Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0003862

Physical Location & Seq

Genomic Coordinates Reverse (-)

26015986 .. 26018400

Gene Structure 2415 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G289500.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGTCGATTAGGTCGCTATCCACCTGCCCTCAATTTGCCGCTAAAAGCTCGTCGGCAAGCGAAATCGGAACAAGCCCTAGCTGCGCAGTCCTCAACTTCTCCAGAAGTAGAAATTCAAGCATAAGGTTGTGTATGGGTAGCGGCAATGGAGGATTCGGACAAAATCCAAATGGGGTTGGTGACAGAGACGGCGTCATCATCGTCGACCATGGTTCGCGCCGCACGGAATCAAATCTCATGCTAAATGAGTTCGTGTCCATGTTTAAAGAGAGAACTGGGTACCCCATAGTAGAGCCTGCTCATATGGAGTTGGCCGAACCATCAATTCATGTTGCATTCAATTCCTGTGTTCTACAAGGGGCCAATCGGGTAATTGTGAGCCCTTTTTTCCTCTTACCTGGAAGACATTGGAACCAGGATATTCCATCCCTGACAGCTGAAGCTGCAAAGGAGCATCCTGGTGTCTCATATTTAGTAACGGCACCTCTTGGCCTTCATCCGCTACTCGTGGATGTTTTGAATGATAGGATCAATCACTGCTTAAGCCATATTGCTGGAGATGCAGAGGAGTGCTCTGTTTGTGTTGGAACAAACAAATGCCAGCTCCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004325 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0006778 GO:0006779 GO:0006783 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0009058 GO:0009507 GO:0009536 GO:0009987 GO:0016829 GO:0018130 GO:0019354 GO:0019438 GO:0033013 GO:0033014 GO:0034641 GO:0042168 GO:0042440 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046156 GO:0046483 GO:0048037 GO:0050896 GO:0051186 GO:0051188 GO:0051266 GO:0051536 GO:0051540 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00860 ko01100 ko01110 map00860 map01100 map01110

Pfam Domains

Protein Families

CbiX

Protein Analysis

204

Amino Acids

21.8

Weight (kDa)

6.29

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003862)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G50170 AT1G50170 AT1G50170
fragaria_vesca	FvH4_3g28470 FvH4_3g28470 FvH4_6g51400
malus_domestica	MD09G1028700.v1.1 MD17G1030300.v1.1
prunus_persica	Prupe.3G207400_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289500_v2.0.a1 Prupe.3G289700_v2.0.a1
pyrus_communis	pycom111g02280 pycom17g02770
rosa_chinensis	RchiOBHm_Chr1g0351301 RchiOBHm_Chr2g0173081 RchiOBHm_Chr7g0219921 RchiOBHm_Chr7g0228061 RchiOBHm_Chr7g0228091
rosa_laevigata	RLG00000022156
rosa_multiflora	Rmu_sc0011236.1_g000008 Rmu_sc0031614.1_g000001
rosa_roxburghii	Rroxscaffold_2G00079260
rosa_rugosa	Rorug02G0565000
rosa_samantha	Rh2AG644900 Rh2BG655700 Rh2CG620800 Rh2DG669000 Rh7DG395300
rosa_wichuraiana	Rw2G052970 Rw7G033220

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	32
Acc16I	TGCGCA	1 cut(s)	85
Acc36I	ACCTGC	1 cut(s)	32
Acc65I	GGTACC	1 cut(s)	279
AccB1I	GGYRCC	2 cut(s)	279, 481
AccI	GTMKAC	1 cut(s)	204
AccII	CGCG	1 cut(s)	217
AciI	CCGC	4 cut(s)	39, 141, 220, 500
AclWI	GGATC	1 cut(s)	536
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	1 cut(s)	112
AcuI	CTGAAG	1 cut(s)	459
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	1 cut(s)	281
AflII	CTTAAG	1 cut(s)	541
AgsI	TTSAA	3 cut(s)	117, 340, 520
AjnI	CCWGG	3 cut(s)	397, 414, 457
AluBI	AGCT	5 cut(s)	48, 81, 437, 443, 604
AluI	AGCT	5 cut(s)	48, 81, 437, 443, 604
Alw21I	GWGCWC	1 cut(s)	575
Alw26I	GTCTC	2 cut(s)	180, 469
AlwI	GGATC	1 cut(s)	536
AoxI	GGCC	3 cut(s)	312, 360, 490
ApeKI	GCWGC	2 cut(s)	81, 443
ApoI	RAATTY	1 cut(s)	112
Asp718I	GGTACC	1 cut(s)	279
AspLEI	GCGC	2 cut(s)	86, 219
AspS9I	GGNCC	1 cut(s)	360
AsuHPI	GGTGA	1 cut(s)	191
BanI	GGYRCC	2 cut(s)	279, 481
BanII	GRGCYC	1 cut(s)	383
BauI	CACGAG	1 cut(s)	506
BbsI	GAAGAC	1 cut(s)	409
Bbv12I	GWGCWC	1 cut(s)	575
BbvI	GCAGC	2 cut(s)	68, 430
BccI	CCATC	2 cut(s)	328, 433
BceAI	ACGGC	2 cut(s)	205, 495
BciT130I	CCWGG	3 cut(s)	399, 416, 459
BcoDI	GTCTC	2 cut(s)	180, 469
BfaI	CTAG	1 cut(s)	78
BfrI	CTTAAG	1 cut(s)	541
BfuAI	ACCTGC	1 cut(s)	32
BisI	GCNGC	5 cut(s)	39, 82, 142, 220, 444
BlsI	GCNGC	5 cut(s)	40, 83, 143, 221, 445
Bme1390I	CCNGG	3 cut(s)	399, 416, 459
BmgT120I	GGNCC	1 cut(s)	360
BmiI	GGNNCC	4 cut(s)	281, 361, 413, 483
BmrFI	CCNGG	3 cut(s)	399, 416, 459
BmrI	ACTGGG	1 cut(s)	285
BmsI	GCATC	2 cut(s)	463, 550
BmuI	ACTGGG	1 cut(s)	285
BpiI	GAAGAC	1 cut(s)	409
BplI	GAGNNNNNCTC	2 cut(s)	557, 589
BpmI	CTGGAG	2 cut(s)	85, 576
BsaHI	GRCGYC	1 cut(s)	192
BsaJI	CCNNGG	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	280
Bse3DI	GCAATG	1 cut(s)	151
BseBI	CCWGG	3 cut(s)	399, 416, 459
BseDI	CCNNGG	1 cut(s)	208
BseGI	GGATG	4 cut(s)	425, 454, 496, 517
BseMI	GCAATG	1 cut(s)	151
BseNI	ACTGG	1 cut(s)	280
BseRI	GAGGAG	1 cut(s)	581
BseXI	GCAGC	2 cut(s)	68, 430
Bsh1236I	CGCG	1 cut(s)	217
BshFI	GGCC	3 cut(s)	314, 362, 492
BshNI	GGYRCC	2 cut(s)	279, 481
BsiHKAI	GWGCWC	1 cut(s)	575
BsmAI	GTCTC	2 cut(s)	180, 469
BsmBI	CGTCTC	1 cut(s)	180
BsmI	GAATGC	1 cut(s)	335
BsnI	GGCC	3 cut(s)	314, 362, 492
Bsp1286I	GDGCHC	2 cut(s)	383, 575
Bsp143I	GATC	1 cut(s)	528
Bsp19I	CCATGG	1 cut(s)	208
BspACI	CCGC	4 cut(s)	39, 141, 220, 500
BspANI	GGCC	3 cut(s)	314, 362, 492
BspFNI	CGCG	1 cut(s)	217
BspLI	GGNNCC	4 cut(s)	281, 361, 413, 483
BspMI	ACCTGC	1 cut(s)	32
BspPI	GGATC	1 cut(s)	536
BspT107I	GGYRCC	2 cut(s)	279, 481
BspTI	CTTAAG	1 cut(s)	541
BsrDI	GCAATG	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	280
BssECI	CCNNGG	1 cut(s)	208
BssMI	GATC	1 cut(s)	528
BssNI	GRCGYC	1 cut(s)	192
BssSI	CACGAG	1 cut(s)	506
BssT1I	CCWWGG	1 cut(s)	208
Bst2BI	CACGAG	1 cut(s)	506
Bst2UI	CCWGG	3 cut(s)	399, 416, 459
BstACI	GRCGYC	1 cut(s)	192
BstAFI	CTTAAG	1 cut(s)	541
BstC8I	GCNNGC	3 cut(s)	58, 297, 602
BstDSI	CCRYGG	1 cut(s)	208
BstF5I	GGATG	4 cut(s)	425, 454, 496, 517
BstFNI	CGCG	1 cut(s)	217
BstHHI	GCGC	2 cut(s)	86, 219
BstKTI	GATC	1 cut(s)	531
BstMAI	GTCTC	2 cut(s)	180, 469
BstMBI	GATC	1 cut(s)	528
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 443, 560
BstNI	CCWGG	3 cut(s)	399, 416, 459
BstSCI	CCNGG	3 cut(s)	397, 414, 457
BstUI	CGCG	1 cut(s)	217
BstV1I	GCAGC	2 cut(s)	68, 430
BstV2I	GAAGAC	1 cut(s)	409
BstXI	CCANNNNNNTGG	1 cut(s)	554
BsuRI	GGCC	3 cut(s)	314, 362, 492
BtgI	CCRYGG	1 cut(s)	208
BtsCI	GGATG	4 cut(s)	425, 454, 496, 517
BtsI	GCAGTG	1 cut(s)	535
BtsIMutI	CAGTG	1 cut(s)	535
BveI	ACCTGC	1 cut(s)	32
Cac8I	GCNNGC	3 cut(s)	58, 297, 602
CfoI	GCGC	2 cut(s)	86, 219
Cfr13I	GGNCC	1 cut(s)	360
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	1 cut(s)	280
CviAII	CATG	4 cut(s)	209, 238, 259, 329
CviQI	GTAC	1 cut(s)	280
DpnI	GATC	1 cut(s)	530
DpnII	GATC	1 cut(s)	528
DraI	TTTAAA	1 cut(s)	265
EaeI	YGGCCR	1 cut(s)	312
Eco130I	CCWWGG	1 cut(s)	208
Eco24I	GRGCYC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	459
EcoRII	CCWGG	3 cut(s)	397, 414, 457
EcoT14I	CCWWGG	1 cut(s)	208
EcoT38I	GRGCYC	1 cut(s)	383
ErhI	CCWWGG	1 cut(s)	208
Esp3I	CGTCTC	1 cut(s)	180
FaeI	CATG	4 cut(s)	212, 241, 262, 332
FatI	CATG	4 cut(s)	208, 237, 258, 328
FauNDI	CATATG	1 cut(s)	303
FblI	GTMKAC	1 cut(s)	204
Fnu4HI	GCNGC	5 cut(s)	39, 82, 142, 220, 444
FokI	GGATG	4 cut(s)	412, 441, 483, 524
FriOI	GRGCYC	1 cut(s)	383
Fsp4HI	GCNGC	5 cut(s)	39, 82, 142, 220, 444
FspBI	CTAG	1 cut(s)	78
FspI	TGCGCA	1 cut(s)	85
GlaI	GCGC	2 cut(s)	85, 218
GluI	GCNGC	5 cut(s)	39, 82, 142, 220, 444
GsuI	CTGGAG	2 cut(s)	85, 576
HaeIII	GGCC	3 cut(s)	314, 362, 492
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	2 cut(s)	86, 219
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	4 cut(s)	212, 241, 262, 332
Hin6I	GCGC	2 cut(s)	84, 217
HinP1I	GCGC	2 cut(s)	84, 217
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HinfI	GANTC	2 cut(s)	153, 227
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	2 cut(s)	68, 158
Hpy188III	TCNNGA	1 cut(s)	102
Hpy8I	GTNNAC	1 cut(s)	205
Hpy99I	CGWCG	2 cut(s)	55, 206
HpyAV	CCTTC	1 cut(s)	503
HpyCH4V	TGCA	3 cut(s)	335, 446, 563
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 443, 560
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	4 cut(s)	212, 241, 262, 332
HspAI	GCGC	2 cut(s)	84, 217
KpnI	GGTACC	1 cut(s)	283
Kzo9I	GATC	1 cut(s)	528
LmnI	GCTCC	2 cut(s)	451, 609
Lsp1109I	GCAGC	2 cut(s)	68, 430
LweI	GCATC	2 cut(s)	463, 550
MaeI	CTAG	1 cut(s)	78
MaeIII	GTNAC	2 cut(s)	179, 475
MalI	GATC	1 cut(s)	530
MboI	GATC	1 cut(s)	528
MboII	GAAGA	1 cut(s)	414
MhlI	GDGCHC	2 cut(s)	383, 575
MluCI	AATT	5 cut(s)	32, 112, 324, 340, 372
MmeI	TCCRAC	1 cut(s)	565
MnlI	CCTC	6 cut(s)	39, 101, 143, 401, 495, 559
MseI	TTAA	2 cut(s)	264, 542
MslI	CAYNNNNRTG	1 cut(s)	459
MspA1I	CMGCKG	1 cut(s)	437
MspCI	CTTAAG	1 cut(s)	541
MspR9I	CCNGG	3 cut(s)	399, 416, 459
Mva1269I	GAATGC	1 cut(s)	335
MvaI	CCWGG	3 cut(s)	399, 416, 459
MvnI	CGCG	1 cut(s)	217
MwoI	GCNNNNNNNGC	3 cut(s)	81, 443, 560
NcoI	CCATGG	1 cut(s)	208
NdeI	CATATG	1 cut(s)	303
NdeII	GATC	1 cut(s)	528
NlaIII	CATG	4 cut(s)	212, 241, 262, 332
NlaIV	GGNNCC	4 cut(s)	281, 361, 413, 483
NmuCI	GTSAC	1 cut(s)	179
NsbI	TGCGCA	1 cut(s)	85
PaqCI	CACCTGC	1 cut(s)	32
PctI	GAATGC	1 cut(s)	335
PfeI	GAWTC	2 cut(s)	153, 227
PflFI	GACNNNGTC	1 cut(s)	191
PkrI	GCNGC	5 cut(s)	40, 83, 143, 221, 445
Psp6I	CCWGG	3 cut(s)	397, 414, 457
PspGI	CCWGG	3 cut(s)	397, 414, 457
PspN4I	GGNNCC	4 cut(s)	281, 361, 413, 483
PspPI	GGNCC	1 cut(s)	360
PsyI	GACNNNGTC	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	437
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
RseI	CAYNNNNRTG	1 cut(s)	459
SalI	GTCGAC	1 cut(s)	203
SaqAI	TTAA	2 cut(s)	264, 542
SatI	GCNGC	5 cut(s)	39, 82, 142, 220, 444
Sau3AI	GATC	1 cut(s)	528
Sau96I	GGNCC	1 cut(s)	360
ScrFI	CCNGG	3 cut(s)	399, 416, 459
SduI	GDGCHC	2 cut(s)	383, 575
SfaNI	GCATC	2 cut(s)	463, 550
SmiMI	CAYNNNNRTG	1 cut(s)	459
SmlI	CTYRAG	1 cut(s)	541
SmoI	CTYRAG	1 cut(s)	541
Sse9I	AATT	5 cut(s)	32, 112, 324, 340, 372
SsiI	CCGC	4 cut(s)	39, 141, 220, 500
SspMI	CTAG	1 cut(s)	78
StyD4I	CCNGG	3 cut(s)	397, 414, 457
StyI	CCWWGG	1 cut(s)	208
TaqI	TCGA	2 cut(s)	5, 204
TasI	AATT	5 cut(s)	32, 112, 324, 340, 372
TauI	GCSGC	3 cut(s)	41, 144, 222
TfiI	GAWTC	2 cut(s)	153, 227
Tru1I	TTAA	2 cut(s)	264, 542
Tru9I	TTAA	2 cut(s)	264, 542
TscAI	CASTG	1 cut(s)	542
TseFI	GTSAC	1 cut(s)	179
TseI	GCWGC	2 cut(s)	81, 443
Tsp45I	GTSAC	1 cut(s)	179
TspDTI	ATGAA	2 cut(s)	317, 485
TspGWI	ACGGA	1 cut(s)	239
TspRI	CASTG	1 cut(s)	542
Tth111I	GACNNNGTC	1 cut(s)	191
Vha464I	CTTAAG	1 cut(s)	541
XapI	RAATTY	1 cut(s)	112
XmiI	GTMKAC	1 cut(s)	204
XspI	CTAG	1 cut(s)	78

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.