Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

SuperScaffold_111

Orthogroup ID

OG0003862

Physical Location & Seq

Genomic Coordinates Forward (+)

1365913 .. 1366891

Gene Structure 979 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom111g02280.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTCGTTTAGGTCGGTATCCACCCGCCCCCAATTTACCGCCAAAAGCTCACCGGCGACCGAAATCGGAGCAAGCCCTAGCTGCGCAGTCCTCAACTTCTCGAATTTGCAGAGAGGCCCCTCAAGAAATGGAAATTTGAGCAGAAGGTTGTGCAGGGGTAGCGCCAATGGACTTTTCGGACAGAACCCTCACGGGGTCTGTGACGGAGATGGGGTCATCATCCTCGACCATGGTTCGCGCCGCAAGGAATCAAATCTCATGCTAAATGAGTTCGTGAGCATGTTTAGAGAGCGAACTGGGTACCCAATTGTGGAGGCAGCTCATATGGAGTTGGCGGAACCATCAATTCGGGATGCATTCAGTTCATGCGTTGAACAAGGGGCGAATCGTGTTGTTGTGAGCCCGTTTTTCCTCTCACCTGGTAGGCATTGGAATAAGGACATTCCGTCCCTGACAGCTGAAGCTGCAAAGGAGCATTCTGGTGTATCTTATATAGTAACTGCGCCTCTTGGCCTCCATCATCTACTCGTGGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0018130 GO:0019354 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046156 GO:0046483 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0051266 GO:0051536 GO:0051540 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

CbiX

Protein Analysis

179

Amino Acids

19.29

Weight (kDa)

8.84

Isoelectric Point (pI)

53.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50170 AT1G50170 AT1G50170
fragaria_vesca	FvH4_3g28470 FvH4_3g28470 FvH4_6g51400
malus_domestica	MD09G1028700.v1.1 MD17G1030300.v1.1
prunus_persica	Prupe.3G207400_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289700_v2.0.a1
pyrus_communis	pycom111g02280 pycom17g02770
rosa_chinensis	RchiOBHm_Chr1g0351301 RchiOBHm_Chr2g0173081 RchiOBHm_Chr7g0219921 RchiOBHm_Chr7g0228061 RchiOBHm_Chr7g0228091
rosa_laevigata	RLG00000022156
rosa_multiflora	Rmu_sc0011236.1_g000008 Rmu_sc0031614.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079260
rosa_rugosa	Rorug02G0565000
rosa_samantha	Rh2AG644900 Rh2BG655700 Rh2CG620800 Rh2DG669000 Rh7DG395300
rosa_wichuraiana	Rw2G052970 Rw7G033220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	85
Acc65I	GGTACC	1 cut(s)	300
AccB1I	GGYRCC	1 cut(s)	300
AccII	CGCG	1 cut(s)	238
AciI	CCGC	4 cut(s)	25, 39, 241, 335
AcsI	RAATTY	2 cut(s)	103, 133
AcuI	CTGAAG	1 cut(s)	480
AfaI	GTAC	1 cut(s)	302
AfiI	CCNNNNNNNGG	2 cut(s)	193, 310
AgsI	TTSAA	1 cut(s)	374
AhdI	GACNNNNNGTC	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	418
AjuI	GAANNNNNNNTTGG	2 cut(s)	158, 190
AluBI	AGCT	5 cut(s)	48, 81, 320, 458, 464
AluI	AGCT	5 cut(s)	48, 81, 320, 458, 464
AoxI	GGCC	2 cut(s)	115, 511
ApeKI	GCWGC	3 cut(s)	81, 317, 464
ApoI	RAATTY	2 cut(s)	103, 133
Asp718I	GGTACC	1 cut(s)	300
AspLEI	GCGC	4 cut(s)	86, 164, 240, 505
AspS9I	GGNCC	1 cut(s)	116
AsuHPI	GGTGA	2 cut(s)	42, 408
BanI	GGYRCC	1 cut(s)	300
BanII	GRGCYC	1 cut(s)	404
BauI	CACGAG	1 cut(s)	527
BbvI	GCAGC	3 cut(s)	68, 329, 451
BccI	CCATC	3 cut(s)	203, 349, 525
BciT130I	CCWGG	1 cut(s)	420
BciVI	GTATCC	1 cut(s)	28
BfaI	CTAG	1 cut(s)	78
BfoI	RGCGCY	1 cut(s)	165
BfuI	GTATCC	1 cut(s)	28
BisI	GCNGC	4 cut(s)	82, 241, 318, 465
BlsI	GCNGC	4 cut(s)	83, 242, 319, 466
Bme1390I	CCNGG	1 cut(s)	420
BmeRI	GACNNNNNGTC	1 cut(s)	445
BmgT120I	GGNCC	1 cut(s)	116
BmiI	GGNNCC	3 cut(s)	118, 302, 339
BmrFI	CCNGG	1 cut(s)	420
BmrI	ACTGGG	1 cut(s)	306
BmsI	GCATC	1 cut(s)	343
BmuI	ACTGGG	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	229
BsaXI	ACNNNNNCTCC	2 cut(s)	198, 228
Bsc4I	CCNNNNNNNGG	2 cut(s)	193, 310
Bse118I	RCCGGY	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	301
BseBI	CCWGG	1 cut(s)	420
BseDI	CCNNGG	1 cut(s)	229
BseGI	GGATG	2 cut(s)	219, 358
BseLI	CCNNNNNNNGG	2 cut(s)	193, 310
BseNI	ACTGG	1 cut(s)	301
BseXI	GCAGC	3 cut(s)	68, 329, 451
BsgI	GTGCAG	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	238
Bsh1285I	CGRYCG	1 cut(s)	60
BshFI	GGCC	2 cut(s)	117, 513
BshNI	GGYRCC	1 cut(s)	300
BsiEI	CGRYCG	1 cut(s)	60
BsiSI	CCGG	1 cut(s)	53
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	2 cut(s)	193, 310
BsmFI	GGGAC	1 cut(s)	433
BsmI	GAATGC	2 cut(s)	356, 475
BsnI	GGCC	2 cut(s)	117, 513
Bsp1286I	GDGCHC	1 cut(s)	404
Bsp19I	CCATGG	1 cut(s)	229
BspACI	CCGC	4 cut(s)	25, 39, 241, 335
BspANI	GGCC	2 cut(s)	117, 513
BspFNI	CGCG	1 cut(s)	238
BspLI	GGNNCC	3 cut(s)	118, 302, 339
BspT107I	GGYRCC	1 cut(s)	300
BsrFI	RCCGGY	1 cut(s)	52
BsrI	ACTGG	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	52
BssECI	CCNNGG	1 cut(s)	229
BssSI	CACGAG	1 cut(s)	527
BssT1I	CCWWGG	1 cut(s)	229
Bst2BI	CACGAG	1 cut(s)	527
Bst2UI	CCWGG	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	73
BstDSI	CCRYGG	1 cut(s)	229
BstF5I	GGATG	2 cut(s)	219, 358
BstFNI	CGCG	1 cut(s)	238
BstH2I	RGCGCY	1 cut(s)	165
BstHHI	GCGC	4 cut(s)	86, 164, 240, 505
BstMCI	CGRYCG	1 cut(s)	60
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 159, 464
BstNI	CCWGG	1 cut(s)	420
BstNSI	RCATGY	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	418
BstUI	CGCG	1 cut(s)	238
BstV1I	GCAGC	3 cut(s)	68, 329, 451
BsuI	GTATCC	1 cut(s)	28
BsuRI	GGCC	2 cut(s)	117, 513
BtgI	CCRYGG	1 cut(s)	229
BtsCI	GGATG	2 cut(s)	219, 358
Cac8I	GCNNGC	1 cut(s)	73
CfoI	GCGC	4 cut(s)	86, 164, 240, 505
Cfr10I	RCCGGY	1 cut(s)	52
Cfr13I	GGNCC	1 cut(s)	116
CsiI	ACCWGGT	1 cut(s)	418
Csp6I	GTAC	1 cut(s)	301
CviAII	CATG	4 cut(s)	230, 259, 280, 366
CviJI	RGCY	9 cut(s)	48, 75, 81, 117, 320, 402, 458, 464, 513
CviKI_1	RGCY	9 cut(s)	48, 75, 81, 117, 320, 402, 458, 464, 513
CviQI	GTAC	1 cut(s)	301
DriI	GACNNNNNGTC	1 cut(s)	445
Eam1105I	GACNNNNNGTC	1 cut(s)	445
EciI	GGCGGA	1 cut(s)	350
Eco130I	CCWWGG	1 cut(s)	229
Eco24I	GRGCYC	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	480
EcoO109I	RGGNCCY	1 cut(s)	116
EcoRII	CCWGG	1 cut(s)	418
EcoT14I	CCWWGG	1 cut(s)	229
EcoT22I	ATGCAT	1 cut(s)	358
EcoT38I	GRGCYC	1 cut(s)	404
ErhI	CCWWGG	1 cut(s)	229
FaeI	CATG	4 cut(s)	233, 262, 283, 369
FaiI	YATR	9 cut(s)	231, 260, 281, 324, 326, 367, 492, 494, 535
FaqI	GGGAC	1 cut(s)	433
FatI	CATG	4 cut(s)	229, 258, 279, 365
FauI	CCCGC	1 cut(s)	32
FauNDI	CATATG	1 cut(s)	324
Fnu4HI	GCNGC	4 cut(s)	82, 241, 318, 465
FokI	GGATG	2 cut(s)	206, 365
FriOI	GRGCYC	1 cut(s)	404
Fsp4HI	GCNGC	4 cut(s)	82, 241, 318, 465
FspBI	CTAG	1 cut(s)	78
FspI	TGCGCA	1 cut(s)	85
GlaI	GCGC	4 cut(s)	85, 163, 239, 504
GluI	GCNGC	4 cut(s)	82, 241, 318, 465
HaeII	RGCGCY	1 cut(s)	165
HaeIII	GGCC	2 cut(s)	117, 513
HapII	CCGG	1 cut(s)	53
HhaI	GCGC	4 cut(s)	86, 164, 240, 505
Hin1II	CATG	4 cut(s)	233, 262, 283, 369
Hin6I	GCGC	4 cut(s)	84, 162, 238, 503
HinP1I	GCGC	4 cut(s)	84, 162, 238, 503
HinfI	GANTC	2 cut(s)	248, 385
HpaII	CCGG	1 cut(s)	53
HphI	GGTGA	2 cut(s)	42, 408
Hpy188I	TCNGA	2 cut(s)	68, 179
Hpy188III	TCNNGA	4 cut(s)	100, 123, 274, 350
HpyAV	CCTTC	1 cut(s)	138
HpyCH4V	TGCA	4 cut(s)	109, 153, 356, 467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 159, 464
Hsp92II	CATG	4 cut(s)	233, 262, 283, 369
HspAI	GCGC	4 cut(s)	84, 162, 238, 503
KpnI	GGTACC	1 cut(s)	304
LmnI	GCTCC	2 cut(s)	68, 472
LpnPI	CCDG	7 cut(s)	66, 139, 282, 405, 432, 464, 465
Lsp1109I	GCAGC	3 cut(s)	68, 329, 451
LweI	GCATC	1 cut(s)	343
MabI	ACCWGGT	1 cut(s)	418
MaeI	CTAG	1 cut(s)	78
MaeIII	GTNAC	2 cut(s)	200, 496
MfeI	CAATTG	1 cut(s)	306
MhlI	GDGCHC	1 cut(s)	404
MluCI	AATT	5 cut(s)	32, 103, 133, 306, 345
MnlI	CCTC	9 cut(s)	101, 107, 130, 198, 233, 307, 422, 516, 524
Mph1103I	ATGCAT	1 cut(s)	358
MslI	CAYNNNNRTG	1 cut(s)	480
MspA1I	CMGCKG	1 cut(s)	458
MspI	CCGG	1 cut(s)	53
MspR9I	CCNGG	1 cut(s)	420
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	2 cut(s)	356, 475
MvaI	CCWGG	1 cut(s)	420
MvnI	CGCG	1 cut(s)	238
MwoI	GCNNNNNNNGC	3 cut(s)	81, 159, 464
NcoI	CCATGG	1 cut(s)	229
NdeI	CATATG	1 cut(s)	324
NlaIII	CATG	4 cut(s)	233, 262, 283, 369
NlaIV	GGNNCC	3 cut(s)	118, 302, 339
NmuCI	GTSAC	1 cut(s)	200
NsbI	TGCGCA	1 cut(s)	85
NsiI	ATGCAT	1 cut(s)	358
NspI	RCATGY	1 cut(s)	283
PctI	GAATGC	2 cut(s)	356, 475
PfeI	GAWTC	2 cut(s)	248, 385
PkrI	GCNGC	4 cut(s)	83, 242, 319, 466
Psp6I	CCWGG	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	418
PspN4I	GGNNCC	3 cut(s)	118, 302, 339
PspPI	GGNCC	1 cut(s)	116
PvuII	CAGCTG	1 cut(s)	458
RsaI	GTAC	1 cut(s)	302
RsaNI	GTAC	1 cut(s)	301
RseI	CAYNNNNRTG	1 cut(s)	480
SatI	GCNGC	4 cut(s)	82, 241, 318, 465
Sau96I	GGNCC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	420
SduI	GDGCHC	1 cut(s)	404
SetI	ASST	8 cut(s)	14, 50, 83, 149, 322, 421, 460, 466
SexAI	ACCWGGT	1 cut(s)	418
SfaNI	GCATC	1 cut(s)	343
SgrAI	CRCCGGYG	1 cut(s)	52
SmiMI	CAYNNNNRTG	1 cut(s)	480
SmlI	CTYRAG	1 cut(s)	121
SmoI	CTYRAG	1 cut(s)	121
Sse9I	AATT	5 cut(s)	32, 103, 133, 306, 345
SsiI	CCGC	4 cut(s)	25, 39, 241, 335
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	418
StyI	CCWWGG	1 cut(s)	229
TaqI	TCGA	2 cut(s)	101, 225
TaqII	GACCGA	1 cut(s)	74
TasI	AATT	5 cut(s)	32, 103, 133, 306, 345
TauI	GCSGC	1 cut(s)	243
TfiI	GAWTC	2 cut(s)	248, 385
TseFI	GTSAC	1 cut(s)	200
TseI	GCWGC	3 cut(s)	81, 317, 464
Tsp45I	GTSAC	1 cut(s)	200
TspDTI	ATGAA	1 cut(s)	354
TspGWI	ACGGA	2 cut(s)	219, 435
XapI	RAATTY	2 cut(s)	103, 133
XceI	RCATGY	1 cut(s)	283
XspI	CTAG	1 cut(s)	78
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.