Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005495

Physical Location & Seq

Genomic Coordinates Reverse (-)

77122454 .. 77123410

Gene Structure 957 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG554000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGTTCTACTTACCTCTTCTGGAGCCTCGTAGAAACTTGCAAGAGGAGGATGATGACTTCCTGCGGGACACTGAAGAAGAACAACATGTAGATTATGTTGCTCCATTCAAAAAATCACTAAAGAAAATTGCTCGTGATGCTACTGTCTCAACCACTAAACGGATTCTAGAAAGAAGTTCTGTTCATTATGTGTCACAGAGAATGGCATGGAAACTTCTGAAAGATACCTCAAAGTCTGCGATGAGGAAAGCTGGAAGAAGAATGCCAACTTACGTTTTCTTCTTCAGTGTTAGCAAGATGACTATGAGAGGACACTTTCTAGATGTTGCAGCATCTTGGATCATCTCAGTTAGCATTGATATCTACCGAACTTTTTCTGGAATGACAAACTCTAAAGAAGTGGTTGATGAAATTGATACACCACAAAAGCTTAAACGTCTTGGGAATAAGGTTTGGGGCACTACTTTCAGGTGTGGTGCATCACTGATTTTTGCTTCGATTGGAGCAGGTATTGGCGCCACTCTTTTTCGCCCTTCAACTGGCCAGTGGATTGGTAGTATTCTGGGAGATGTGGCCGGGCCTATTATTGTCTCATATTGCCTTGAGAAGTCTTTCCATGCAAAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

23.7

Weight (kDa)

9.61

Isoelectric Point (pI)

38.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55610 AT5G55610
fragaria_vesca	FvH4_3g29460
malus_domestica	MD00G1099100.v1.1 MD11G1201600.v1.1
prunus_persica	Prupe.4G240000_v2.0.a1
pyrus_communis	pycom03g13850 pycom11g17410
rosa_chinensis	RchiOBHm_Chr5g0053951 RchiOBHm_Chr5g0077271
rosa_laevigata	RLG00000034912 RLG00000036679
rosa_multiflora	Rmu_sc0008383.1_g000005 Rmu_sc0023670.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004720 Rroxscaffold_1G00026690
rosa_rugosa	Rorug05G0284700 Rorug05G0453200
rosa_samantha	Rh5AG354000 Rh5AG508300 Rh5BG365800 Rh5BG529500 Rh5CG390600 Rh5CG554000 Rh5DG380700 Rh5DG542000
rosa_wichuraiana	Rw0G002080 Rw5G033370 Rw5G046930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	497
AccB1I	GGYRCC	1 cut(s)	515
AciI	CCGC	1 cut(s)	64
AclWI	GGATC	1 cut(s)	347
AcoI	YGGCCR	2 cut(s)	541, 573
AcuI	CTGAAG	2 cut(s)	93, 268
AcyI	GRCGYC	1 cut(s)	516
AfiI	CCNNNNNNNGG	2 cut(s)	159, 539
AflIII	ACRYGT	1 cut(s)	85
AgsI	TTSAA	2 cut(s)	109, 537
AluBI	AGCT	2 cut(s)	251, 430
AluI	AGCT	2 cut(s)	251, 430
Alw26I	GTCTC	2 cut(s)	151, 595
AlwI	GGATC	1 cut(s)	347
AoxI	GGCC	3 cut(s)	541, 573, 578
ApeKI	GCWGC	1 cut(s)	329
Asp700I	GAANNNNTTC	2 cut(s)	373, 611
AspLEI	GCGC	1 cut(s)	518
AspS9I	GGNCC	1 cut(s)	578
AsuC2I	CCSGG	1 cut(s)	577
BaeGI	GKGCMC	1 cut(s)	461
BalI	TGGCCA	1 cut(s)	543
BanI	GGYRCC	1 cut(s)	515
BauI	CACGAG	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	341
BcnI	CCSGG	1 cut(s)	577
BcoDI	GTCTC	2 cut(s)	151, 595
BfaI	CTAG	2 cut(s)	167, 320
BfoI	RGCGCY	1 cut(s)	519
BfuAI	ACCTGC	1 cut(s)	497
BisI	GCNGC	1 cut(s)	330
BlsI	GCNGC	1 cut(s)	331
Bme1390I	CCNGG	1 cut(s)	577
BmgT120I	GGNCC	1 cut(s)	578
BmiI	GGNNCC	2 cut(s)	24, 517
BmrFI	CCNGG	1 cut(s)	577
BmsI	GCATC	3 cut(s)	127, 341, 488
BpmI	CTGGAG	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	623
BpuMI	CCSGG	1 cut(s)	577
BsaHI	GRCGYC	1 cut(s)	516
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 539
Bse1I	ACTGG	2 cut(s)	544, 544
BseGI	GGATG	1 cut(s)	55
BseLI	CCNNNNNNNGG	2 cut(s)	159, 539
BseMII	CTCAG	1 cut(s)	360
BseNI	ACTGG	2 cut(s)	544, 544
BseRI	GAGGAG	1 cut(s)	59
BseSI	GKGCMC	1 cut(s)	461
BseXI	GCAGC	1 cut(s)	341
BshFI	GGCC	3 cut(s)	543, 575, 580
BshNI	GGYRCC	1 cut(s)	515
BsiSI	CCGG	1 cut(s)	576
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	159, 539
BsmAI	GTCTC	2 cut(s)	151, 595
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	267
BsnI	GGCC	3 cut(s)	543, 575, 580
Bsp1286I	GDGCHC	1 cut(s)	461
Bsp143I	GATC	1 cut(s)	339
BspACI	CCGC	1 cut(s)	64
BspANI	GGCC	3 cut(s)	543, 575, 580
BspCNI	CTCAG	1 cut(s)	359
BspLI	GGNNCC	2 cut(s)	24, 517
BspMI	ACCTGC	1 cut(s)	497
BspPI	GGATC	1 cut(s)	347
BspT107I	GGYRCC	1 cut(s)	515
BsrI	ACTGG	2 cut(s)	544, 544
BssMI	GATC	1 cut(s)	339
BssNI	GRCGYC	1 cut(s)	516
BssSI	CACGAG	1 cut(s)	132
Bst2BI	CACGAG	1 cut(s)	132
Bst4CI	ACNGT	1 cut(s)	145
Bst6I	CTCTTC	1 cut(s)	21
BstACI	GRCGYC	1 cut(s)	516
BstDEI	CTNAG	1 cut(s)	346
BstF5I	GGATG	1 cut(s)	55
BstH2I	RGCGCY	1 cut(s)	519
BstHHI	GCGC	1 cut(s)	518
BstKTI	GATC	1 cut(s)	342
BstMAI	GTCTC	2 cut(s)	151, 595
BstMBI	GATC	1 cut(s)	339
BstMWI	GCNNNNNNNGC	1 cut(s)	137
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	1 cut(s)	575
BstSLI	GKGCMC	1 cut(s)	461
BstV1I	GCAGC	1 cut(s)	341
BstXI	CCANNNNNNTGG	1 cut(s)	551
BsuRI	GGCC	3 cut(s)	543, 575, 580
BtgZI	GCGATG	1 cut(s)	254
BtsCI	GGATG	1 cut(s)	55
BtsIMutI	CAGTG	4 cut(s)	69, 292, 482, 551
BveI	ACCTGC	1 cut(s)	497
CfoI	GCGC	1 cut(s)	518
Cfr13I	GGNCC	1 cut(s)	578
CviAII	CATG	3 cut(s)	86, 207, 617
CviJI	RGCY	6 cut(s)	25, 251, 430, 543, 575, 580
CviKI_1	RGCY	6 cut(s)	25, 251, 430, 543, 575, 580
DdeI	CTNAG	1 cut(s)	346
DinI	GGCGCC	1 cut(s)	517
DpnI	GATC	1 cut(s)	341
DpnII	GATC	1 cut(s)	339
EaeI	YGGCCR	2 cut(s)	541, 573
Eam1104I	CTCTTC	1 cut(s)	21
EarI	CTCTTC	1 cut(s)	21
Eco32I	GATATC	1 cut(s)	361
Eco57I	CTGAAG	2 cut(s)	93, 268
EcoRV	GATATC	1 cut(s)	361
EgeI	GGCGCC	1 cut(s)	517
EheI	GGCGCC	1 cut(s)	517
FaeI	CATG	3 cut(s)	89, 210, 620
FaiI	YATR	7 cut(s)	87, 96, 189, 208, 305, 595, 618
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	3 cut(s)	85, 206, 616
FauI	CCCGC	1 cut(s)	57
Fnu4HI	GCNGC	1 cut(s)	330
FokI	GGATG	1 cut(s)	62
Fsp4HI	GCNGC	1 cut(s)	330
FspBI	CTAG	2 cut(s)	167, 320
GlaI	GCGC	1 cut(s)	517
GluI	GCNGC	1 cut(s)	330
GsuI	CTGGAG	1 cut(s)	41
HaeII	RGCGCY	1 cut(s)	519
HaeIII	GGCC	3 cut(s)	543, 575, 580
HapII	CCGG	1 cut(s)	576
HhaI	GCGC	1 cut(s)	518
Hin1I	GRCGYC	1 cut(s)	516
Hin1II	CATG	3 cut(s)	89, 210, 620
Hin6I	GCGC	1 cut(s)	516
HinP1I	GCGC	1 cut(s)	516
HindIII	AAGCTT	1 cut(s)	428
HinfI	GANTC	1 cut(s)	163
HpaII	CCGG	1 cut(s)	576
Hpy188I	TCNGA	1 cut(s)	219
Hpy188III	TCNNGA	5 cut(s)	20, 134, 167, 320, 378
HpyAV	CCTTC	1 cut(s)	543
HpyCH4III	ACNGT	1 cut(s)	145
HpyCH4IV	ACGT	2 cut(s)	273, 436
HpyCH4V	TGCA	4 cut(s)	40, 329, 479, 620
HpyF10VI	GCNNNNNNNGC	1 cut(s)	137
HpyF3I	CTNAG	1 cut(s)	346
HpySE526I	ACGT	2 cut(s)	273, 436
Hsp92I	GRCGYC	1 cut(s)	516
Hsp92II	CATG	3 cut(s)	89, 210, 620
HspAI	GCGC	1 cut(s)	516
KasI	GGCGCC	1 cut(s)	515
Kzo9I	GATC	1 cut(s)	339
LmnI	GCTCC	3 cut(s)	22, 106, 503
Lsp1109I	GCAGC	1 cut(s)	341
LweI	GCATC	3 cut(s)	127, 341, 488
MaeI	CTAG	2 cut(s)	167, 320
MaeII	ACGT	2 cut(s)	273, 436
MaeIII	GTNAC	1 cut(s)	192
MalI	GATC	1 cut(s)	341
MboI	GATC	1 cut(s)	339
MboII	GAAGA	7 cut(s)	8, 86, 89, 267, 270, 271, 274
MhlI	GDGCHC	1 cut(s)	461
MlsI	TGGCCA	1 cut(s)	543
MluCI	AATT	2 cut(s)	126, 411
MluNI	TGGCCA	1 cut(s)	543
Mly113I	GGCGCC	1 cut(s)	516
MnlI	CCTC	7 cut(s)	24, 36, 37, 40, 237, 238, 302
Mox20I	TGGCCA	1 cut(s)	543
MroXI	GAANNNNTTC	2 cut(s)	373, 611
MscI	TGGCCA	1 cut(s)	543
MseI	TTAA	1 cut(s)	432
Msp20I	TGGCCA	1 cut(s)	543
MspI	CCGG	1 cut(s)	576
MspR9I	CCNGG	1 cut(s)	577
Mva1269I	GAATGC	1 cut(s)	267
MwoI	GCNNNNNNNGC	1 cut(s)	137
NarI	GGCGCC	1 cut(s)	516
NciI	CCSGG	1 cut(s)	577
NdeII	GATC	1 cut(s)	339
NlaIII	CATG	3 cut(s)	89, 210, 620
NlaIV	GGNNCC	2 cut(s)	24, 517
NmuCI	GTSAC	1 cut(s)	192
NspI	RCATGY	1 cut(s)	89
PciI	ACATGT	1 cut(s)	85
PctI	GAATGC	1 cut(s)	267
PdmI	GAANNNNTTC	2 cut(s)	373, 611
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	331
PluTI	GGCGCC	1 cut(s)	519
PscI	ACATGT	1 cut(s)	85
PspN4I	GGNNCC	2 cut(s)	24, 517
PspPI	GGNCC	1 cut(s)	578
SaqAI	TTAA	1 cut(s)	432
SatI	GCNGC	1 cut(s)	330
Sau3AI	GATC	1 cut(s)	339
Sau96I	GGNCC	1 cut(s)	578
ScrFI	CCNGG	1 cut(s)	577
SduI	GDGCHC	1 cut(s)	461
SetI	ASST	9 cut(s)	16, 230, 253, 276, 432, 439, 453, 473, 511
SfaNI	GCATC	3 cut(s)	127, 341, 488
SfoI	GGCGCC	1 cut(s)	517
SmlI	CTYRAG	1 cut(s)	602
SmoI	CTYRAG	1 cut(s)	602
Sse9I	AATT	2 cut(s)	126, 411
SsiI	CCGC	1 cut(s)	64
SspDI	GGCGCC	1 cut(s)	515
SspMI	CTAG	2 cut(s)	167, 320
StyD4I	CCNGG	1 cut(s)	575
TaaI	ACNGT	1 cut(s)	145
TaiI	ACGT	2 cut(s)	276, 439
TaqI	TCGA	1 cut(s)	497
TasI	AATT	2 cut(s)	126, 411
TfiI	GAWTC	1 cut(s)	163
Tru1I	TTAA	1 cut(s)	432
Tru9I	TTAA	1 cut(s)	432
TscAI	CASTG	4 cut(s)	76, 292, 489, 551
TseFI	GTSAC	1 cut(s)	192
TseI	GCWGC	1 cut(s)	329
Tsp45I	GTSAC	1 cut(s)	192
TspDTI	ATGAA	2 cut(s)	173, 423
TspGWI	ACGGA	1 cut(s)	175
TspRI	CASTG	4 cut(s)	76, 292, 489, 551
XbaI	TCTAGA	2 cut(s)	166, 319
XceI	RCATGY	1 cut(s)	89
XmnI	GAANNNNTTC	2 cut(s)	373, 611
XspI	CTAG	2 cut(s)	167, 320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.