Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0005495

Physical Location & Seq

Genomic Coordinates Reverse (-)

22523704 .. 22526440

Gene Structure 2737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g29460.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCGGGAATAGCTATAGTTTTGGATCTGCTGAGGAAAAACCCAAGCGTTACCTCCCAAAGTCTCCACGCTTCTGGGTTCTTCTCCGCTAAAGCAGCCGCTTCCGCCGCCGCCGCCTCCGTCGCCGCTGGTGCTCCTTACGTCTACAATTCCTTGTTCGGTAATTTTAGGGTACCAGTGGCGTATTGCGATGCTGGAGCAACGTTGTCGGACGATTACATCTCTAATTTACGGAGTGCGTCCTTAAAAATATTTCAGAATGATGCTGTGAGTTACGGTGCCAAGGAATATCCAGTCGAGCTAAAGCCTCTATTCTCAGCTTTCGAATTGAAGAATTTTACTCTGACAACTTTTAGGTCGTTTTTAATAAACTTCTTACCTCTTGCGGAGCCTCGTGCAAACTTGGAATCAGACGATGAGGACTTCCTGGAGGACACTGAAGAACAACAACGTGTAGATTACGTTGTTCCACTAAAAAAATCACTAAAGCAAATTGCACGTGACGTAACTGTCACAACCACTAGACGGATACTAGAAAAAATTTCTGTTTATTATGTGTCACAGAGAATGGCATGGAAACTTCTGAAAGATCTCTCAAAGTCTGCCATGAGGAAAGCTGGAAGAAGAATGCCAACTTATGTTTTCTTCTTCAGTGTTAGCAAAACAACTATGAGAGGACACTGTCTGGCCATTGCAGCATCTTGGATCATCTCAGTTGGCATTGATATCTACCGAACTTGTTATGGAATGATGAACTCTACTGAAGATATTGATGAAATTGGTACAGCACAAAGGCTTAAACTTCTTGGGAATAAGGTTGGGCGCACTACTCTCAAGTGTGGTGCGTCACTGATTTTTGCTTCGATTGGGGCAGGTATTGGTGCCACTCTTTTCCACCCTTCAACTGGCCAGTGGGTTGGTTGTGTTTTGGGAGATGTGGCAGGACCTCTGATTGTCTCATATTCCCTTTACAGGTCTTTCGATCCAGAAATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

332

Amino Acids

36.28

Weight (kDa)

8.95

Isoelectric Point (pI)

25.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55610 AT5G55610
fragaria_vesca	FvH4_3g29460
malus_domestica	MD00G1099100.v1.1 MD11G1201600.v1.1
prunus_persica	Prupe.4G240000_v2.0.a1
pyrus_communis	pycom03g13850 pycom11g17410
rosa_chinensis	RchiOBHm_Chr5g0053951 RchiOBHm_Chr5g0077271
rosa_laevigata	RLG00000034912 RLG00000036679
rosa_multiflora	Rmu_sc0008383.1_g000005 Rmu_sc0023670.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004720 Rroxscaffold_1G00026690
rosa_rugosa	Rorug05G0284700 Rorug05G0453200
rosa_samantha	Rh5AG354000 Rh5AG508300 Rh5BG365800 Rh5BG529500 Rh5CG390600 Rh5CG554000 Rh5DG380700 Rh5DG542000
rosa_wichuraiana	Rw0G002080 Rw5G033370 Rw5G046930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	509
Acc36I	ACCTGC	1 cut(s)	863
Acc65I	GGTACC	1 cut(s)	172
AccB1I	GGYRCC	3 cut(s)	172, 278, 881
AccI	GTMKAC	1 cut(s)	144
AciI	CCGC	9 cut(s)	5, 87, 99, 105, 108, 111, 114, 126, 386
AclI	AACGTT	1 cut(s)	203
AclWI	GGATC	3 cut(s)	33, 713, 977
AcoI	YGGCCR	2 cut(s)	687, 907
AcsI	RAATTY	3 cut(s)	334, 540, 990
AcuI	CTGAAG	3 cut(s)	459, 634, 783
AcvI	CACGTG	1 cut(s)	500
AfaI	GTAC	2 cut(s)	174, 784
AfiI	CCNNNNNNNGG	3 cut(s)	525, 905, 972
AflIII	ACRYGT	1 cut(s)	451
AgsI	TTSAA	2 cut(s)	331, 903
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	4 cut(s)	14, 301, 320, 617
AluI	AGCT	4 cut(s)	14, 301, 320, 617
Alw21I	GWGCWC	1 cut(s)	136
Alw26I	GTCTC	2 cut(s)	68, 961
AlwI	GGATC	3 cut(s)	33, 713, 977
AoxI	GGCC	2 cut(s)	687, 907
ApeKI	GCWGC	2 cut(s)	95, 695
ApoI	RAATTY	3 cut(s)	334, 540, 990
Asp718I	GGTACC	1 cut(s)	172
AspLEI	GCGC	1 cut(s)	825
AspS9I	GGNCC	1 cut(s)	944
AsuII	TTCGAA	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	944
BalI	TGGCCA	2 cut(s)	689, 909
BanI	GGYRCC	3 cut(s)	172, 278, 881
BauI	CACGAG	1 cut(s)	393
BbrPI	CACGTG	1 cut(s)	500
Bbv12I	GWGCWC	1 cut(s)	136
BbvCI	CCTCAGC	1 cut(s)	32
BbvI	GCAGC	2 cut(s)	107, 707
BcgI	CGANNNNNNTGC	2 cut(s)	189, 223
BciT130I	CCWGG	1 cut(s)	428
BciVI	GTATCC	1 cut(s)	522
BcoDI	GTCTC	2 cut(s)	68, 961
BfaI	CTAG	2 cut(s)	522, 533
BfmI	CTRYAG	1 cut(s)	15
BfuAI	ACCTGC	1 cut(s)	863
BfuI	GTATCC	1 cut(s)	522
BglII	AGATCT	1 cut(s)	589
BisI	GCNGC	7 cut(s)	96, 99, 108, 111, 114, 126, 696
BlsI	GCNGC	7 cut(s)	97, 100, 109, 112, 115, 127, 697
Bme1390I	CCNGG	1 cut(s)	428
Bme18I	GGWCC	1 cut(s)	944
BmgT120I	GGNCC	1 cut(s)	944
BmiI	GGNNCC	4 cut(s)	174, 280, 390, 883
BmrFI	CCNGG	1 cut(s)	428
BmsI	GCATC	3 cut(s)	181, 253, 707
BpmI	CTGGAG	2 cut(s)	216, 449
Bpu10I	CCTNAGC	1 cut(s)	32
Bpu14I	TTCGAA	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	818
BsaAI	YACGTR	1 cut(s)	500
BsaJI	CCNNGG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	3 cut(s)	525, 905, 972
Bse1I	ACTGG	4 cut(s)	176, 293, 910, 910
Bse3DI	GCAATG	1 cut(s)	690
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	1 cut(s)	282
BseLI	CCNNNNNNNGG	3 cut(s)	525, 905, 972
BseMI	GCAATG	1 cut(s)	690
BseMII	CTCAG	3 cut(s)	23, 330, 726
BseNI	ACTGG	4 cut(s)	176, 293, 910, 910
BseXI	GCAGC	2 cut(s)	107, 707
BshFI	GGCC	2 cut(s)	689, 909
BshNI	GGYRCC	3 cut(s)	172, 278, 881
BsiHKAI	GWGCWC	1 cut(s)	136
BslI	CCNNNNNNNGG	3 cut(s)	525, 905, 972
BsmAI	GTCTC	2 cut(s)	68, 961
BsmI	GAATGC	1 cut(s)	633
BsnI	GGCC	2 cut(s)	689, 909
Bsp119I	TTCGAA	1 cut(s)	324
Bsp1286I	GDGCHC	1 cut(s)	136
Bsp143I	GATC	4 cut(s)	25, 589, 705, 982
BspACI	CCGC	9 cut(s)	5, 87, 99, 105, 108, 111, 114, 126, 386
BspANI	GGCC	2 cut(s)	689, 909
BspCNI	CTCAG	3 cut(s)	24, 329, 725
BspLI	GGNNCC	4 cut(s)	174, 280, 390, 883
BspMI	ACCTGC	1 cut(s)	863
BspPI	GGATC	3 cut(s)	33, 713, 977
BspT104I	TTCGAA	1 cut(s)	324
BspT107I	GGYRCC	3 cut(s)	172, 278, 881
BsrDI	GCAATG	1 cut(s)	690
BsrI	ACTGG	4 cut(s)	176, 293, 910, 910
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	4 cut(s)	25, 589, 705, 982
BssSI	CACGAG	1 cut(s)	393
BssT1I	CCWWGG	1 cut(s)	282
Bst2BI	CACGAG	1 cut(s)	393
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	3 cut(s)	278, 511, 683
BstBAI	YACGTR	1 cut(s)	500
BstBI	TTCGAA	1 cut(s)	324
BstDEI	CTNAG	3 cut(s)	32, 316, 712
BstHHI	GCGC	1 cut(s)	825
BstKTI	GATC	4 cut(s)	28, 592, 708, 985
BstMAI	GTCTC	2 cut(s)	68, 961
BstMBI	GATC	4 cut(s)	25, 589, 705, 982
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 95, 104, 107, 113, 122, 131, 695
BstNI	CCWGG	1 cut(s)	428
BstSCI	CCNGG	1 cut(s)	426
BstSFI	CTRYAG	1 cut(s)	15
BstV1I	GCAGC	2 cut(s)	107, 707
BstX2I	RGATCY	2 cut(s)	25, 589
BstXI	CCANNNNNNTGG	2 cut(s)	74, 917
BstYI	RGATCY	2 cut(s)	25, 589
BsuI	GTATCC	1 cut(s)	522
BsuRI	GGCC	2 cut(s)	689, 909
BtgZI	GCGATG	1 cut(s)	204
BtsIMutI	CAGTG	6 cut(s)	183, 435, 658, 679, 848, 917
BveI	ACCTGC	1 cut(s)	863
CfoI	GCGC	1 cut(s)	825
Cfr13I	GGNCC	1 cut(s)	944
CseI	GACGC	2 cut(s)	228, 834
Csp6I	GTAC	2 cut(s)	173, 783
CviAII	CATG	2 cut(s)	573, 607
CviQI	GTAC	2 cut(s)	173, 783
DdeI	CTNAG	3 cut(s)	32, 316, 712
DpnI	GATC	4 cut(s)	27, 591, 707, 984
DpnII	GATC	4 cut(s)	25, 589, 705, 982
DrdI	GACNNNNNNGTC	1 cut(s)	509
DseDI	GACNNNNNNGTC	1 cut(s)	509
EaeI	YGGCCR	2 cut(s)	687, 907
EciI	GGCGGA	1 cut(s)	94
Eco130I	CCWWGG	1 cut(s)	282
Eco32I	GATATC	1 cut(s)	727
Eco47I	GGWCC	1 cut(s)	944
Eco57I	CTGAAG	3 cut(s)	459, 634, 783
Eco72I	CACGTG	1 cut(s)	500
EcoO109I	RGGNCCY	1 cut(s)	944
EcoRII	CCWGG	1 cut(s)	426
EcoRV	GATATC	1 cut(s)	727
EcoT14I	CCWWGG	1 cut(s)	282
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	2 cut(s)	576, 610
FaiI	YATR	8 cut(s)	17, 555, 574, 608, 639, 671, 744, 961
FatI	CATG	2 cut(s)	572, 606
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	7 cut(s)	96, 99, 108, 111, 114, 126, 696
Fsp4HI	GCNGC	7 cut(s)	96, 99, 108, 111, 114, 126, 696
FspBI	CTAG	2 cut(s)	522, 533
GlaI	GCGC	1 cut(s)	824
GluI	GCNGC	7 cut(s)	96, 99, 108, 111, 114, 126, 696
GsuI	CTGGAG	2 cut(s)	216, 449
HaeIII	GGCC	2 cut(s)	689, 909
HgaI	GACGC	2 cut(s)	228, 834
HhaI	GCGC	1 cut(s)	825
Hin1II	CATG	2 cut(s)	576, 610
Hin6I	GCGC	1 cut(s)	823
HinP1I	GCGC	1 cut(s)	823
HinfI	GANTC	1 cut(s)	407
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	6 cut(s)	211, 258, 345, 412, 585, 951
Hpy188III	TCNNGA	1 cut(s)	986
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	1 cut(s)	909
HpyCH4III	ACNGT	3 cut(s)	278, 511, 683
HpyCH4IV	ACGT	6 cut(s)	141, 203, 451, 462, 499, 504
HpyCH4V	TGCA	3 cut(s)	398, 497, 695
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 95, 104, 107, 113, 122, 131, 695
HpyF3I	CTNAG	3 cut(s)	32, 316, 712
HpySE526I	ACGT	6 cut(s)	141, 203, 451, 462, 499, 504
Hsp92II	CATG	2 cut(s)	576, 610
HspAI	GCGC	1 cut(s)	823
KpnI	GGTACC	1 cut(s)	176
Kzo9I	GATC	4 cut(s)	25, 589, 705, 982
LmnI	GCTCC	3 cut(s)	139, 197, 388
Lsp1109I	GCAGC	2 cut(s)	107, 707
LweI	GCATC	3 cut(s)	181, 253, 707
MaeI	CTAG	2 cut(s)	522, 533
MaeII	ACGT	6 cut(s)	141, 203, 451, 462, 499, 504
MaeIII	GTNAC	7 cut(s)	49, 272, 500, 505, 511, 558, 846
MalI	GATC	4 cut(s)	27, 591, 707, 984
MboI	GATC	4 cut(s)	25, 589, 705, 982
MboII	GAAGA	8 cut(s)	73, 343, 452, 633, 636, 637, 640, 776
MflI	RGATCY	2 cut(s)	25, 589
MhlI	GDGCHC	1 cut(s)	136
MlsI	TGGCCA	2 cut(s)	689, 909
MluCI	AATT	9 cut(s)	148, 163, 226, 326, 334, 492, 540, 777, 990
MluNI	TGGCCA	2 cut(s)	689, 909
MmeI	TCCRAC	1 cut(s)	189
Mox20I	TGGCCA	2 cut(s)	689, 909
MscI	TGGCCA	2 cut(s)	689, 909
MseI	TTAA	3 cut(s)	245, 365, 798
Msp20I	TGGCCA	2 cut(s)	689, 909
MspA1I	CMGCKG	1 cut(s)	128
MspR9I	CCNGG	1 cut(s)	428
Mva1269I	GAATGC	1 cut(s)	633
MvaI	CCWGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	8 cut(s)	11, 95, 104, 107, 113, 122, 131, 695
NdeII	GATC	4 cut(s)	25, 589, 705, 982
NlaIII	CATG	2 cut(s)	576, 610
NlaIV	GGNNCC	4 cut(s)	174, 280, 390, 883
NmuCI	GTSAC	4 cut(s)	500, 511, 558, 846
NspV	TTCGAA	1 cut(s)	324
PctI	GAATGC	1 cut(s)	633
PfeI	GAWTC	1 cut(s)	407
PflFI	GACNNNGTC	1 cut(s)	681
PfoI	TCCNGGA	1 cut(s)	426
PkrI	GCNGC	7 cut(s)	97, 100, 109, 112, 115, 127, 697
PmaCI	CACGTG	1 cut(s)	500
PmlI	CACGTG	1 cut(s)	500
Ppu21I	YACGTR	1 cut(s)	500
PpuMI	RGGWCCY	1 cut(s)	944
Psp1406I	AACGTT	1 cut(s)	203
Psp5II	RGGWCCY	1 cut(s)	944
Psp6I	CCWGG	1 cut(s)	426
PspCI	CACGTG	1 cut(s)	500
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	4 cut(s)	174, 280, 390, 883
PspPI	GGNCC	1 cut(s)	944
PspPPI	RGGWCCY	1 cut(s)	944
PsuI	RGATCY	2 cut(s)	25, 589
PsyI	GACNNNGTC	1 cut(s)	681
RsaI	GTAC	2 cut(s)	174, 784
RsaNI	GTAC	2 cut(s)	173, 783
SaqAI	TTAA	3 cut(s)	245, 365, 798
SatI	GCNGC	7 cut(s)	96, 99, 108, 111, 114, 126, 696
Sau3AI	GATC	4 cut(s)	25, 589, 705, 982
Sau96I	GGNCC	1 cut(s)	944
ScrFI	CCNGG	1 cut(s)	428
SduI	GDGCHC	1 cut(s)	136
SfaNI	GCATC	3 cut(s)	181, 253, 707
SfcI	CTRYAG	1 cut(s)	15
SfuI	TTCGAA	1 cut(s)	324
SinI	GGWCC	1 cut(s)	944
SmlI	CTYRAG	1 cut(s)	833
SmoI	CTYRAG	1 cut(s)	833
Sse9I	AATT	9 cut(s)	148, 163, 226, 326, 334, 492, 540, 777, 990
SsiI	CCGC	9 cut(s)	5, 87, 99, 105, 108, 111, 114, 126, 386
SspI	AATATT	1 cut(s)	252
SspMI	CTAG	2 cut(s)	522, 533
StyD4I	CCNGG	1 cut(s)	426
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	3 cut(s)	278, 511, 683
TaiI	ACGT	6 cut(s)	144, 206, 454, 465, 502, 507
TaqI	TCGA	4 cut(s)	297, 324, 863, 981
TasI	AATT	9 cut(s)	148, 163, 226, 326, 334, 492, 540, 777, 990
TauI	GCSGC	5 cut(s)	101, 110, 113, 116, 128
TfiI	GAWTC	1 cut(s)	407
Tru1I	TTAA	3 cut(s)	245, 365, 798
Tru9I	TTAA	3 cut(s)	245, 365, 798
TscAI	CASTG	6 cut(s)	183, 442, 658, 686, 855, 917
TseFI	GTSAC	4 cut(s)	500, 511, 558, 846
TseI	GCWGC	2 cut(s)	95, 695
Tsp45I	GTSAC	4 cut(s)	500, 511, 558, 846
TspDTI	ATGAA	2 cut(s)	767, 789
TspGWI	ACGGA	3 cut(s)	109, 247, 541
TspRI	CASTG	6 cut(s)	183, 442, 658, 686, 855, 917
Tth111I	GACNNNGTC	1 cut(s)	681
VpaK11BI	GGWCC	1 cut(s)	944
XapI	RAATTY	3 cut(s)	334, 540, 990
XcmI	CCANNNNNNNNNTGG	1 cut(s)	902
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	2 cut(s)	522, 533

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.