATTGGGACAAACTAATCCCCATGGAGTTGGCGACAGAGACGGCGTCATCATTGTCGACCATGGCTCGCGCCGTAAGGAATCAAACCTCATGCTAAATGAGTTTGTGGACATGTTTAGGGAGAGAACTGGGTATGCTATAGTGGAGCCTGCTCATATGGAGTTGGCAGAACCTTCAATTCAAGACGCGTTCAATTCGTGTGTTGAACAAGGTGCCAATCGTGTTATTGTTAGCCCCTTTTTCCTCCTACCAGGAAGACATTGGAACAAGGACATTCCATCCCTGACAACCGAAGCTGCAAAGGAGCATCCTGGTGTGTCATATATGGTGACTGCGCCTCTAGGCCTCCACCCACTACTTGTGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0018130 GO:0019354 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046156 GO:0046483 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0051266 GO:0051536 GO:0051540 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

CbiX

Protein Analysis

174

Amino Acids

18.85

Weight (kDa)

6.58

Isoelectric Point (pI)

43.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CbiX	PF01903	73 - 173	2.3e-31	CbiX

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50170 AT1G50170 AT1G50170
fragaria_vesca	FvH4_3g28470 FvH4_3g28470 FvH4_6g51400
malus_domestica	MD09G1028700.v1.1 MD17G1030300.v1.1
prunus_persica	Prupe.3G207400_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289700_v2.0.a1
pyrus_communis	pycom111g02280 pycom17g02770
rosa_chinensis	RchiOBHm_Chr1g0351301 RchiOBHm_Chr2g0173081 RchiOBHm_Chr7g0219921 RchiOBHm_Chr7g0228061 RchiOBHm_Chr7g0228091
rosa_laevigata	RLG00000022156
rosa_multiflora	Rmu_sc0011236.1_g000008 Rmu_sc0031614.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079260
rosa_rugosa	Rorug02G0565000
rosa_samantha	Rh2AG644900 Rh2BG655700 Rh2CG620800 Rh2DG669000 Rh7DG395300
rosa_wichuraiana	Rw2G052970 Rw7G033220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	368
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	2 cut(s)	226, 344
AciI	CCGC	1 cut(s)	39
AclWI	GGATC	1 cut(s)	152
AcsI	RAATTY	2 cut(s)	100, 130
AcyI	GRCGYC	1 cut(s)	201
AflIII	ACRYGT	2 cut(s)	267, 342
AgsI	TTSAA	4 cut(s)	333, 338, 349, 362
AjnI	CCWGG	2 cut(s)	406, 466
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	2 cut(s)	24, 452
AluI	AGCT	2 cut(s)	24, 452
Alw26I	GTCTC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	152
AoxI	GGCC	2 cut(s)	112, 499
ApeKI	GCWGC	1 cut(s)	452
ApoI	RAATTY	2 cut(s)	100, 130
AspLEI	GCGC	2 cut(s)	228, 493
AspS9I	GGNCC	1 cut(s)	113
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	496
BanI	GGYRCC	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	418
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	1 cut(s)	442
BceAI	ACGGC	2 cut(s)	213, 214
BcgI	CGANNNNNNTGC	2 cut(s)	127, 161
BciT130I	CCWGG	2 cut(s)	408, 468
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	189
BfaI	CTAG	2 cut(s)	126, 497
BfmI	CTRYAG	1 cut(s)	294
BisI	GCNGC	1 cut(s)	453
BlsI	GCNGC	1 cut(s)	454
Bme1390I	CCNGG	3 cut(s)	53, 408, 468
BmgT120I	GGNCC	1 cut(s)	113
BmiI	GGNNCC	4 cut(s)	86, 115, 303, 370
BmrFI	CCNGG	3 cut(s)	53, 408, 468
BmrI	ACTGGG	1 cut(s)	294
BmsI	GCATC	2 cut(s)	147, 472
BmuI	ACTGGG	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	418
BpuEI	CTTGAG	1 cut(s)	15
BpuMI	CCSGG	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	3 cut(s)	51, 178, 217
BsaWI	WCCGGW	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	289
BseBI	CCWGG	2 cut(s)	408, 468
BseDI	CCNNGG	3 cut(s)	51, 178, 217
BseGI	GGATG	2 cut(s)	434, 463
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	1 cut(s)	18
BseXI	GCAGC	1 cut(s)	439
Bsh1236I	CGCG	2 cut(s)	226, 344
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	114, 501
BshNI	GGYRCC	1 cut(s)	368
BsiEI	CGRYCG	1 cut(s)	60
BsiSI	CCGG	2 cut(s)	53, 82
BslFI	GGGAC	1 cut(s)	177
BsmAI	GTCTC	1 cut(s)	189
BsmBI	CGTCTC	1 cut(s)	189
BsmFI	GGGAC	1 cut(s)	177
BsnI	GGCC	2 cut(s)	114, 501
Bsp143I	GATC	1 cut(s)	144
Bsp19I	CCATGG	2 cut(s)	178, 217
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	2 cut(s)	114, 501
BspFNI	CGCG	2 cut(s)	226, 344
BspLI	GGNNCC	4 cut(s)	86, 115, 303, 370
BspPI	GGATC	1 cut(s)	152
BspT107I	GGYRCC	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	3 cut(s)	51, 178, 217
BssMI	GATC	1 cut(s)	144
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	2 cut(s)	178, 217
Bst2UI	CCWGG	2 cut(s)	408, 468
BstACI	GRCGYC	1 cut(s)	201
BstC8I	GCNNGC	2 cut(s)	224, 306
BstDSI	CCRYGG	2 cut(s)	178, 217
BstF5I	GGATG	2 cut(s)	434, 463
BstFNI	CGCG	2 cut(s)	226, 344
BstHHI	GCGC	2 cut(s)	228, 493
BstKTI	GATC	1 cut(s)	147
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	144
BstMCI	CGRYCG	1 cut(s)	60
BstNI	CCWGG	2 cut(s)	408, 468
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	3 cut(s)	51, 406, 466
BstSFI	CTRYAG	1 cut(s)	294
BstUI	CGCG	2 cut(s)	226, 344
BstV1I	GCAGC	1 cut(s)	439
BstV2I	GAAGAC	1 cut(s)	418
BstXI	CCANNNNNNTGG	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	114, 501
BtgI	CCRYGG	2 cut(s)	178, 217
BtsCI	GGATG	2 cut(s)	434, 463
Cac8I	GCNNGC	2 cut(s)	224, 306
CfoI	GCGC	2 cut(s)	228, 493
Cfr13I	GGNCC	1 cut(s)	113
CseI	GACGC	2 cut(s)	190, 350
CviAII	CATG	4 cut(s)	179, 218, 247, 268
CviJI	RGCY	9 cut(s)	24, 66, 87, 114, 222, 304, 390, 452, 501
CviKI_1	RGCY	9 cut(s)	24, 66, 87, 114, 222, 304, 390, 452, 501
DpnI	GATC	1 cut(s)	146
DpnII	GATC	1 cut(s)	144
Eco130I	CCWWGG	2 cut(s)	178, 217
Eco147I	AGGCCT	1 cut(s)	501
EcoO109I	RGGNCCY	1 cut(s)	113
EcoRII	CCWGG	2 cut(s)	406, 466
EcoT14I	CCWWGG	2 cut(s)	178, 217
ErhI	CCWWGG	2 cut(s)	178, 217
Esp3I	CGTCTC	1 cut(s)	189
FaeI	CATG	4 cut(s)	182, 221, 250, 271
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	4 cut(s)	178, 217, 246, 267
FauNDI	CATATG	1 cut(s)	312
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	1 cut(s)	453
FokI	GGATG	2 cut(s)	421, 450
Fsp4HI	GCNGC	1 cut(s)	453
FspBI	CTAG	2 cut(s)	126, 497
GlaI	GCGC	2 cut(s)	227, 492
GluI	GCNGC	1 cut(s)	453
HaeIII	GGCC	2 cut(s)	114, 501
HapII	CCGG	2 cut(s)	53, 82
HgaI	GACGC	2 cut(s)	190, 350
HhaI	GCGC	2 cut(s)	228, 493
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	4 cut(s)	182, 221, 250, 271
Hin6I	GCGC	2 cut(s)	226, 491
HinP1I	GCGC	2 cut(s)	226, 491
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	1 cut(s)	236
HpaII	CCGG	2 cut(s)	53, 82
HphI	GGTGA	1 cut(s)	496
Hpy166II	GTNNAC	2 cut(s)	214, 265
Hpy188III	TCNNGA	4 cut(s)	97, 142, 148, 338
Hpy8I	GTNNAC	2 cut(s)	214, 265
HpyAV	CCTTC	1 cut(s)	339
HpyCH4V	TGCA	2 cut(s)	106, 455
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	4 cut(s)	182, 221, 250, 271
HspAI	GCGC	2 cut(s)	226, 491
Kzo9I	GATC	1 cut(s)	144
LmnI	GCTCC	3 cut(s)	84, 301, 460
LpnPI	CCDG	9 cut(s)	66, 95, 270, 318, 393, 420, 452, 453, 480
Lsp1109I	GCAGC	1 cut(s)	439
LweI	GCATC	2 cut(s)	147, 472
MaeI	CTAG	2 cut(s)	126, 497
MaeIII	GTNAC	2 cut(s)	34, 484
MalI	GATC	1 cut(s)	146
MboI	GATC	1 cut(s)	144
MboII	GAAGA	1 cut(s)	423
MluCI	AATT	4 cut(s)	100, 130, 333, 349
MluI	ACGCGT	1 cut(s)	342
MnlI	CCTC	9 cut(s)	39, 98, 104, 127, 149, 254, 410, 504, 512
MseI	TTAA	1 cut(s)	134
MslI	CAYNNNNRTG	1 cut(s)	468
MspI	CCGG	2 cut(s)	53, 82
MspR9I	CCNGG	3 cut(s)	53, 408, 468
MvaI	CCWGG	2 cut(s)	408, 468
MvnI	CGCG	2 cut(s)	226, 344
NciI	CCSGG	1 cut(s)	53
NcoI	CCATGG	2 cut(s)	178, 217
NdeI	CATATG	1 cut(s)	312
NdeII	GATC	1 cut(s)	144
NlaIII	CATG	4 cut(s)	182, 221, 250, 271
NlaIV	GGNNCC	4 cut(s)	86, 115, 303, 370
NmuCI	GTSAC	1 cut(s)	484
NspI	RCATGY	1 cut(s)	271
PceI	AGGCCT	1 cut(s)	501
PciI	ACATGT	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	236
PflFI	GACNNNGTC	1 cut(s)	200
PkrI	GCNGC	1 cut(s)	454
PscI	ACATGT	1 cut(s)	267
Psp6I	CCWGG	2 cut(s)	406, 466
PspGI	CCWGG	2 cut(s)	406, 466
PspN4I	GGNNCC	4 cut(s)	86, 115, 303, 370
PspPI	GGNCC	1 cut(s)	113
PsyI	GACNNNGTC	1 cut(s)	200
RseI	CAYNNNNRTG	1 cut(s)	468
SalI	GTCGAC	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	134
SatI	GCNGC	1 cut(s)	453
Sau3AI	GATC	1 cut(s)	144
Sau96I	GGNCC	1 cut(s)	113
ScrFI	CCNGG	3 cut(s)	53, 408, 468
SetI	ASST	5 cut(s)	26, 246, 331, 370, 454
SfaNI	GCATC	2 cut(s)	147, 472
SfcI	CTRYAG	1 cut(s)	294
SmiMI	CAYNNNNRTG	1 cut(s)	468
SmlI	CTYRAG	1 cut(s)	30
SmoI	CTYRAG	1 cut(s)	30
Sse9I	AATT	4 cut(s)	100, 130, 333, 349
SseBI	AGGCCT	1 cut(s)	501
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	2 cut(s)	126, 497
StuI	AGGCCT	1 cut(s)	501
StyD4I	CCNGG	3 cut(s)	51, 406, 466
StyI	CCWWGG	2 cut(s)	178, 217
TaqI	TCGA	3 cut(s)	5, 98, 213
TaqII	GACCGA	1 cut(s)	74
TasI	AATT	4 cut(s)	100, 130, 333, 349
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	1 cut(s)	452
Tsp45I	GTSAC	1 cut(s)	484
Tth111I	GACNNNGTC	1 cut(s)	200
XapI	RAATTY	2 cut(s)	100, 130
XceI	RCATGY	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	414
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	2 cut(s)	126, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.