Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003862

Physical Location & Seq

Genomic Coordinates Forward (+)

38647918 .. 38652647

Gene Structure 4730 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19684

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGTTCATGGACTTTGGCTAATGCTAAGCATCAGACCTCAAGTGATTCTATGCAACGGGCCTGGGACTTGTGTTCCACTTTGTGTAATTGCATTCTTATTTAAGGTTGTGGGGATTAGATGGTCATCTGTGTTTTATGTGGAGAGTATAGCAAGAGTACAGAGGCTTTCCCTAAGTGGCTTGCTTCTTTACAAGTTATGCATAGCTGATCAGTTCTTTGTGCCACTACTAGAAATATGGCCTATAGCCACAGCCCCAATAGGGACGAGCACCCATCTGTGGCTAATGAAAAACCTTTTAATTAGCTGTCAGTGTTCTATACTCGTCTACTCTACTCATCTTCATCGCTCAGTCTCAGACTCTCTATACGACTGCCCCTCCAGAACTAGAGTTTTAAGCATCGGGACCGGGAATGGAGGATTGGGACAAACTAATCCCCATGGAGTTGGCAACAGAGACGGCGGCGTCATCATCGACCATGGCTCGCGCCGTAAGGAATCAAACCTCATGCTGAATGAGTTTGTGGACATGTTTAGGGAGAGAACTGGGTATGCTATAGAGTTGGCAGACCCTTCAATTCAAGACGTGTTCAATTCGTGTGTTGAACAAGGTGCCAATCGTGTTATTGTGAGCCCCTTTTTCCTCTTACCAGGAAGACATTGGAAGCAGGACATACCATCTCTAACAGCTGAAGCTGCAAAGGAGCATCCTGGTGTGTCATATATGGTGACCGCGCCTCTAGGTCTCCACCCGCTACTTGTGGATGTTATGAATGACAGAATCAATCACTGCTTGAGCCATGTTGCTGGAGATGCAAGTGAGTGTGCTGTTTGTGTTGGAACAGGCAAATGGCAGCTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0018130 GO:0019354 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046156 GO:0046483 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0051266 GO:0051536 GO:0051540 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

CbiX

Protein Analysis

287

Amino Acids

31.59

Weight (kDa)

7.16

Isoelectric Point (pI)

34.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Alg14	PF08660	2 - 74	3.8e-25	Oligosaccharide biosynthesis protein Alg14 like
CbiX	PF01903	160 - 258	2.9e-26	CbiX

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50170 AT1G50170 AT1G50170
fragaria_vesca	FvH4_3g28470 FvH4_3g28470 FvH4_6g51400
malus_domestica	MD09G1028700.v1.1 MD17G1030300.v1.1
prunus_persica	Prupe.3G207400_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289700_v2.0.a1
pyrus_communis	pycom111g02280 pycom17g02770
rosa_chinensis	RchiOBHm_Chr1g0351301 RchiOBHm_Chr2g0173081 RchiOBHm_Chr7g0219921 RchiOBHm_Chr7g0228061 RchiOBHm_Chr7g0228091
rosa_laevigata	RLG00000022156
rosa_multiflora	Rmu_sc0011236.1_g000008 Rmu_sc0031614.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079260
rosa_rugosa	Rorug02G0565000
rosa_samantha	Rh2AG644900 Rh2BG655700 Rh2CG620800 Rh2DG669000 Rh7DG395300
rosa_wichuraiana	Rw2G052970 Rw7G033220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	464
AccB1I	GGYRCC	1 cut(s)	611
AccI	GTMKAC	1 cut(s)	327
AccII	CGCG	2 cut(s)	487, 734
AciI	CCGC	3 cut(s)	462, 732, 752
AcuI	CTGAAG	1 cut(s)	711
AcyI	GRCGYC	1 cut(s)	465
AdeI	CACNNNGTG	1 cut(s)	83
AfaI	GTAC	1 cut(s)	159
AfiI	CCNNNNNNNGG	2 cut(s)	261, 279
AflIII	ACRYGT	2 cut(s)	528, 585
AgsI	TTSAA	4 cut(s)	576, 581, 592, 605
AjiI	CACGTC	1 cut(s)	586
AjnI	CCWGG	3 cut(s)	61, 649, 709
AjuI	GAANNNNNNNTTGG	2 cut(s)	404, 436
AluBI	AGCT	5 cut(s)	206, 306, 689, 695, 856
AluI	AGCT	5 cut(s)	206, 306, 689, 695, 856
Alw21I	GWGCWC	1 cut(s)	272
Alw26I	GTCTC	3 cut(s)	358, 450, 749
AoxI	GGCC	2 cut(s)	59, 239
ApeKI	GCWGC	2 cut(s)	695, 853
AspLEI	GCGC	2 cut(s)	489, 736
AspS9I	GGNCC	2 cut(s)	59, 405
AsuC2I	CCSGG	1 cut(s)	409
AsuHPI	GGTGA	1 cut(s)	739
AvaII	GGWCC	1 cut(s)	405
BanI	GGYRCC	1 cut(s)	611
BanII	GRGCYC	1 cut(s)	635
BbsI	GAAGAC	1 cut(s)	661
Bbv12I	GWGCWC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	682
BccI	CCATC	3 cut(s)	114, 282, 685
BceAI	ACGGC	2 cut(s)	474, 475
BciT130I	CCWGG	3 cut(s)	63, 651, 711
BclI	TGATCA	1 cut(s)	208
BcnI	CCSGG	1 cut(s)	409
BcoDI	GTCTC	3 cut(s)	358, 450, 749
BfaI	CTAG	3 cut(s)	230, 387, 740
BfmI	CTRYAG	2 cut(s)	243, 555
BisI	GCNGC	3 cut(s)	463, 696, 854
BlpI	GCTNAGC	1 cut(s)	26
BlsI	GCNGC	3 cut(s)	464, 697, 855
Bme1390I	CCNGG	4 cut(s)	63, 409, 651, 711
Bme18I	GGWCC	1 cut(s)	405
BmgBI	CACGTC	1 cut(s)	586
BmgT120I	GGNCC	2 cut(s)	59, 405
BmiI	GGNNCC	2 cut(s)	406, 613
BmrFI	CCNGG	4 cut(s)	63, 409, 651, 711
BmrI	ACTGGG	1 cut(s)	555
BmsI	GCATC	4 cut(s)	39, 408, 715, 802
BmuI	ACTGGG	1 cut(s)	555
BpiI	GAAGAC	1 cut(s)	661
BpmI	CTGGAG	2 cut(s)	364, 828
Bpu1102I	GCTNAGC	1 cut(s)	26
BpuEI	CTTGAG	2 cut(s)	24, 814
BpuMI	CCSGG	1 cut(s)	409
BsaBI	GATNNNNATC	1 cut(s)	124
BsaHI	GRCGYC	1 cut(s)	465
BsaI	GGTCTC	1 cut(s)	749
BsaJI	CCNNGG	3 cut(s)	62, 439, 478
BsaXI	ACNNNNNCTCC	2 cut(s)	362, 392
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 279
Bse1I	ACTGG	1 cut(s)	550
Bse8I	GATNNNNATC	1 cut(s)	124
BseBI	CCWGG	3 cut(s)	63, 651, 711
BseDI	CCNNGG	3 cut(s)	62, 439, 478
BseGI	GGATG	2 cut(s)	706, 769
BseJI	GATNNNNATC	1 cut(s)	124
BseLI	CCNNNNNNNGG	2 cut(s)	261, 279
BseMII	CTCAG	2 cut(s)	363, 369
BseNI	ACTGG	1 cut(s)	550
BseXI	GCAGC	1 cut(s)	682
Bsh1236I	CGCG	2 cut(s)	487, 734
BshFI	GGCC	2 cut(s)	61, 241
BshNI	GGYRCC	1 cut(s)	611
BsiHKAI	GWGCWC	1 cut(s)	272
BsiSI	CCGG	1 cut(s)	408
BslFI	GGGAC	4 cut(s)	79, 277, 418, 438
BslI	CCNNNNNNNGG	2 cut(s)	261, 279
BsmAI	GTCTC	3 cut(s)	358, 450, 749
BsmBI	CGTCTC	1 cut(s)	450
BsmFI	GGGAC	4 cut(s)	79, 277, 418, 438
BsmI	GAATGC	1 cut(s)	92
BsnI	GGCC	2 cut(s)	61, 241
Bso31I	GGTCTC	1 cut(s)	749
Bsp1286I	GDGCHC	2 cut(s)	272, 635
Bsp143I	GATC	1 cut(s)	208
Bsp1720I	GCTNAGC	1 cut(s)	26
Bsp19I	CCATGG	2 cut(s)	439, 478
BspACI	CCGC	3 cut(s)	462, 732, 752
BspANI	GGCC	2 cut(s)	61, 241
BspCNI	CTCAG	2 cut(s)	362, 368
BspFNI	CGCG	2 cut(s)	487, 734
BspLI	GGNNCC	2 cut(s)	406, 613
BspT107I	GGYRCC	1 cut(s)	611
BspTNI	GGTCTC	1 cut(s)	749
BsrI	ACTGG	1 cut(s)	550
BssECI	CCNNGG	3 cut(s)	62, 439, 478
BssMI	GATC	1 cut(s)	208
BssNI	GRCGYC	1 cut(s)	465
BssT1I	CCWWGG	2 cut(s)	439, 478
Bst2UI	CCWGG	3 cut(s)	63, 651, 711
BstACI	GRCGYC	1 cut(s)	465
BstC8I	GCNNGC	2 cut(s)	182, 485
BstDEI	CTNAG	4 cut(s)	26, 173, 349, 355
BstDSI	CCRYGG	2 cut(s)	439, 478
BstEII	GGTNACC	1 cut(s)	727
BstF5I	GGATG	2 cut(s)	706, 769
BstFNI	CGCG	2 cut(s)	487, 734
BstHHI	GCGC	2 cut(s)	489, 736
BstKTI	GATC	1 cut(s)	211
BstMAI	GTCTC	3 cut(s)	358, 450, 749
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	2 cut(s)	695, 812
BstNI	CCWGG	3 cut(s)	63, 651, 711
BstNSI	RCATGY	1 cut(s)	532
BstPI	GGTNACC	1 cut(s)	727
BstSCI	CCNGG	4 cut(s)	61, 407, 649, 709
BstSFI	CTRYAG	2 cut(s)	243, 555
BstUI	CGCG	2 cut(s)	487, 734
BstV1I	GCAGC	1 cut(s)	682
BstV2I	GAAGAC	1 cut(s)	661
BstXI	CCANNNNNNTGG	2 cut(s)	446, 806
BsuRI	GGCC	2 cut(s)	61, 241
BtgI	CCRYGG	2 cut(s)	439, 478
BtgZI	GCGATG	1 cut(s)	329
BtrI	CACGTC	1 cut(s)	586
BtsCI	GGATG	2 cut(s)	706, 769
BtsI	GCAGTG	1 cut(s)	787
BtsIMutI	CAGTG	2 cut(s)	317, 787
Cac8I	GCNNGC	2 cut(s)	182, 485
CfoI	GCGC	2 cut(s)	489, 736
Cfr13I	GGNCC	2 cut(s)	59, 405
CseI	GACGC	1 cut(s)	454
Csp6I	GTAC	1 cut(s)	158
CviAII	CATG	6 cut(s)	8, 440, 479, 508, 529, 800
CviQI	GTAC	1 cut(s)	158
DdeI	CTNAG	4 cut(s)	26, 173, 349, 355
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
DraIII	CACNNNGTG	1 cut(s)	83
DrdI	GACNNNNNNGTC	1 cut(s)	464
DseDI	GACNNNNNNGTC	1 cut(s)	464
Eco130I	CCWWGG	2 cut(s)	439, 478
Eco24I	GRGCYC	1 cut(s)	635
Eco31I	GGTCTC	1 cut(s)	749
Eco47I	GGWCC	1 cut(s)	405
Eco57I	CTGAAG	1 cut(s)	711
Eco91I	GGTNACC	1 cut(s)	727
EcoO65I	GGTNACC	1 cut(s)	727
EcoRII	CCWGG	3 cut(s)	61, 649, 709
EcoT14I	CCWWGG	2 cut(s)	439, 478
EcoT22I	ATGCAT	1 cut(s)	203
EcoT38I	GRGCYC	1 cut(s)	635
ErhI	CCWWGG	2 cut(s)	439, 478
Esp3I	CGTCTC	1 cut(s)	450
FaeI	CATG	6 cut(s)	11, 443, 482, 511, 532, 803
FaqI	GGGAC	4 cut(s)	79, 277, 418, 438
FatI	CATG	6 cut(s)	7, 439, 478, 507, 528, 799
FauI	CCCGC	1 cut(s)	759
FbaI	TGATCA	1 cut(s)	208
FblI	GTMKAC	1 cut(s)	327
Fnu4HI	GCNGC	3 cut(s)	463, 696, 854
FokI	GGATG	2 cut(s)	693, 776
FriOI	GRGCYC	1 cut(s)	635
Fsp4HI	GCNGC	3 cut(s)	463, 696, 854
FspBI	CTAG	3 cut(s)	230, 387, 740
GlaI	GCGC	2 cut(s)	488, 735
GluI	GCNGC	3 cut(s)	463, 696, 854
GsuI	CTGGAG	2 cut(s)	364, 828
HaeIII	GGCC	2 cut(s)	61, 241
HapII	CCGG	1 cut(s)	408
HgaI	GACGC	1 cut(s)	454
HhaI	GCGC	2 cut(s)	489, 736
Hin1I	GRCGYC	1 cut(s)	465
Hin1II	CATG	6 cut(s)	11, 443, 482, 511, 532, 803
Hin6I	GCGC	2 cut(s)	487, 734
HinP1I	GCGC	2 cut(s)	487, 734
HinfI	GANTC	4 cut(s)	46, 359, 497, 780
HpaII	CCGG	1 cut(s)	408
HphI	GGTGA	1 cut(s)	739
Hpy166II	GTNNAC	2 cut(s)	328, 526
Hpy188I	TCNGA	2 cut(s)	35, 358
Hpy188III	TCNNGA	3 cut(s)	381, 403, 581
Hpy8I	GTNNAC	2 cut(s)	328, 526
HpyAV	CCTTC	1 cut(s)	582
HpyCH4IV	ACGT	1 cut(s)	585
HpyCH4V	TGCA	5 cut(s)	54, 92, 201, 698, 815
HpyF10VI	GCNNNNNNNGC	2 cut(s)	695, 812
HpyF3I	CTNAG	4 cut(s)	26, 173, 349, 355
HpySE526I	ACGT	1 cut(s)	585
Hsp92I	GRCGYC	1 cut(s)	465
Hsp92II	CATG	6 cut(s)	11, 443, 482, 511, 532, 803
HspAI	GCGC	2 cut(s)	487, 734
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	208
LmnI	GCTCC	2 cut(s)	703, 861
Lsp1109I	GCAGC	1 cut(s)	682
LweI	GCATC	4 cut(s)	39, 408, 715, 802
MaeI	CTAG	3 cut(s)	230, 387, 740
MaeII	ACGT	1 cut(s)	585
MaeIII	GTNAC	1 cut(s)	727
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	2 cut(s)	332, 666
MhlI	GDGCHC	2 cut(s)	272, 635
MluCI	AATT	4 cut(s)	87, 300, 576, 592
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	817
MnlI	CCTC	7 cut(s)	48, 156, 388, 410, 515, 653, 747
Mph1103I	ATGCAT	1 cut(s)	203
MseI	TTAA	3 cut(s)	102, 299, 395
MslI	CAYNNNNRTG	1 cut(s)	711
MspA1I	CMGCKG	1 cut(s)	689
MspI	CCGG	1 cut(s)	408
MspR9I	CCNGG	4 cut(s)	63, 409, 651, 711
Mva1269I	GAATGC	1 cut(s)	92
MvaI	CCWGG	3 cut(s)	63, 651, 711
MvnI	CGCG	2 cut(s)	487, 734
MwoI	GCNNNNNNNGC	2 cut(s)	695, 812
NciI	CCSGG	1 cut(s)	409
NcoI	CCATGG	2 cut(s)	439, 478
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	6 cut(s)	11, 443, 482, 511, 532, 803
NlaIV	GGNNCC	2 cut(s)	406, 613
NmuCI	GTSAC	1 cut(s)	727
NsiI	ATGCAT	1 cut(s)	203
NspI	RCATGY	1 cut(s)	532
PciI	ACATGT	1 cut(s)	528
PctI	GAATGC	1 cut(s)	92
PfeI	GAWTC	3 cut(s)	46, 497, 780
PkrI	GCNGC	3 cut(s)	464, 697, 855
PleI	GAGTC	1 cut(s)	353
PpsI	GAGTC	1 cut(s)	353
PscI	ACATGT	1 cut(s)	528
Psp6I	CCWGG	3 cut(s)	61, 649, 709
PspEI	GGTNACC	1 cut(s)	727
PspGI	CCWGG	3 cut(s)	61, 649, 709
PspN4I	GGNNCC	2 cut(s)	406, 613
PspPI	GGNCC	2 cut(s)	59, 405
PvuII	CAGCTG	1 cut(s)	689
RsaI	GTAC	1 cut(s)	159
RsaNI	GTAC	1 cut(s)	158
RseI	CAYNNNNRTG	1 cut(s)	711
SaqAI	TTAA	3 cut(s)	102, 299, 395
SatI	GCNGC	3 cut(s)	463, 696, 854
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	2 cut(s)	59, 405
SchI	GAGTC	1 cut(s)	353
ScrFI	CCNGG	4 cut(s)	63, 409, 651, 711
SduI	GDGCHC	2 cut(s)	272, 635
SfaNI	GCATC	4 cut(s)	39, 408, 715, 802
SfcI	CTRYAG	2 cut(s)	243, 555
SinI	GGWCC	1 cut(s)	405
SmiMI	CAYNNNNRTG	1 cut(s)	711
SmlI	CTYRAG	2 cut(s)	39, 793
SmoI	CTYRAG	2 cut(s)	39, 793
Sse9I	AATT	4 cut(s)	87, 300, 576, 592
SsiI	CCGC	3 cut(s)	462, 732, 752
SspMI	CTAG	3 cut(s)	230, 387, 740
StyD4I	CCNGG	4 cut(s)	61, 407, 649, 709
StyI	CCWWGG	2 cut(s)	439, 478
TaiI	ACGT	1 cut(s)	588
TaqI	TCGA	1 cut(s)	474
TasI	AATT	4 cut(s)	87, 300, 576, 592
TatI	WGTACW	1 cut(s)	157
TauI	GCSGC	1 cut(s)	465
TfiI	GAWTC	3 cut(s)	46, 497, 780
Tru1I	TTAA	3 cut(s)	102, 299, 395
Tru9I	TTAA	3 cut(s)	102, 299, 395
TscAI	CASTG	2 cut(s)	317, 794
TseFI	GTSAC	1 cut(s)	727
TseI	GCWGC	2 cut(s)	695, 853
Tsp45I	GTSAC	1 cut(s)	727
TspDTI	ATGAA	3 cut(s)	302, 332, 785
TspRI	CASTG	2 cut(s)	317, 794
VpaK11BI	GGWCC	1 cut(s)	405
XceI	RCATGY	1 cut(s)	532
XcmI	CCANNNNNNNNNTGG	1 cut(s)	657
XmiI	GTMKAC	1 cut(s)	327
XspI	CTAG	3 cut(s)	230, 387, 740
Zsp2I	ATGCAT	1 cut(s)	203

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.