Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003862

Physical Location & Seq

Genomic Coordinates Reverse (-)

2287950 .. 2289502

Gene Structure 1553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00079260.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTCGATTGGGTCGTTGTTCAGCTCTCCTCAATTTACCGCTAAAATTTTCCCGGCAACCGACAGCCGAACAAACCCTAACCGGAGCCTCAACTTCTCGAATTTGCAGAGAGGCCCCTCCAGAACTAGAAATTTAAGCATCGGGACCTGGAATCGAGGATTGGGACAAACTAATCCCCATGGCGTTGGCGACAGAGACGGCGTCATCATCGTCGACCATGGCTCGCGCCGTAAGGAATCAAACCTCATGCTAAATGAGTTTGTGGACATGTTTAGGGAGAGAACTGGGTATGCTATAGTGGAGCCTGCTCATATGGAGTTGGCAGAACCTTCAATTCAAGACGCGTTCAATTCGTGTGTTGAACAAGGTGCCAACCGTGTTATTGTTAGCCCCTTTTTCCTCCTACCAGGAAGACATTGGAACAAGGACATTCCATCCCTGACAGCCGAAGCTGCAAAGGAGCATCCTGGTGTGTCATATATGGTGACTGCGCCTCTAGGCCTCCATCCACTACTTGTGGATGTTATGAATGACAGAATCAATCACTGCTTGAGCCATGTTGCTGGAGATGCAGCTGAGTGTGCTGTTTGTGTTGGAACAGGCAAATGCCAGCTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0018130 GO:0019354 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046156 GO:0046483 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0051266 GO:0051536 GO:0051540 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

CbiX

Protein Analysis

206

Amino Acids

22.55

Weight (kDa)

6.75

Isoelectric Point (pI)

36.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CbiX	PF01903	73 - 177	1e-32	CbiX

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50170 AT1G50170 AT1G50170
fragaria_vesca	FvH4_3g28470 FvH4_3g28470 FvH4_6g51400
malus_domestica	MD09G1028700.v1.1 MD17G1030300.v1.1
prunus_persica	Prupe.3G207400_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289700_v2.0.a1
pyrus_communis	pycom111g02280 pycom17g02770
rosa_chinensis	RchiOBHm_Chr1g0351301 RchiOBHm_Chr2g0173081 RchiOBHm_Chr7g0219921 RchiOBHm_Chr7g0228061 RchiOBHm_Chr7g0228091
rosa_laevigata	RLG00000022156
rosa_multiflora	Rmu_sc0011236.1_g000008 Rmu_sc0031614.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079260
rosa_rugosa	Rorug02G0565000
rosa_samantha	Rh2AG644900 Rh2BG655700 Rh2CG620800 Rh2DG669000 Rh7DG395300
rosa_wichuraiana	Rw2G052970 Rw7G033220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	368
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	2 cut(s)	226, 344
AciI	CCGC	1 cut(s)	39
AcsI	RAATTY	3 cut(s)	45, 100, 130
AcyI	GRCGYC	1 cut(s)	201
AflIII	ACRYGT	2 cut(s)	267, 342
AgsI	TTSAA	4 cut(s)	333, 338, 349, 362
AjnI	CCWGG	3 cut(s)	146, 406, 466
AjuI	GAANNNNNNNTTGG	2 cut(s)	143, 175
AluBI	AGCT	4 cut(s)	24, 452, 575, 613
AluI	AGCT	4 cut(s)	24, 452, 575, 613
Alw26I	GTCTC	1 cut(s)	189
AoxI	GGCC	2 cut(s)	112, 499
ApeKI	GCWGC	2 cut(s)	452, 572
ApoI	RAATTY	3 cut(s)	45, 100, 130
AspLEI	GCGC	2 cut(s)	228, 493
AspS9I	GGNCC	2 cut(s)	113, 144
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	1 cut(s)	496
AvaII	GGWCC	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	368
BbsI	GAAGAC	1 cut(s)	418
BbvI	GCAGC	2 cut(s)	439, 584
BccI	CCATC	2 cut(s)	442, 513
BceAI	ACGGC	2 cut(s)	213, 214
BciT130I	CCWGG	3 cut(s)	148, 408, 468
BcnI	CCSGG	1 cut(s)	53
BcoDI	GTCTC	1 cut(s)	189
BfaI	CTAG	2 cut(s)	126, 497
BfmI	CTRYAG	1 cut(s)	294
BisI	GCNGC	2 cut(s)	453, 573
BlsI	GCNGC	2 cut(s)	454, 574
Bme1390I	CCNGG	4 cut(s)	53, 148, 408, 468
Bme18I	GGWCC	1 cut(s)	144
BmgT120I	GGNCC	2 cut(s)	113, 144
BmiI	GGNNCC	5 cut(s)	86, 115, 145, 303, 370
BmrFI	CCNGG	4 cut(s)	53, 148, 408, 468
BmrI	ACTGGG	1 cut(s)	294
BmsI	GCATC	3 cut(s)	147, 472, 559
BmuI	ACTGGG	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	418
BpmI	CTGGAG	2 cut(s)	103, 585
BpuEI	CTTGAG	1 cut(s)	571
BpuMI	CCSGG	1 cut(s)	53
BsaHI	GRCGYC	1 cut(s)	201
BsaJI	CCNNGG	2 cut(s)	178, 217
BsaWI	WCCGGW	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	289
BseBI	CCWGG	3 cut(s)	148, 408, 468
BseDI	CCNNGG	2 cut(s)	178, 217
BseGI	GGATG	4 cut(s)	434, 463, 505, 526
BseMII	CTCAG	1 cut(s)	567
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	1 cut(s)	18
BseXI	GCAGC	2 cut(s)	439, 584
Bsh1236I	CGCG	2 cut(s)	226, 344
BshFI	GGCC	2 cut(s)	114, 501
BshNI	GGYRCC	1 cut(s)	368
BsiSI	CCGG	2 cut(s)	53, 82
BslFI	GGGAC	2 cut(s)	157, 177
BsmAI	GTCTC	1 cut(s)	189
BsmBI	CGTCTC	1 cut(s)	189
BsmFI	GGGAC	2 cut(s)	157, 177
BsnI	GGCC	2 cut(s)	114, 501
Bsp19I	CCATGG	2 cut(s)	178, 217
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	2 cut(s)	114, 501
BspCNI	CTCAG	1 cut(s)	568
BspFNI	CGCG	2 cut(s)	226, 344
BspLI	GGNNCC	5 cut(s)	86, 115, 145, 303, 370
BspT107I	GGYRCC	1 cut(s)	368
BsrI	ACTGG	1 cut(s)	289
BssECI	CCNNGG	2 cut(s)	178, 217
BssNI	GRCGYC	1 cut(s)	201
BssT1I	CCWWGG	2 cut(s)	178, 217
Bst2UI	CCWGG	3 cut(s)	148, 408, 468
Bst4CI	ACNGT	1 cut(s)	377
BstACI	GRCGYC	1 cut(s)	201
BstC8I	GCNNGC	3 cut(s)	224, 306, 611
BstDEI	CTNAG	1 cut(s)	576
BstDSI	CCRYGG	2 cut(s)	178, 217
BstF5I	GGATG	4 cut(s)	434, 463, 505, 526
BstFNI	CGCG	2 cut(s)	226, 344
BstHHI	GCGC	2 cut(s)	228, 493
BstMAI	GTCTC	1 cut(s)	189
BstMWI	GCNNNNNNNGC	3 cut(s)	452, 569, 581
BstNI	CCWGG	3 cut(s)	148, 408, 468
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	4 cut(s)	51, 146, 406, 466
BstSFI	CTRYAG	1 cut(s)	294
BstUI	CGCG	2 cut(s)	226, 344
BstV1I	GCAGC	2 cut(s)	439, 584
BstV2I	GAAGAC	1 cut(s)	418
BstXI	CCANNNNNNTGG	2 cut(s)	185, 563
BsuRI	GGCC	2 cut(s)	114, 501
BtgI	CCRYGG	2 cut(s)	178, 217
BtsCI	GGATG	4 cut(s)	434, 463, 505, 526
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	1 cut(s)	544
Cac8I	GCNNGC	3 cut(s)	224, 306, 611
CfoI	GCGC	2 cut(s)	228, 493
Cfr13I	GGNCC	2 cut(s)	113, 144
CseI	GACGC	2 cut(s)	190, 350
CviAII	CATG	5 cut(s)	179, 218, 247, 268, 557
DdeI	CTNAG	1 cut(s)	576
Eco130I	CCWWGG	2 cut(s)	178, 217
Eco147I	AGGCCT	1 cut(s)	501
Eco47I	GGWCC	1 cut(s)	144
EcoO109I	RGGNCCY	2 cut(s)	113, 144
EcoRII	CCWGG	3 cut(s)	146, 406, 466
EcoT14I	CCWWGG	2 cut(s)	178, 217
ErhI	CCWWGG	2 cut(s)	178, 217
Esp3I	CGTCTC	1 cut(s)	189
FaeI	CATG	5 cut(s)	182, 221, 250, 271, 560
FaqI	GGGAC	2 cut(s)	157, 177
FatI	CATG	5 cut(s)	178, 217, 246, 267, 556
FauNDI	CATATG	1 cut(s)	312
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	453, 573
FokI	GGATG	4 cut(s)	421, 450, 492, 533
Fsp4HI	GCNGC	2 cut(s)	453, 573
FspBI	CTAG	2 cut(s)	126, 497
GlaI	GCGC	2 cut(s)	227, 492
GluI	GCNGC	2 cut(s)	453, 573
GsuI	CTGGAG	2 cut(s)	103, 585
HaeIII	GGCC	2 cut(s)	114, 501
HapII	CCGG	2 cut(s)	53, 82
HgaI	GACGC	2 cut(s)	190, 350
HhaI	GCGC	2 cut(s)	228, 493
Hin1I	GRCGYC	1 cut(s)	201
Hin1II	CATG	5 cut(s)	182, 221, 250, 271, 560
Hin6I	GCGC	2 cut(s)	226, 491
HinP1I	GCGC	2 cut(s)	226, 491
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	3 cut(s)	151, 236, 537
HpaII	CCGG	2 cut(s)	53, 82
HphI	GGTGA	1 cut(s)	496
Hpy166II	GTNNAC	2 cut(s)	214, 265
Hpy188III	TCNNGA	4 cut(s)	97, 120, 142, 338
Hpy8I	GTNNAC	2 cut(s)	214, 265
Hpy99I	CGWCG	1 cut(s)	215
HpyAV	CCTTC	1 cut(s)	339
HpyCH4III	ACNGT	1 cut(s)	377
HpyCH4V	TGCA	3 cut(s)	106, 455, 572
HpyF10VI	GCNNNNNNNGC	3 cut(s)	452, 569, 581
HpyF3I	CTNAG	1 cut(s)	576
Hsp92I	GRCGYC	1 cut(s)	201
Hsp92II	CATG	5 cut(s)	182, 221, 250, 271, 560
HspAI	GCGC	2 cut(s)	226, 491
LmnI	GCTCC	4 cut(s)	84, 301, 460, 618
Lsp1109I	GCAGC	2 cut(s)	439, 584
LweI	GCATC	3 cut(s)	147, 472, 559
MaeI	CTAG	2 cut(s)	126, 497
MaeIII	GTNAC	1 cut(s)	484
MboII	GAAGA	1 cut(s)	423
MluCI	AATT	6 cut(s)	32, 45, 100, 130, 333, 349
MluI	ACGCGT	1 cut(s)	342
MmeI	TCCRAC	1 cut(s)	574
MnlI	CCTC	9 cut(s)	39, 98, 104, 127, 149, 254, 410, 504, 512
MseI	TTAA	1 cut(s)	134
MslI	CAYNNNNRTG	1 cut(s)	468
MspA1I	CMGCKG	1 cut(s)	575
MspI	CCGG	2 cut(s)	53, 82
MspR9I	CCNGG	4 cut(s)	53, 148, 408, 468
MvaI	CCWGG	3 cut(s)	148, 408, 468
MvnI	CGCG	2 cut(s)	226, 344
MwoI	GCNNNNNNNGC	3 cut(s)	452, 569, 581
NciI	CCSGG	1 cut(s)	53
NcoI	CCATGG	2 cut(s)	178, 217
NdeI	CATATG	1 cut(s)	312
NlaIII	CATG	5 cut(s)	182, 221, 250, 271, 560
NlaIV	GGNNCC	5 cut(s)	86, 115, 145, 303, 370
NmuCI	GTSAC	1 cut(s)	484
NspI	RCATGY	1 cut(s)	271
PceI	AGGCCT	1 cut(s)	501
PciI	ACATGT	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PfeI	GAWTC	3 cut(s)	151, 236, 537
PflFI	GACNNNGTC	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	454, 574
PpuMI	RGGWCCY	1 cut(s)	144
PscI	ACATGT	1 cut(s)	267
Psp5II	RGGWCCY	1 cut(s)	144
Psp6I	CCWGG	3 cut(s)	146, 406, 466
PspGI	CCWGG	3 cut(s)	146, 406, 466
PspN4I	GGNNCC	5 cut(s)	86, 115, 145, 303, 370
PspPI	GGNCC	2 cut(s)	113, 144
PspPPI	RGGWCCY	1 cut(s)	144
PsyI	GACNNNGTC	1 cut(s)	200
PvuII	CAGCTG	1 cut(s)	575
RseI	CAYNNNNRTG	1 cut(s)	468
SalI	GTCGAC	1 cut(s)	212
SaqAI	TTAA	1 cut(s)	134
SatI	GCNGC	2 cut(s)	453, 573
Sau96I	GGNCC	2 cut(s)	113, 144
ScrFI	CCNGG	4 cut(s)	53, 148, 408, 468
SetI	ASST	8 cut(s)	26, 149, 246, 331, 370, 454, 577, 615
SfaNI	GCATC	3 cut(s)	147, 472, 559
SfcI	CTRYAG	1 cut(s)	294
SinI	GGWCC	1 cut(s)	144
SmiMI	CAYNNNNRTG	1 cut(s)	468
SmlI	CTYRAG	1 cut(s)	550
SmoI	CTYRAG	1 cut(s)	550
Sse9I	AATT	6 cut(s)	32, 45, 100, 130, 333, 349
SseBI	AGGCCT	1 cut(s)	501
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	2 cut(s)	126, 497
StuI	AGGCCT	1 cut(s)	501
StyD4I	CCNGG	4 cut(s)	51, 146, 406, 466
StyI	CCWWGG	2 cut(s)	178, 217
TaaI	ACNGT	1 cut(s)	377
TaqI	TCGA	4 cut(s)	5, 98, 154, 213
TasI	AATT	6 cut(s)	32, 45, 100, 130, 333, 349
TfiI	GAWTC	3 cut(s)	151, 236, 537
Tru1I	TTAA	1 cut(s)	134
Tru9I	TTAA	1 cut(s)	134
TscAI	CASTG	1 cut(s)	551
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	2 cut(s)	452, 572
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	1 cut(s)	542
TspRI	CASTG	1 cut(s)	551
Tth111I	GACNNNGTC	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	144
XapI	RAATTY	3 cut(s)	45, 100, 130
XceI	RCATGY	1 cut(s)	271
XcmI	CCANNNNNNNNNTGG	1 cut(s)	414
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	2 cut(s)	126, 497

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.