Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0003862

Physical Location & Seq

Genomic Coordinates Forward (+)

2194078 .. 2202223

Gene Structure 8146 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1030300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGTCTACTTCCACTGGACCGTTGAAGTTCTCGGCTCTTCGCCCCCAAAACATGTCGGTTAGGTCGTTATCCATCCGCCCCCAATTTACCGCCAAAAGTCGAAGCTCGCCGGCGAGCGAAATCGGAGCAAGCCCTGGCTGCGCAGTTCTCAACTTCTCAAATTTGCAGAGAGGCCCCTCAAGAAGTAGAAATTTGAGCTTGAGGTTGTGTATGGGTAGCGGCAATGGAGGATTTGGACAGAACCCTCATGGGGTCGGCGACAAAGATGGTGTCATCATCGTCGACCACGGTTCGCGCCGCAAGGAATCAAATCTCATGTTAAATGAGTTCGTGAGCATGTTTAGAGAGAGAACTGGGTACCTAATTGTGGAGCCTGCTCATATGTTTCAGTTGGATGTTGAGTTGGCGGAACCATCAATTCAGGATGCATTCAATTCGTGTGTTGAACAAGGGGCTAATCGTGTAATTGTGAGCCCGTTCTTCCTCTTACCGGGAAGACATTGGAACCAGGACATTCCATCCCTGACAGCTGAAGCTGCAAAGGAGCATCCTGGTGTCTCGTATATAGTAACCGCACCCCTCGGCCTCCATCCGCTACTTGTGGATGTTATGAATGATAGGATCAATCACTGCTTAAGCCGTGTTGCTGGAGAAGCAGAGGAGTGCGCCGTTTGTGCTGGAACAAACAAATGTCAGCTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0018130 GO:0019354 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046156 GO:0046483 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0051266 GO:0051536 GO:0051540 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

CbiX

Protein Analysis

235

Amino Acids

25.35

Weight (kDa)

7.67

Isoelectric Point (pI)

49.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CbiX	PF01903	96 - 205	1.8e-28	CbiX

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50170 AT1G50170 AT1G50170
fragaria_vesca	FvH4_3g28470 FvH4_3g28470 FvH4_6g51400
malus_domestica	MD09G1028700.v1.1 MD17G1030300.v1.1
prunus_persica	Prupe.3G207400_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289700_v2.0.a1
pyrus_communis	pycom111g02280 pycom17g02770
rosa_chinensis	RchiOBHm_Chr1g0351301 RchiOBHm_Chr2g0173081 RchiOBHm_Chr7g0219921 RchiOBHm_Chr7g0228061 RchiOBHm_Chr7g0228091
rosa_laevigata	RLG00000022156
rosa_multiflora	Rmu_sc0011236.1_g000008 Rmu_sc0031614.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079260
rosa_rugosa	Rorug02G0565000
rosa_samantha	Rh2AG644900 Rh2BG655700 Rh2CG620800 Rh2DG669000 Rh7DG395300
rosa_wichuraiana	Rw2G052970 Rw7G033220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	142
Acc65I	GGTACC	1 cut(s)	357
AccB1I	GGYRCC	1 cut(s)	357
AccI	GTMKAC	2 cut(s)	5, 282
AccII	CGCG	1 cut(s)	295
AciI	CCGC	7 cut(s)	76, 90, 219, 298, 407, 573, 593
AclWI	GGATC	1 cut(s)	629
AcsI	RAATTY	2 cut(s)	160, 190
AcuI	CTGAAG	1 cut(s)	552
AfaI	GTAC	1 cut(s)	359
AfiI	CCNNNNNNNGG	3 cut(s)	250, 367, 490
AflII	CTTAAG	1 cut(s)	634
AflIII	ACRYGT	1 cut(s)	51
AgsI	TTSAA	3 cut(s)	25, 433, 446
AjnI	CCWGG	3 cut(s)	133, 507, 550
AluBI	AGCT	5 cut(s)	105, 198, 530, 536, 697
AluI	AGCT	5 cut(s)	105, 198, 530, 536, 697
Alw26I	GTCTC	1 cut(s)	562
AlwI	GGATC	1 cut(s)	629
AoxI	GGCC	2 cut(s)	172, 583
ApeKI	GCWGC	2 cut(s)	138, 536
ApoI	RAATTY	2 cut(s)	160, 190
ArsI	GACNNNNNNTTYG	2 cut(s)	255, 287
Asp718I	GGTACC	1 cut(s)	357
AspLEI	GCGC	3 cut(s)	143, 297, 668
AspS9I	GGNCC	2 cut(s)	17, 173
AsuC2I	CCSGG	1 cut(s)	492
AvaII	GGWCC	1 cut(s)	17
BanI	GGYRCC	1 cut(s)	357
BanII	GRGCYC	1 cut(s)	476
BbsI	GAAGAC	1 cut(s)	502
BbvI	GCAGC	2 cut(s)	125, 523
BccI	CCATC	5 cut(s)	80, 260, 421, 526, 597
BceAI	ACGGC	2 cut(s)	624, 653
BcgI	CGANNNNNNTGC	2 cut(s)	417, 451
BciT130I	CCWGG	3 cut(s)	135, 509, 552
BcnI	CCSGG	1 cut(s)	492
BcoDI	GTCTC	1 cut(s)	562
BfrI	CTTAAG	1 cut(s)	634
BisI	GCNGC	4 cut(s)	139, 220, 298, 537
BlsI	GCNGC	4 cut(s)	140, 221, 299, 538
Bme1390I	CCNGG	4 cut(s)	135, 492, 509, 552
Bme18I	GGWCC	1 cut(s)	17
BmgT120I	GGNCC	2 cut(s)	17, 173
BmiI	GGNNCC	5 cut(s)	175, 359, 372, 411, 506
BmrFI	CCNGG	4 cut(s)	135, 492, 509, 552
BmrI	ACTGGG	1 cut(s)	363
BmsI	GCATC	2 cut(s)	415, 556
BmuI	ACTGGG	1 cut(s)	363
BpiI	GAAGAC	1 cut(s)	502
BpmI	CTGGAG	1 cut(s)	669
BpuEI	CTTGAG	2 cut(s)	163, 220
BpuMI	CCSGG	1 cut(s)	492
BsaJI	CCNNGG	3 cut(s)	133, 286, 580
Bsc4I	CCNNNNNNNGG	3 cut(s)	250, 367, 490
Bse118I	RCCGGY	1 cut(s)	109
Bse1I	ACTGG	2 cut(s)	19, 358
Bse3DI	GCAATG	1 cut(s)	229
BseBI	CCWGG	3 cut(s)	135, 509, 552
BseDI	CCNNGG	3 cut(s)	133, 286, 580
BseGI	GGATG	7 cut(s)	72, 400, 430, 518, 547, 589, 610
BseLI	CCNNNNNNNGG	3 cut(s)	250, 367, 490
BseMI	GCAATG	1 cut(s)	229
BseNI	ACTGG	2 cut(s)	19, 358
BseRI	GAGGAG	1 cut(s)	674
BseXI	GCAGC	2 cut(s)	125, 523
Bsh1236I	CGCG	1 cut(s)	295
BshFI	GGCC	2 cut(s)	174, 585
BshNI	GGYRCC	1 cut(s)	357
BsiSI	CCGG	2 cut(s)	110, 491
BslI	CCNNNNNNNGG	3 cut(s)	250, 367, 490
BsmAI	GTCTC	1 cut(s)	562
BsmI	GAATGC	1 cut(s)	428
BsnI	GGCC	2 cut(s)	174, 585
Bsp1286I	GDGCHC	1 cut(s)	476
Bsp143I	GATC	1 cut(s)	621
BspACI	CCGC	7 cut(s)	76, 90, 219, 298, 407, 573, 593
BspANI	GGCC	2 cut(s)	174, 585
BspFNI	CGCG	1 cut(s)	295
BspLI	GGNNCC	5 cut(s)	175, 359, 372, 411, 506
BspPI	GGATC	1 cut(s)	629
BspQI	GCTCTTC	1 cut(s)	42
BspT107I	GGYRCC	1 cut(s)	357
BspTI	CTTAAG	1 cut(s)	634
BsrDI	GCAATG	1 cut(s)	229
BsrFI	RCCGGY	1 cut(s)	109
BsrI	ACTGG	2 cut(s)	19, 358
BssAI	RCCGGY	1 cut(s)	109
BssECI	CCNNGG	3 cut(s)	133, 286, 580
BssMI	GATC	1 cut(s)	621
Bst2UI	CCWGG	3 cut(s)	135, 509, 552
Bst4CI	ACNGT	2 cut(s)	21, 290
Bst6I	CTCTTC	1 cut(s)	42
BstAFI	CTTAAG	1 cut(s)	634
BstC8I	GCNNGC	5 cut(s)	107, 111, 115, 130, 375
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	7 cut(s)	72, 400, 430, 518, 547, 589, 610
BstFNI	CGCG	1 cut(s)	295
BstHHI	GCGC	3 cut(s)	143, 297, 668
BstKTI	GATC	1 cut(s)	624
BstMAI	GTCTC	1 cut(s)	562
BstMBI	GATC	1 cut(s)	621
BstMWI	GCNNNNNNNGC	4 cut(s)	138, 536, 653, 674
BstNI	CCWGG	3 cut(s)	135, 509, 552
BstNSI	RCATGY	2 cut(s)	55, 340
BstSCI	CCNGG	4 cut(s)	133, 490, 507, 550
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	2 cut(s)	125, 523
BstV2I	GAAGAC	1 cut(s)	502
BsuRI	GGCC	2 cut(s)	174, 585
BtgI	CCRYGG	1 cut(s)	286
BtsCI	GGATG	7 cut(s)	72, 400, 430, 518, 547, 589, 610
BtsI	GCAGTG	1 cut(s)	628
BtsIMutI	CAGTG	2 cut(s)	12, 628
Cac8I	GCNNGC	5 cut(s)	107, 111, 115, 130, 375
CfoI	GCGC	3 cut(s)	143, 297, 668
Cfr10I	RCCGGY	1 cut(s)	109
Cfr13I	GGNCC	2 cut(s)	17, 173
Csp6I	GTAC	1 cut(s)	358
CviAII	CATG	4 cut(s)	52, 248, 316, 337
CviQI	GTAC	1 cut(s)	358
DpnI	GATC	1 cut(s)	623
DpnII	GATC	1 cut(s)	621
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
EciI	GGCGGA	2 cut(s)	65, 422
Eco24I	GRGCYC	1 cut(s)	476
Eco47I	GGWCC	1 cut(s)	17
Eco57I	CTGAAG	1 cut(s)	552
EcoO109I	RGGNCCY	1 cut(s)	173
EcoRII	CCWGG	3 cut(s)	133, 507, 550
EcoT22I	ATGCAT	1 cut(s)	430
EcoT38I	GRGCYC	1 cut(s)	476
FaeI	CATG	4 cut(s)	55, 251, 319, 340
FatI	CATG	4 cut(s)	51, 247, 315, 336
FauNDI	CATATG	1 cut(s)	381
FblI	GTMKAC	2 cut(s)	5, 282
Fnu4HI	GCNGC	4 cut(s)	139, 220, 298, 537
FokI	GGATG	7 cut(s)	59, 407, 437, 505, 534, 576, 617
FriOI	GRGCYC	1 cut(s)	476
Fsp4HI	GCNGC	4 cut(s)	139, 220, 298, 537
FspI	TGCGCA	1 cut(s)	142
GlaI	GCGC	3 cut(s)	142, 296, 667
GluI	GCNGC	4 cut(s)	139, 220, 298, 537
GsuI	CTGGAG	1 cut(s)	669
HaeIII	GGCC	2 cut(s)	174, 585
HapII	CCGG	2 cut(s)	110, 491
HhaI	GCGC	3 cut(s)	143, 297, 668
Hin1II	CATG	4 cut(s)	55, 251, 319, 340
Hin6I	GCGC	3 cut(s)	141, 295, 666
HinP1I	GCGC	3 cut(s)	141, 295, 666
HincII	GTYRAC	1 cut(s)	283
HindII	GTYRAC	1 cut(s)	283
HinfI	GANTC	1 cut(s)	305
HpaII	CCGG	2 cut(s)	110, 491
Hpy166II	GTNNAC	2 cut(s)	6, 283
Hpy188I	TCNGA	1 cut(s)	125
Hpy188III	TCNNGA	3 cut(s)	180, 331, 422
Hpy8I	GTNNAC	2 cut(s)	6, 283
Hpy99I	CGWCG	1 cut(s)	284
HpyCH4III	ACNGT	2 cut(s)	21, 290
HpyCH4V	TGCA	3 cut(s)	166, 428, 539
HpyF10VI	GCNNNNNNNGC	4 cut(s)	138, 536, 653, 674
Hsp92II	CATG	4 cut(s)	55, 251, 319, 340
HspAI	GCGC	3 cut(s)	141, 295, 666
KpnI	GGTACC	1 cut(s)	361
KroI	GCCGGC	1 cut(s)	109
KroNI	GCCGGC	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	621
LguI	GCTCTTC	1 cut(s)	42
LmnI	GCTCC	4 cut(s)	125, 370, 544, 702
Lsp1109I	GCAGC	2 cut(s)	125, 523
LweI	GCATC	2 cut(s)	415, 556
MaeIII	GTNAC	1 cut(s)	568
MalI	GATC	1 cut(s)	623
MboI	GATC	1 cut(s)	621
MboII	GAAGA	3 cut(s)	29, 472, 507
MhlI	GDGCHC	1 cut(s)	476
MluCI	AATT	7 cut(s)	83, 160, 190, 363, 417, 433, 465
MmeI	TCCRAC	1 cut(s)	372
MnlI	CCTC	9 cut(s)	164, 187, 195, 221, 255, 494, 590, 596, 652
Mph1103I	ATGCAT	1 cut(s)	430
MreI	CGCCGGCG	1 cut(s)	109
MroNI	GCCGGC	1 cut(s)	109
MseI	TTAA	2 cut(s)	320, 635
MslI	CAYNNNNRTG	1 cut(s)	552
MspA1I	CMGCKG	1 cut(s)	530
MspCI	CTTAAG	1 cut(s)	634
MspI	CCGG	2 cut(s)	110, 491
MspR9I	CCNGG	4 cut(s)	135, 492, 509, 552
Mva1269I	GAATGC	1 cut(s)	428
MvaI	CCWGG	3 cut(s)	135, 509, 552
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	4 cut(s)	138, 536, 653, 674
NaeI	GCCGGC	1 cut(s)	111
NciI	CCSGG	1 cut(s)	492
NdeI	CATATG	1 cut(s)	381
NdeII	GATC	1 cut(s)	621
NgoMIV	GCCGGC	1 cut(s)	109
NlaIII	CATG	4 cut(s)	55, 251, 319, 340
NlaIV	GGNNCC	5 cut(s)	175, 359, 372, 411, 506
NmeAIII	GCCGAG	2 cut(s)	11, 561
NsbI	TGCGCA	1 cut(s)	142
NsiI	ATGCAT	1 cut(s)	430
NspI	RCATGY	2 cut(s)	55, 340
PciI	ACATGT	1 cut(s)	51
PciSI	GCTCTTC	1 cut(s)	42
PcsI	WCGNNNNNNNCGW	1 cut(s)	62
PctI	GAATGC	1 cut(s)	428
PdiI	GCCGGC	1 cut(s)	111
PfeI	GAWTC	1 cut(s)	305
PkrI	GCNGC	4 cut(s)	140, 221, 299, 538
PscI	ACATGT	1 cut(s)	51
Psp6I	CCWGG	3 cut(s)	133, 507, 550
PspGI	CCWGG	3 cut(s)	133, 507, 550
PspN4I	GGNNCC	5 cut(s)	175, 359, 372, 411, 506
PspPI	GGNCC	2 cut(s)	17, 173
PvuII	CAGCTG	1 cut(s)	530
RsaI	GTAC	1 cut(s)	359
RsaNI	GTAC	1 cut(s)	358
RseI	CAYNNNNRTG	1 cut(s)	552
SalI	GTCGAC	1 cut(s)	281
SapI	GCTCTTC	1 cut(s)	42
SaqAI	TTAA	2 cut(s)	320, 635
SatI	GCNGC	4 cut(s)	139, 220, 298, 537
Sau3AI	GATC	1 cut(s)	621
Sau96I	GGNCC	2 cut(s)	17, 173
ScrFI	CCNGG	4 cut(s)	135, 492, 509, 552
SduI	GDGCHC	1 cut(s)	476
SetI	ASST	8 cut(s)	65, 107, 200, 206, 363, 532, 538, 699
SfaNI	GCATC	2 cut(s)	415, 556
SgrAI	CRCCGGYG	1 cut(s)	109
SinI	GGWCC	1 cut(s)	17
SmiMI	CAYNNNNRTG	1 cut(s)	552
SmlI	CTYRAG	3 cut(s)	178, 199, 634
SmoI	CTYRAG	3 cut(s)	178, 199, 634
Sse9I	AATT	7 cut(s)	83, 160, 190, 363, 417, 433, 465
SsiI	CCGC	7 cut(s)	76, 90, 219, 298, 407, 573, 593
StyD4I	CCNGG	4 cut(s)	133, 490, 507, 550
TaaI	ACNGT	2 cut(s)	21, 290
TaqI	TCGA	2 cut(s)	100, 282
TasI	AATT	7 cut(s)	83, 160, 190, 363, 417, 433, 465
TauI	GCSGC	2 cut(s)	222, 300
TfiI	GAWTC	1 cut(s)	305
Tru1I	TTAA	2 cut(s)	320, 635
Tru9I	TTAA	2 cut(s)	320, 635
TscAI	CASTG	2 cut(s)	19, 635
TseI	GCWGC	2 cut(s)	138, 536
TspDTI	ATGAA	1 cut(s)	626
TspRI	CASTG	2 cut(s)	19, 635
Vha464I	CTTAAG	1 cut(s)	634
VpaK11BI	GGWCC	1 cut(s)	17
XapI	RAATTY	2 cut(s)	160, 190
XceI	RCATGY	2 cut(s)	55, 340
XmiI	GTMKAC	2 cut(s)	5, 282
Zsp2I	ATGCAT	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.