Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003862

Physical Location & Seq

Genomic Coordinates Reverse (-)

44596874 .. 44598532

Gene Structure 1659 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ57709

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGTCTATTGGGTCGTTGTTCAGCTCCCCTCAATTTACTGTTAAAATCTCCCCGGTAACCGACAGCAGACCAAACCCTAACCCGAGCCTCAACTTCTCGAATTTGCAGAGAGGCCCCTCCAGAACTAGAGTTTTAAGCATCGGGACCCGGAATGGAGGATTAGGACAAACTAATCCCCATGGAGTTAGCGACAGAGACAGCGTCGTCATCGTCGACCATGGCTCGCGCCATGAGTTTGTGGACATGTTTAGGGAGAGAACTGGGTATGCTATAGTGGAGCCTGCTCATATGGAGTTGGCAGAACCTTCAATTCAAGACGCATTCAATTCGTGTGTTGAACAAGGTGCCAATCGTGTTATTGTGATCCCCTTTTTCCTCTTACCAGGAAGACATTGGAAGCAGCATCCTGGTCTGTCATATATGGTGACCGCGCCGCTTGGTCTCCACCCGCTACTTGTGGATGTTATGAATGACAGAATCAATCACTGCTTGAGCCATGTTGCTGGAGATGCAATTGAGTGTGTTGTTTGTGTTGGAACAGGCAAATACCAGCTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0018130 GO:0019354 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046156 GO:0046483 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0051266 GO:0051536 GO:0051540 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

CbiX

Protein Analysis

186

Amino Acids

20.39

Weight (kDa)

6.78

Isoelectric Point (pI)

38.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CbiX	PF01903	77 - 157	7.7e-18	CbiX

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50170 AT1G50170 AT1G50170
fragaria_vesca	FvH4_3g28470 FvH4_3g28470 FvH4_6g51400
malus_domestica	MD09G1028700.v1.1 MD17G1030300.v1.1
prunus_persica	Prupe.3G207400_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289700_v2.0.a1
pyrus_communis	pycom111g02280 pycom17g02770
rosa_chinensis	RchiOBHm_Chr1g0351301 RchiOBHm_Chr2g0173081 RchiOBHm_Chr7g0219921 RchiOBHm_Chr7g0228061 RchiOBHm_Chr7g0228091
rosa_laevigata	RLG00000022156
rosa_multiflora	Rmu_sc0011236.1_g000008 Rmu_sc0031614.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079260
rosa_rugosa	Rorug02G0565000
rosa_samantha	Rh2AG644900 Rh2BG655700 Rh2CG620800 Rh2DG669000 Rh7DG395300
rosa_wichuraiana	Rw2G052970 Rw7G033220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	203
AccB1I	GGYRCC	1 cut(s)	344
AccI	GTMKAC	1 cut(s)	213
AccII	CGCG	2 cut(s)	226, 431
AciI	CCGC	3 cut(s)	429, 434, 449
AclWI	GGATC	1 cut(s)	358
AcsI	RAATTY	1 cut(s)	100
AflIII	ACRYGT	1 cut(s)	243
AgsI	TTSAA	4 cut(s)	309, 314, 325, 338
AjnI	CCWGG	2 cut(s)	382, 406
AluBI	AGCT	2 cut(s)	24, 553
AluI	AGCT	2 cut(s)	24, 553
Alw26I	GTCTC	2 cut(s)	189, 446
AlwI	GGATC	1 cut(s)	358
Ama87I	CYCGRG	1 cut(s)	82
AoxI	GGCC	1 cut(s)	112
ApeKI	GCWGC	1 cut(s)	400
ApoI	RAATTY	1 cut(s)	100
AspLEI	GCGC	2 cut(s)	228, 433
AspS9I	GGNCC	2 cut(s)	113, 144
AsuC2I	CCSGG	2 cut(s)	53, 148
AsuHPI	GGTGA	1 cut(s)	436
AvaI	CYCGRG	1 cut(s)	82
AvaII	GGWCC	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	344
BbsI	GAAGAC	1 cut(s)	394
BbvI	GCAGC	1 cut(s)	412
BcgI	CGANNNNNNTGC	2 cut(s)	309, 343
BciT130I	CCWGG	2 cut(s)	384, 408
BcnI	CCSGG	2 cut(s)	53, 148
BcoDI	GTCTC	2 cut(s)	189, 446
BfaI	CTAG	1 cut(s)	126
BfmI	CTRYAG	1 cut(s)	270
BisI	GCNGC	2 cut(s)	401, 434
BlsI	GCNGC	2 cut(s)	402, 435
Bme1390I	CCNGG	4 cut(s)	53, 148, 384, 408
Bme18I	GGWCC	1 cut(s)	144
BmeT110I	CYCGRG	1 cut(s)	82
BmgT120I	GGNCC	2 cut(s)	113, 144
BmiI	GGNNCC	5 cut(s)	115, 145, 146, 279, 346
BmrFI	CCNGG	4 cut(s)	53, 148, 384, 408
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	3 cut(s)	147, 412, 499
BmuI	ACTGGG	1 cut(s)	270
BpiI	GAAGAC	1 cut(s)	394
BpmI	CTGGAG	2 cut(s)	103, 525
BpuEI	CTTGAG	1 cut(s)	511
BpuMI	CCSGG	2 cut(s)	53, 148
BsaI	GGTCTC	1 cut(s)	446
BsaJI	CCNNGG	3 cut(s)	51, 178, 217
Bse1I	ACTGG	1 cut(s)	265
BseBI	CCWGG	2 cut(s)	384, 408
BseDI	CCNNGG	3 cut(s)	51, 178, 217
BseGI	GGATG	2 cut(s)	403, 466
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	1 cut(s)	412
Bsh1236I	CGCG	2 cut(s)	226, 431
BshFI	GGCC	1 cut(s)	114
BshNI	GGYRCC	1 cut(s)	344
BsiHKCI	CYCGRG	1 cut(s)	82
BsiSI	CCGG	2 cut(s)	53, 148
BslFI	GGGAC	1 cut(s)	157
BsmAI	GTCTC	2 cut(s)	189, 446
BsmFI	GGGAC	1 cut(s)	157
BsmI	GAATGC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	114
Bso31I	GGTCTC	1 cut(s)	446
BsoBI	CYCGRG	1 cut(s)	82
Bsp143I	GATC	1 cut(s)	363
Bsp19I	CCATGG	2 cut(s)	178, 217
BspACI	CCGC	3 cut(s)	429, 434, 449
BspANI	GGCC	1 cut(s)	114
BspFNI	CGCG	2 cut(s)	226, 431
BspLI	GGNNCC	5 cut(s)	115, 145, 146, 279, 346
BspPI	GGATC	1 cut(s)	358
BspT107I	GGYRCC	1 cut(s)	344
BspTNI	GGTCTC	1 cut(s)	446
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	3 cut(s)	51, 178, 217
BssMI	GATC	1 cut(s)	363
BssT1I	CCWWGG	2 cut(s)	178, 217
Bst2UI	CCWGG	2 cut(s)	384, 408
Bst4CI	ACNGT	1 cut(s)	40
BstC8I	GCNNGC	2 cut(s)	224, 282
BstDSI	CCRYGG	2 cut(s)	178, 217
BstEII	GGTNACC	2 cut(s)	55, 424
BstF5I	GGATG	2 cut(s)	403, 466
BstFNI	CGCG	2 cut(s)	226, 431
BstHHI	GCGC	2 cut(s)	228, 433
BstKTI	GATC	1 cut(s)	366
BstMAI	GTCTC	2 cut(s)	189, 446
BstMBI	GATC	1 cut(s)	363
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNI	CCWGG	2 cut(s)	384, 408
BstNSI	RCATGY	1 cut(s)	247
BstPI	GGTNACC	2 cut(s)	55, 424
BstSCI	CCNGG	4 cut(s)	51, 146, 382, 406
BstSFI	CTRYAG	1 cut(s)	270
BstUI	CGCG	2 cut(s)	226, 431
BstV1I	GCAGC	1 cut(s)	412
BstV2I	GAAGAC	1 cut(s)	394
BstXI	CCANNNNNNTGG	1 cut(s)	503
BsuRI	GGCC	1 cut(s)	114
BtgI	CCRYGG	2 cut(s)	178, 217
BtsCI	GGATG	2 cut(s)	403, 466
BtsI	GCAGTG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	2 cut(s)	224, 282
CfoI	GCGC	2 cut(s)	228, 433
Cfr13I	GGNCC	2 cut(s)	113, 144
CseI	GACGC	2 cut(s)	190, 326
CviAII	CATG	5 cut(s)	179, 218, 230, 244, 497
CviJI	RGCY	7 cut(s)	24, 87, 114, 222, 280, 495, 553
CviKI_1	RGCY	7 cut(s)	24, 87, 114, 222, 280, 495, 553
DpnI	GATC	1 cut(s)	365
DpnII	GATC	1 cut(s)	363
DrdI	GACNNNNNNGTC	1 cut(s)	203
DseDI	GACNNNNNNGTC	1 cut(s)	203
Eco130I	CCWWGG	2 cut(s)	178, 217
Eco31I	GGTCTC	1 cut(s)	446
Eco47I	GGWCC	1 cut(s)	144
Eco88I	CYCGRG	1 cut(s)	82
Eco91I	GGTNACC	2 cut(s)	55, 424
EcoO109I	RGGNCCY	2 cut(s)	113, 144
EcoO65I	GGTNACC	2 cut(s)	55, 424
EcoRII	CCWGG	2 cut(s)	382, 406
EcoT14I	CCWWGG	2 cut(s)	178, 217
ErhI	CCWWGG	2 cut(s)	178, 217
FaeI	CATG	5 cut(s)	182, 221, 233, 247, 500
FaqI	GGGAC	1 cut(s)	157
FatI	CATG	5 cut(s)	178, 217, 229, 243, 496
FauI	CCCGC	1 cut(s)	456
FauNDI	CATATG	1 cut(s)	288
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	2 cut(s)	401, 434
FokI	GGATG	2 cut(s)	390, 473
Fsp4HI	GCNGC	2 cut(s)	401, 434
FspBI	CTAG	1 cut(s)	126
GlaI	GCGC	2 cut(s)	227, 432
GluI	GCNGC	2 cut(s)	401, 434
GsuI	CTGGAG	2 cut(s)	103, 525
HaeIII	GGCC	1 cut(s)	114
HapII	CCGG	2 cut(s)	53, 148
HgaI	GACGC	2 cut(s)	190, 326
HhaI	GCGC	2 cut(s)	228, 433
Hin1II	CATG	5 cut(s)	182, 221, 233, 247, 500
Hin6I	GCGC	2 cut(s)	226, 431
HinP1I	GCGC	2 cut(s)	226, 431
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	1 cut(s)	477
HpaII	CCGG	2 cut(s)	53, 148
HphI	GGTGA	1 cut(s)	436
Hpy166II	GTNNAC	2 cut(s)	214, 241
Hpy188III	TCNNGA	4 cut(s)	97, 120, 142, 314
Hpy8I	GTNNAC	2 cut(s)	214, 241
Hpy99I	CGWCG	2 cut(s)	206, 215
HpyAV	CCTTC	1 cut(s)	315
HpyCH4III	ACNGT	1 cut(s)	40
HpyCH4V	TGCA	2 cut(s)	106, 512
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
Hsp92II	CATG	5 cut(s)	182, 221, 233, 247, 500
HspAI	GCGC	2 cut(s)	226, 431
KflI	GGGWCCC	1 cut(s)	144
Kzo9I	GATC	1 cut(s)	363
LmnI	GCTCC	3 cut(s)	29, 277, 558
Lsp1109I	GCAGC	1 cut(s)	412
LweI	GCATC	3 cut(s)	147, 412, 499
MaeI	CTAG	1 cut(s)	126
MaeIII	GTNAC	2 cut(s)	55, 424
MalI	GATC	1 cut(s)	365
MboI	GATC	1 cut(s)	363
MboII	GAAGA	1 cut(s)	399
MfeI	CAATTG	1 cut(s)	513
MluCI	AATT	5 cut(s)	32, 100, 309, 325, 513
MmeI	TCCRAC	1 cut(s)	514
MnlI	CCTC	6 cut(s)	39, 98, 104, 127, 149, 386
MseI	TTAA	2 cut(s)	42, 134
MspI	CCGG	2 cut(s)	53, 148
MspR9I	CCNGG	4 cut(s)	53, 148, 384, 408
MunI	CAATTG	1 cut(s)	513
Mva1269I	GAATGC	1 cut(s)	320
MvaI	CCWGG	2 cut(s)	384, 408
MvnI	CGCG	2 cut(s)	226, 431
MwoI	GCNNNNNNNGC	1 cut(s)	509
NciI	CCSGG	2 cut(s)	53, 148
NcoI	CCATGG	2 cut(s)	178, 217
NdeI	CATATG	1 cut(s)	288
NdeII	GATC	1 cut(s)	363
NlaIII	CATG	5 cut(s)	182, 221, 233, 247, 500
NlaIV	GGNNCC	5 cut(s)	115, 145, 146, 279, 346
NmuCI	GTSAC	1 cut(s)	424
NspI	RCATGY	1 cut(s)	247
PciI	ACATGT	1 cut(s)	243
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PctI	GAATGC	1 cut(s)	320
PfeI	GAWTC	1 cut(s)	477
PflFI	GACNNNGTC	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	402, 435
PpuMI	RGGWCCY	1 cut(s)	144
PscI	ACATGT	1 cut(s)	243
Psp5II	RGGWCCY	1 cut(s)	144
Psp6I	CCWGG	2 cut(s)	382, 406
PspEI	GGTNACC	2 cut(s)	55, 424
PspGI	CCWGG	2 cut(s)	382, 406
PspN4I	GGNNCC	5 cut(s)	115, 145, 146, 279, 346
PspPI	GGNCC	2 cut(s)	113, 144
PspPPI	RGGWCCY	1 cut(s)	144
PsyI	GACNNNGTC	1 cut(s)	200
SalI	GTCGAC	1 cut(s)	212
SaqAI	TTAA	2 cut(s)	42, 134
SatI	GCNGC	2 cut(s)	401, 434
Sau3AI	GATC	1 cut(s)	363
Sau96I	GGNCC	2 cut(s)	113, 144
ScrFI	CCNGG	4 cut(s)	53, 148, 384, 408
SetI	ASST	4 cut(s)	26, 307, 346, 555
SfaNI	GCATC	3 cut(s)	147, 412, 499
SfcI	CTRYAG	1 cut(s)	270
SinI	GGWCC	1 cut(s)	144
SmlI	CTYRAG	1 cut(s)	490
SmoI	CTYRAG	1 cut(s)	490
Sse9I	AATT	5 cut(s)	32, 100, 309, 325, 513
SsiI	CCGC	3 cut(s)	429, 434, 449
SspMI	CTAG	1 cut(s)	126
StyD4I	CCNGG	4 cut(s)	51, 146, 382, 406
StyI	CCWWGG	2 cut(s)	178, 217
TaaI	ACNGT	1 cut(s)	40
TaqI	TCGA	2 cut(s)	98, 213
TasI	AATT	5 cut(s)	32, 100, 309, 325, 513
TauI	GCSGC	1 cut(s)	436
TfiI	GAWTC	1 cut(s)	477
Tru1I	TTAA	2 cut(s)	42, 134
Tru9I	TTAA	2 cut(s)	42, 134
TscAI	CASTG	1 cut(s)	491
TseFI	GTSAC	1 cut(s)	424
TseI	GCWGC	1 cut(s)	400
Tsp45I	GTSAC	1 cut(s)	424
TspDTI	ATGAA	1 cut(s)	482
TspRI	CASTG	1 cut(s)	491
Tth111I	GACNNNGTC	1 cut(s)	200
VpaK11BI	GGWCC	1 cut(s)	144
XapI	RAATTY	1 cut(s)	100
XceI	RCATGY	1 cut(s)	247
XcmI	CCANNNNNNNNNTGG	1 cut(s)	390
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	1 cut(s)	126

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.