Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003862

Physical Location & Seq

Genomic Coordinates Reverse (-)

26025309 .. 26025953

Gene Structure 645 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G289700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 258 bp

ATGATCGCCTCCAACTGGACCGTTGAATTTCGATTTTTGATAACTGGAAGACATTGGAACCAGGATATTCCATCCCTGACAGCTGAAGCTGCAAAGGAGCATCCTGGTGTCTCATCTATAGTAACGGCACCTCTTGGCCTCCATCAACTACTCGTGGATGTTTTGAATGATAGGATTAATCACGGCTTTAGCCATATTGCTGGAGATGCAGAGGAGTGCTCTGTTTGTGTTGGAACAAACAAATGCCAGCTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0018130 GO:0019354 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046156 GO:0046483 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0051266 GO:0051536 GO:0051540 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

CbiX

Protein Analysis

86

Amino Acids

9.32

Weight (kDa)

5.76

Isoelectric Point (pI)

21.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50170 AT1G50170 AT1G50170
fragaria_vesca	FvH4_3g28470 FvH4_3g28470 FvH4_6g51400
malus_domestica	MD09G1028700.v1.1 MD17G1030300.v1.1
prunus_persica	Prupe.3G207400_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289700_v2.0.a1
pyrus_communis	pycom111g02280 pycom17g02770
rosa_chinensis	RchiOBHm_Chr1g0351301 RchiOBHm_Chr2g0173081 RchiOBHm_Chr7g0219921 RchiOBHm_Chr7g0228061 RchiOBHm_Chr7g0228091
rosa_laevigata	RLG00000022156
rosa_multiflora	Rmu_sc0011236.1_g000008 Rmu_sc0031614.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079260
rosa_rugosa	Rorug02G0565000
rosa_samantha	Rh2AG644900 Rh2BG655700 Rh2CG620800 Rh2DG669000 Rh7DG395300
rosa_wichuraiana	Rw2G052970 Rw7G033220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	26
AcuI	CTGAAG	1 cut(s)	105
AfiI	CCNNNNNNNGG	1 cut(s)	15
AgsI	TTSAA	2 cut(s)	26, 166
AjnI	CCWGG	2 cut(s)	60, 103
AluBI	AGCT	3 cut(s)	83, 89, 250
AluI	AGCT	3 cut(s)	83, 89, 250
Alw21I	GWGCWC	1 cut(s)	221
Alw26I	GTCTC	1 cut(s)	115
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	89
ApoI	RAATTY	1 cut(s)	26
AseI	ATTAAT	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	18
AvaII	GGWCC	1 cut(s)	18
BanI	GGYRCC	1 cut(s)	127
BauI	CACGAG	1 cut(s)	152
BbsI	GAAGAC	1 cut(s)	55
Bbv12I	GWGCWC	1 cut(s)	221
BbvI	GCAGC	1 cut(s)	76
BccI	CCATC	2 cut(s)	79, 150
BceAI	ACGGC	2 cut(s)	141, 199
BciT130I	CCWGG	2 cut(s)	62, 105
BcoDI	GTCTC	1 cut(s)	115
BfmI	CTRYAG	1 cut(s)	117
BisI	GCNGC	1 cut(s)	90
BlsI	GCNGC	1 cut(s)	91
Bme1390I	CCNGG	2 cut(s)	62, 105
Bme18I	GGWCC	1 cut(s)	18
BmgT120I	GGNCC	1 cut(s)	18
BmiI	GGNNCC	2 cut(s)	59, 129
BmrFI	CCNGG	2 cut(s)	62, 105
BmsI	GCATC	2 cut(s)	109, 196
BpiI	GAAGAC	1 cut(s)	55
BplI	GAGNNNNNCTC	2 cut(s)	203, 235
BpmI	CTGGAG	1 cut(s)	222
Bsc4I	CCNNNNNNNGG	1 cut(s)	15
Bse1I	ACTGG	2 cut(s)	20, 49
BseBI	CCWGG	2 cut(s)	62, 105
BseGI	GGATG	3 cut(s)	71, 100, 163
BseLI	CCNNNNNNNGG	1 cut(s)	15
BseNI	ACTGG	2 cut(s)	20, 49
BseRI	GAGGAG	1 cut(s)	227
BseXI	GCAGC	1 cut(s)	76
BshFI	GGCC	1 cut(s)	138
BshNI	GGYRCC	1 cut(s)	127
BsiHKAI	GWGCWC	1 cut(s)	221
BslI	CCNNNNNNNGG	1 cut(s)	15
BsmAI	GTCTC	1 cut(s)	115
BsnI	GGCC	1 cut(s)	138
Bsp1286I	GDGCHC	1 cut(s)	221
Bsp143I	GATC	1 cut(s)	3
BspANI	GGCC	1 cut(s)	138
BspLI	GGNNCC	2 cut(s)	59, 129
BspT107I	GGYRCC	1 cut(s)	127
BsrI	ACTGG	2 cut(s)	20, 49
BssMI	GATC	1 cut(s)	3
BssSI	CACGAG	1 cut(s)	152
Bst2BI	CACGAG	1 cut(s)	152
Bst2UI	CCWGG	2 cut(s)	62, 105
Bst4CI	ACNGT	1 cut(s)	22
BstC8I	GCNNGC	1 cut(s)	248
BstF5I	GGATG	3 cut(s)	71, 100, 163
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	1 cut(s)	115
BstMBI	GATC	1 cut(s)	3
BstMWI	GCNNNNNNNGC	2 cut(s)	89, 206
BstNI	CCWGG	2 cut(s)	62, 105
BstSCI	CCNGG	2 cut(s)	60, 103
BstSFI	CTRYAG	1 cut(s)	117
BstV1I	GCAGC	1 cut(s)	76
BstV2I	GAAGAC	1 cut(s)	55
BstXI	CCANNNNNNTGG	1 cut(s)	200
BsuRI	GGCC	1 cut(s)	138
BtsCI	GGATG	3 cut(s)	71, 100, 163
Cac8I	GCNNGC	1 cut(s)	248
Cfr13I	GGNCC	1 cut(s)	18
CviJI	RGCY	6 cut(s)	83, 89, 138, 186, 192, 250
CviKI_1	RGCY	6 cut(s)	83, 89, 138, 186, 192, 250
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eco47I	GGWCC	1 cut(s)	18
Eco57I	CTGAAG	1 cut(s)	105
EcoRII	CCWGG	2 cut(s)	60, 103
FaiI	YATR	2 cut(s)	119, 195
Fnu4HI	GCNGC	1 cut(s)	90
FokI	GGATG	3 cut(s)	58, 87, 170
Fsp4HI	GCNGC	1 cut(s)	90
GluI	GCNGC	1 cut(s)	90
GsuI	CTGGAG	1 cut(s)	222
HaeIII	GGCC	1 cut(s)	138
HpyCH4III	ACNGT	1 cut(s)	22
HpyCH4V	TGCA	2 cut(s)	92, 209
HpyF10VI	GCNNNNNNNGC	2 cut(s)	89, 206
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	2 cut(s)	97, 255
LpnPI	CCDG	7 cut(s)	30, 47, 74, 89, 90, 117, 186
Lsp1109I	GCAGC	1 cut(s)	76
LweI	GCATC	2 cut(s)	109, 196
MaeIII	GTNAC	1 cut(s)	121
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	1 cut(s)	60
MhlI	GDGCHC	1 cut(s)	221
MluCI	AATT	1 cut(s)	26
MmeI	TCCRAC	2 cut(s)	36, 211
MnlI	CCTC	4 cut(s)	19, 141, 149, 205
MseI	TTAA	1 cut(s)	177
MslI	CAYNNNNRTG	1 cut(s)	105
MspA1I	CMGCKG	1 cut(s)	83
MspR9I	CCNGG	2 cut(s)	62, 105
MvaI	CCWGG	2 cut(s)	62, 105
MwoI	GCNNNNNNNGC	2 cut(s)	89, 206
NdeII	GATC	1 cut(s)	3
NlaIV	GGNNCC	2 cut(s)	59, 129
PkrI	GCNGC	1 cut(s)	91
PshBI	ATTAAT	1 cut(s)	177
Psp6I	CCWGG	2 cut(s)	60, 103
PspGI	CCWGG	2 cut(s)	60, 103
PspN4I	GGNNCC	2 cut(s)	59, 129
PspPI	GGNCC	1 cut(s)	18
PvuII	CAGCTG	1 cut(s)	83
RseI	CAYNNNNRTG	1 cut(s)	105
SaqAI	TTAA	1 cut(s)	177
SatI	GCNGC	1 cut(s)	90
Sau3AI	GATC	1 cut(s)	3
Sau96I	GGNCC	1 cut(s)	18
ScrFI	CCNGG	2 cut(s)	62, 105
SduI	GDGCHC	1 cut(s)	221
SetI	ASST	4 cut(s)	85, 91, 133, 252
SfaNI	GCATC	2 cut(s)	109, 196
SfcI	CTRYAG	1 cut(s)	117
SinI	GGWCC	1 cut(s)	18
SmiMI	CAYNNNNRTG	1 cut(s)	105
Sse9I	AATT	1 cut(s)	26
StyD4I	CCNGG	2 cut(s)	60, 103
TaaI	ACNGT	1 cut(s)	22
TaqI	TCGA	1 cut(s)	31
TasI	AATT	1 cut(s)	26
Tru1I	TTAA	1 cut(s)	177
Tru9I	TTAA	1 cut(s)	177
TseI	GCWGC	1 cut(s)	89
VpaK11BI	GGWCC	1 cut(s)	18
VspI	ATTAAT	1 cut(s)	177
XapI	RAATTY	1 cut(s)	26

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.