Rorug05G0453200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0005495
Physical Location & Seq
Forward (+)
62652448 .. 62656051
3604 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0453200.1

Sequence Viewer

Length: 1251 bp
ATGTCAGGCCGCGGCAAGGGAGGCAAGGGATTGGGCAAAGGAGGAGCCAAGCGTCACAGGAAGGTTCTTCGGGATAACATCCAGGGCATCACCAAGCCCGCCATTCGCCGTTTGGCTCGCAGAGGCGGCGTCAAGCGTATCTCCGGTCTCATCTACGAAGAGACCCGAGGTGTCCTCAAGATCTTTCTCGAGAACGTCATCCGTGACGCCGTCACCTACACTGAGCACGCGAGGAGGAAGACCGTCACCGCCATGGATGTCGTCTATGCTTTGAAGAGGCAGGGAAGGACCCTTTACGGTTTCGGAGTTTACGACGGGGTCTACTCGCAACAGAATGAAGCGAGATTCATTTTGCATTTGGACTCCATTGAGATCATAAATGAAATCTGTGTTCGGATTATTTGTAGCTCATTTAGGGTTCATGTTGCGGTTGATTTGAGCAGAATGTGGGGGACTATCGATTCAGACATGAATACAGTGGGCACAATCCCAGGAAACAGGATAAAGGAAGCTGGAATCAGATGCCCAACTGCATATGACTTTGGACCTACTGTTCTGGTCATGGAATTCATAGGGAAGGCACGTTGTGCAGCACCTCGTTTGAAGGATGCCACATTGTCATTACACGAGCTACGAGAAGGATATAGGGAGATGATTATTTCTATGCGAATGCTATATCAGAAGGCCAAACTGGTGCATGCAGACCTCAGCGAATACAACGTACTTTATTTTGAAGGCCATTTGTACATGATTGATGTTTCTCAAGCAGTTGAGCTAAACGACCCTAGTGCGAAGGGATTTCTATGTAAAGATTGTCTCTATGTCTCTGTCCAATATAAAGTTGTGGCCAGGGGATCTATATCTGCAGAGGATGAAATTGCAGACTCTGTGTTTGTGCAGTCATTTATTGCAAGTAGTTTAGAAAATTTGAAGAATGTTGAGGCGGATGCAATACAGATAACTAGTGACAAGGACACTGAAGAGATGGACTATAAAACTATTACTGCACTGGAGCAGGCACTTTCTAGAGTCCAACTAGCTCCACTTGAGACCAATTCTGATGAAGAAAACTCAAGCGATTTAGATTCCTCATCTGGAATCAAGGCACAGAACAAGAAGATTGCGAGAAAATATTTCAAGAAGAAAGTCAAAGAAGTGAAGATGGAATCTCGGAAACATGAATTGCAAAAGCGCCCAAAGGCTGTAAAGAAAAGAAAGAATAAGCTGTCGGAACCTTGCAGGACCAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

416

Amino Acids

46.84

Weight (kDa)

9.45

Isoelectric Point (pI)

35.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CENP-T_C PF15511 45 - 96 5.3e-07 Centromere kinetochore component CENP-T histone fold
RIO1 PF01163 167 - 279 9e-35 RIO domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 321
AccII CGCG 2 cut(s) 12, 230
AciI CCGC 7 cut(s) 10, 12, 99, 126, 249, 428, 944
AclWI GGATC 1 cut(s) 862
AcoI YGGCCR 1 cut(s) 846
AcsI RAATTY 2 cut(s) 566, 925
AcuI CTGAAG 1 cut(s) 999
AcyI GRCGYC 2 cut(s) 129, 207
AdeI CACNNNGTG 1 cut(s) 587
AfaI GTAC 2 cut(s) 723, 746
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 5 cut(s) 274, 604, 734, 931, 1138
AhlI ACTAGT 1 cut(s) 962
AjnI CCWGG 3 cut(s) 81, 490, 848
AloI GAACNNNNNNTCC 2 cut(s) 537, 569
AluBI AGCT 6 cut(s) 408, 512, 631, 775, 1040, 1225
AluI AGCT 6 cut(s) 408, 512, 631, 775, 1040, 1225
Alw21I GWGCWC 1 cut(s) 228
Alw26I GTCTC 5 cut(s) 152, 155, 821, 829, 1043
AlwI GGATC 1 cut(s) 862
AlwNI CAGNNNCTG 1 cut(s) 887
Ama87I CYCGRG 2 cut(s) 165, 188
AoxI GGCC 4 cut(s) 7, 684, 736, 846
ApeKI GCWGC 1 cut(s) 590
ApoI RAATTY 2 cut(s) 566, 925
ArsI GACNNNNNNTTYG 2 cut(s) 875, 907
AspLEI GCGC 1 cut(s) 1194
AspS9I GGNCC 3 cut(s) 288, 545, 1242
AsuHPI GGTGA 3 cut(s) 82, 205, 238
AvaI CYCGRG 2 cut(s) 165, 188
AvaII GGWCC 3 cut(s) 288, 545, 1242
BaeGI GKGCMC 1 cut(s) 485
BalI TGGCCA 1 cut(s) 848
BauI CACGAG 1 cut(s) 626
BbsI GAAGAC 1 cut(s) 245
Bbv12I GWGCWC 1 cut(s) 228
BbvCI CCTCAGC 1 cut(s) 707
BbvI GCAGC 1 cut(s) 602
BccI CCATC 2 cut(s) 979, 1156
BceAI ACGGC 2 cut(s) 93, 194
BcgI CGANNNNNNTGC 2 cut(s) 770, 804
BciT130I CCWGG 3 cut(s) 83, 492, 850
BcoDI GTCTC 5 cut(s) 152, 155, 821, 829, 1043
BcuI ACTAGT 1 cut(s) 962
BfaI CTAG 4 cut(s) 786, 963, 1026, 1037
BfmI CTRYAG 1 cut(s) 864
BfoI RGCGCY 1 cut(s) 1195
BglII AGATCT 1 cut(s) 180
BisI GCNGC 4 cut(s) 10, 13, 127, 591
BlsI GCNGC 4 cut(s) 11, 14, 128, 592
Bme1390I CCNGG 3 cut(s) 83, 492, 850
Bme18I GGWCC 3 cut(s) 288, 545, 1242
BmeT110I CYCGRG 2 cut(s) 165, 188
BmgT120I GGNCC 3 cut(s) 288, 545, 1242
BmiI GGNNCC 3 cut(s) 46, 290, 1233
BmrFI CCNGG 3 cut(s) 83, 492, 850
BmsI GCATC 4 cut(s) 96, 512, 598, 937
BpiI GAAGAC 1 cut(s) 245
BplI GAGNNNNNCTC 2 cut(s) 159, 191
BpmI CTGGAG 1 cut(s) 1031
Bpu10I CCTNAGC 1 cut(s) 707
BpuEI CTTGAG 4 cut(s) 161, 747, 1057, 1067
Bsa29I ATCGAT 1 cut(s) 459
BsaBI GATNNNNATC 1 cut(s) 859
BsaHI GRCGYC 2 cut(s) 129, 207
BsaI GGTCTC 3 cut(s) 152, 155, 1043
BsaJI CCNNGG 6 cut(s) 10, 82, 166, 252, 490, 849
BsaWI WCCGGW 1 cut(s) 143
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse1I ACTGG 3 cut(s) 696, 1014, 1245
Bse8I GATNNNNATC 1 cut(s) 859
BseBI CCWGG 3 cut(s) 83, 492, 850
BseCI ATCGAT 1 cut(s) 459
BseDI CCNNGG 6 cut(s) 10, 82, 166, 252, 490, 849
BseGI GGATG 6 cut(s) 78, 198, 262, 613, 877, 952
BseJI GATNNNNATC 1 cut(s) 859
BseLI CCNNNNNNNGG 1 cut(s) 16
BseMII CTCAG 2 cut(s) 213, 721
BseNI ACTGG 3 cut(s) 696, 1014, 1245
BseRI GAGGAG 2 cut(s) 57, 247
BseSI GKGCMC 1 cut(s) 485
BseXI GCAGC 1 cut(s) 602
BsgI GTGCAG 3 cut(s) 609, 917, 990
Bsh1236I CGCG 2 cut(s) 12, 230
BshFI GGCC 4 cut(s) 9, 686, 738, 848
BshVI ATCGAT 1 cut(s) 459
BsiHKAI GWGCWC 1 cut(s) 228
BsiHKCI CYCGRG 2 cut(s) 165, 188
BsiSI CCGG 1 cut(s) 144
BslFI GGGAC 1 cut(s) 466
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 5 cut(s) 152, 155, 821, 829, 1043
BsmFI GGGAC 1 cut(s) 466
BsmI GAATGC 1 cut(s) 675
BsnI GGCC 4 cut(s) 9, 686, 738, 848
Bso31I GGTCTC 3 cut(s) 152, 155, 1043
BsoBI CYCGRG 2 cut(s) 165, 188
Bsp1286I GDGCHC 2 cut(s) 228, 485
Bsp1407I TGTACA 1 cut(s) 744
Bsp143I GATC 3 cut(s) 180, 372, 854
Bsp19I CCATGG 1 cut(s) 252
BspACI CCGC 7 cut(s) 10, 12, 99, 126, 249, 428, 944
BspANI GGCC 4 cut(s) 9, 686, 738, 848
BspCNI CTCAG 2 cut(s) 214, 720
BspDI ATCGAT 1 cut(s) 459
BspFNI CGCG 2 cut(s) 12, 230
BspLI GGNNCC 3 cut(s) 46, 290, 1233
BspMAI CTGCAG 1 cut(s) 868
BspPI GGATC 1 cut(s) 862
BspTNI GGTCTC 3 cut(s) 152, 155, 1043
BsrGI TGTACA 1 cut(s) 744
BsrI ACTGG 3 cut(s) 696, 1014, 1245
BssECI CCNNGG 6 cut(s) 10, 82, 166, 252, 490, 849
BssMI GATC 3 cut(s) 180, 372, 854
BssNI GRCGYC 2 cut(s) 129, 207
BssSI CACGAG 1 cut(s) 626
BssT1I CCWWGG 1 cut(s) 252
Bst2BI CACGAG 1 cut(s) 626
Bst2UI CCWGG 3 cut(s) 83, 492, 850
Bst4CI ACNGT 4 cut(s) 244, 299, 478, 553
Bst6I CTCTTC 3 cut(s) 153, 269, 975
BstACI GRCGYC 2 cut(s) 129, 207
BstAPI GCANNNNNTGC 1 cut(s) 587
BstAUI TGTACA 1 cut(s) 744
BstC8I GCNNGC 5 cut(s) 99, 118, 228, 699, 1017
BstDEI CTNAG 2 cut(s) 222, 707
BstDSI CCRYGG 2 cut(s) 10, 252
BstF5I GGATG 6 cut(s) 78, 198, 262, 613, 877, 952
BstFNI CGCG 2 cut(s) 12, 230
BstH2I RGCGCY 1 cut(s) 1195
BstHHI GCGC 1 cut(s) 1194
BstKTI GATC 3 cut(s) 183, 375, 857
BstMAI GTCTC 5 cut(s) 152, 155, 821, 829, 1043
BstMBI GATC 3 cut(s) 180, 372, 854
BstMWI GCNNNNNNNGC 3 cut(s) 21, 126, 587
BstNI CCWGG 3 cut(s) 83, 492, 850
BstNSI RCATGY 1 cut(s) 701
BstSCI CCNGG 3 cut(s) 81, 490, 848
BstSFI CTRYAG 1 cut(s) 864
BstSLI GKGCMC 1 cut(s) 485
BstUI CGCG 2 cut(s) 12, 230
BstV1I GCAGC 1 cut(s) 602
BstV2I GAAGAC 1 cut(s) 245
BstX2I RGATCY 2 cut(s) 180, 854
BstYI RGATCY 2 cut(s) 180, 854
Bsu15I ATCGAT 1 cut(s) 459
BsuRI GGCC 4 cut(s) 9, 686, 738, 848
BsuTUI ATCGAT 1 cut(s) 459
BtgI CCRYGG 2 cut(s) 10, 252
BtsCI GGATG 6 cut(s) 78, 198, 262, 613, 877, 952
BtsIMutI CAGTG 4 cut(s) 219, 483, 975, 1007
Cac8I GCNNGC 5 cut(s) 99, 118, 228, 699, 1017
CaiI CAGNNNCTG 1 cut(s) 887
CfoI GCGC 1 cut(s) 1194
Cfr13I GGNCC 3 cut(s) 288, 545, 1242
Cfr42I CCGCGG 1 cut(s) 13
ClaI ATCGAT 1 cut(s) 459
CseI GACGC 3 cut(s) 41, 118, 215
Csp6I GTAC 2 cut(s) 722, 745
CviAII CATG 7 cut(s) 253, 422, 469, 562, 698, 748, 1178
CviQI GTAC 2 cut(s) 722, 745
DdeI CTNAG 2 cut(s) 222, 707
DpnI GATC 3 cut(s) 182, 374, 856
DpnII GATC 3 cut(s) 180, 372, 854
DraIII CACNNNGTG 1 cut(s) 587
EaeI YGGCCR 1 cut(s) 846
Eam1104I CTCTTC 3 cut(s) 153, 269, 975
EarI CTCTTC 3 cut(s) 153, 269, 975
EciI GGCGGA 1 cut(s) 959
Eco130I CCWWGG 1 cut(s) 252
Eco31I GGTCTC 3 cut(s) 152, 155, 1043
Eco47I GGWCC 3 cut(s) 288, 545, 1242
Eco57I CTGAAG 1 cut(s) 999
Eco88I CYCGRG 2 cut(s) 165, 188
EcoO109I RGGNCCY 1 cut(s) 288
EcoRI GAATTC 1 cut(s) 566
EcoRII CCWGG 3 cut(s) 81, 490, 848
EcoT14I CCWWGG 1 cut(s) 252
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 7 cut(s) 256, 425, 472, 565, 701, 751, 1181
FaqI GGGAC 1 cut(s) 466
FatI CATG 7 cut(s) 252, 421, 468, 561, 697, 747, 1177
FauI CCCGC 1 cut(s) 106
FauNDI CATATG 1 cut(s) 535
FblI GTMKAC 1 cut(s) 321
Fnu4HI GCNGC 4 cut(s) 10, 13, 127, 591
FokI GGATG 6 cut(s) 65, 185, 269, 620, 884, 959
Fsp4HI GCNGC 4 cut(s) 10, 13, 127, 591
FspBI CTAG 4 cut(s) 786, 963, 1026, 1037
GlaI GCGC 1 cut(s) 1193
GluI GCNGC 4 cut(s) 10, 13, 127, 591
GsuI CTGGAG 1 cut(s) 1031
HaeII RGCGCY 1 cut(s) 1195
HaeIII GGCC 4 cut(s) 9, 686, 738, 848
HapII CCGG 1 cut(s) 144
HgaI GACGC 3 cut(s) 41, 118, 215
HhaI GCGC 1 cut(s) 1194
Hin1I GRCGYC 2 cut(s) 129, 207
Hin1II CATG 7 cut(s) 256, 425, 472, 565, 701, 751, 1181
Hin6I GCGC 1 cut(s) 1192
HinP1I GCGC 1 cut(s) 1192
HinfI GANTC 9 cut(s) 345, 362, 461, 516, 884, 1029, 1085, 1098, 1166
HpaII CCGG 1 cut(s) 144
HphI GGTGA 3 cut(s) 82, 205, 238
Hpy166II GTNNAC 2 cut(s) 310, 322
Hpy188I TCNGA 8 cut(s) 305, 396, 466, 521, 681, 1060, 1173, 1231
Hpy188III TCNNGA 7 cut(s) 71, 178, 188, 190, 1026, 1095, 1138
Hpy8I GTNNAC 2 cut(s) 310, 322
Hpy99I CGWCG 1 cut(s) 317
HpyAV CCTTC 8 cut(s) 55, 279, 571, 598, 632, 676, 728, 787
HpyCH4III ACNGT 4 cut(s) 244, 299, 478, 553
HpyCH4IV ACGT 3 cut(s) 195, 583, 720
HpyF10VI GCNNNNNNNGC 3 cut(s) 21, 126, 587
HpyF3I CTNAG 2 cut(s) 222, 707
HpySE526I ACGT 3 cut(s) 195, 583, 720
Hsp92I GRCGYC 2 cut(s) 129, 207
Hsp92II CATG 7 cut(s) 256, 425, 472, 565, 701, 751, 1181
HspAI GCGC 1 cut(s) 1192
KspI CCGCGG 1 cut(s) 13
Kzo9I GATC 3 cut(s) 180, 372, 854
LmnI GCTCC 3 cut(s) 44, 1012, 1045
Lsp1109I GCAGC 1 cut(s) 602
LweI GCATC 4 cut(s) 96, 512, 598, 937
MaeI CTAG 4 cut(s) 786, 963, 1026, 1037
MaeII ACGT 3 cut(s) 195, 583, 720
MaeIII GTNAC 5 cut(s) 53, 203, 211, 244, 965
MalI GATC 3 cut(s) 182, 374, 856
MboI GATC 3 cut(s) 180, 372, 854
MflI RGATCY 2 cut(s) 180, 854
MhlI GDGCHC 2 cut(s) 228, 485
MlsI TGGCCA 1 cut(s) 848
MluCI AATT 5 cut(s) 566, 876, 925, 1054, 1181
MluNI TGGCCA 1 cut(s) 848
MlyI GAGTC 3 cut(s) 356, 878, 1038
MmeI TCCRAC 2 cut(s) 1057, 1209
Mox20I TGGCCA 1 cut(s) 848
MscI TGGCCA 1 cut(s) 848
MslI CAYNNNNRTG 1 cut(s) 251
Msp20I TGGCCA 1 cut(s) 848
MspA1I CMGCKG 1 cut(s) 12
MspI CCGG 1 cut(s) 144
MspR9I CCNGG 3 cut(s) 83, 492, 850
Mva1269I GAATGC 1 cut(s) 675
MvaI CCWGG 3 cut(s) 83, 492, 850
MvnI CGCG 2 cut(s) 12, 230
MwoI GCNNNNNNNGC 3 cut(s) 21, 126, 587
NcoI CCATGG 1 cut(s) 252
NdeI CATATG 1 cut(s) 535
NdeII GATC 3 cut(s) 180, 372, 854
NlaIII CATG 7 cut(s) 256, 425, 472, 565, 701, 751, 1181
NlaIV GGNNCC 3 cut(s) 46, 290, 1233
NmuCI GTSAC 5 cut(s) 53, 203, 211, 244, 965
NspI RCATGY 1 cut(s) 701
PaeI GCATGC 1 cut(s) 701
PaeR7I CTCGAG 1 cut(s) 188
PcsI WCGNNNNNNNCGW 1 cut(s) 309
PctI GAATGC 1 cut(s) 675
PfeI GAWTC 6 cut(s) 345, 461, 516, 1085, 1098, 1166
PflFI GACNNNGTC 2 cut(s) 209, 317
PkrI GCNGC 4 cut(s) 11, 14, 128, 592
PleI GAGTC 3 cut(s) 356, 878, 1037
PpsI GAGTC 3 cut(s) 356, 878, 1037
PpuMI RGGWCCY 1 cut(s) 288
Psp5II RGGWCCY 1 cut(s) 288
Psp6I CCWGG 3 cut(s) 81, 490, 848
PspGI CCWGG 3 cut(s) 81, 490, 848
PspN4I GGNNCC 3 cut(s) 46, 290, 1233
PspPI GGNCC 3 cut(s) 288, 545, 1242
PspPPI RGGWCCY 1 cut(s) 288
PstI CTGCAG 1 cut(s) 868
PstNI CAGNNNCTG 1 cut(s) 887
PsuI RGATCY 2 cut(s) 180, 854
PsyI GACNNNGTC 2 cut(s) 209, 317
RsaI GTAC 2 cut(s) 723, 746
RsaNI GTAC 2 cut(s) 722, 745
RseI CAYNNNNRTG 1 cut(s) 251
SacII CCGCGG 1 cut(s) 13
SatI GCNGC 4 cut(s) 10, 13, 127, 591
Sau3AI GATC 3 cut(s) 180, 372, 854
Sau96I GGNCC 3 cut(s) 288, 545, 1242
SchI GAGTC 3 cut(s) 356, 878, 1038
ScrFI CCNGG 3 cut(s) 83, 492, 850
SduI GDGCHC 2 cut(s) 228, 485
SfaNI GCATC 4 cut(s) 96, 512, 598, 937
SfcI CTRYAG 1 cut(s) 864
Sfr274I CTCGAG 1 cut(s) 188
Sfr303I CCGCGG 1 cut(s) 13
SgrBI CCGCGG 1 cut(s) 13
SinI GGWCC 3 cut(s) 288, 545, 1242
SlaI CTCGAG 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 251
SmlI CTYRAG 5 cut(s) 176, 188, 762, 1046, 1072
SmoI CTYRAG 5 cut(s) 176, 188, 762, 1046, 1072
SpeI ACTAGT 1 cut(s) 962
SphI GCATGC 1 cut(s) 701
Sse9I AATT 5 cut(s) 566, 876, 925, 1054, 1181
SsiI CCGC 7 cut(s) 10, 12, 99, 126, 249, 428, 944
SspI AATATT 1 cut(s) 1133
SspMI CTAG 4 cut(s) 786, 963, 1026, 1037
StyD4I CCNGG 3 cut(s) 81, 490, 848
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 4 cut(s) 244, 299, 478, 553
TaiI ACGT 3 cut(s) 198, 586, 723
TaqI TCGA 2 cut(s) 189, 459
TasI AATT 5 cut(s) 566, 876, 925, 1054, 1181
TatI WGTACW 1 cut(s) 744
TauI GCSGC 3 cut(s) 12, 15, 129
TfiI GAWTC 6 cut(s) 345, 461, 516, 1085, 1098, 1166
TscAI CASTG 4 cut(s) 226, 483, 982, 1014
TseFI GTSAC 5 cut(s) 53, 203, 211, 244, 965
TseI GCWGC 1 cut(s) 590
Tsp45I GTSAC 5 cut(s) 53, 203, 211, 244, 965
TspDTI ATGAA 9 cut(s) 337, 351, 396, 410, 485, 559, 888, 1077, 1194
TspGWI ACGGA 1 cut(s) 191
TspRI CASTG 4 cut(s) 226, 483, 982, 1014
Tth111I GACNNNGTC 2 cut(s) 209, 317
VpaK11BI GGWCC 3 cut(s) 288, 545, 1242
XapI RAATTY 2 cut(s) 566, 925
XbaI TCTAGA 1 cut(s) 1025
XceI RCATGY 1 cut(s) 701
XcmI CCANNNNNNNNNTGG 1 cut(s) 109
XhoI CTCGAG 1 cut(s) 188
XmiI GTMKAC 1 cut(s) 321
XspI CTAG 4 cut(s) 786, 963, 1026, 1037
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.