Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0005495

Physical Location & Seq

Genomic Coordinates Forward (+)

20792976 .. 20796628

Gene Structure 3653 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1099100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGCGGGAGTAGCAATAATCCTAGATCTGTTGCGGAAAAAACCAAGTCCCAGTACAGTCCAAGCATTACACTCTGCTGGGTATTTTTCGGCCAAAGCCGCCGCTTCTGCCGCTGCTGCGTCTGTTGCCGCCGGTGCTCCTTATGCTTATAAGGCATTATTCGGTAATTTCAGGGTGCCGGTTGCCCATTGTGATGCTGGGACAGCATGGTCTGAAGATTATGTTTCTAATATACAAAGTGCATCTCAACGGATCTTTCAGAGTGACTCTCATAATTACAGTACCAAGGAATACAAAATTGAGTTAAAGCCTCTATTCTCGGCTTTTGAATTGAGGACTCTAACTATGACAACCTTGAGGTCATTTTTAATGTTCTTTTTACCTCTTTTGGAGCCTCGTACAAACTTGGAAGAGGATGATGATGACTTCCTGCCAGACAATGAAGAAAAGCAACCTATAGATTATGTTGTTCCTCTCAAAAAATCAGTAGTGCAGATTATTCGTGAGACTTCTGTTGCAACCACTAGACGGATTTTGGAACGAATTTGTGTCCATTATGTATCAGAGAGAATGGCATGGAAACTTCTCAAAGATGTTCCTAAGTCTGCCATGCGGAAAGCTGGAAGAAGATTGCCTACTTTAGTTTTCTTCTTTAGTGTTAGCAAAACAACTTTCAGAGGGCACTTTCTAGGTGTGGCAGCGTCATGGCTCATCCAAGTTGGCATTGAAGTCTACCGATATATTTCTCGTACAATAAAGTCTAGAGAAGAGGTTGATGACATCGATACGGCAGAACAAGTTAAGATTCTTGGGAAGAAGGTTACAGTTACTACTATCAGGTGTGGTGCATCACTAGTTTTTGCTTCCATTGGGGCTGGTATTGGTGCCTCCCTTATCCGCCCTTCATCTGGCCAGTGGATTGGCTGTCTTTTGGGGGATTTGGCAGGGCCTTTTATTGTAACAGCTTGCCTTGGGAGAGTTTACCATGGAGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

333

Amino Acids

36.64

Weight (kDa)

9.18

Isoelectric Point (pI)

39.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55610 AT5G55610
fragaria_vesca	FvH4_3g29460
malus_domestica	MD00G1099100.v1.1 MD11G1201600.v1.1
prunus_persica	Prupe.4G240000_v2.0.a1
pyrus_communis	pycom03g13850 pycom11g17410
rosa_chinensis	RchiOBHm_Chr5g0053951 RchiOBHm_Chr5g0077271
rosa_laevigata	RLG00000034912 RLG00000036679
rosa_multiflora	Rmu_sc0008383.1_g000005 Rmu_sc0023670.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004720 Rroxscaffold_1G00026690
rosa_rugosa	Rorug05G0284700 Rorug05G0453200
rosa_samantha	Rh5AG354000 Rh5AG508300 Rh5BG365800 Rh5BG529500 Rh5CG390600 Rh5CG554000 Rh5DG380700 Rh5DG542000
rosa_wichuraiana	Rw0G002080 Rw5G033370 Rw5G046930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
AasI	GACNNNNNNGTC	1 cut(s)	208
AccB1I	GGYRCC	2 cut(s)	175, 884
AccI	GTMKAC	1 cut(s)	732
AciI	CCGC	8 cut(s)	5, 34, 99, 102, 111, 129, 613, 898
AclWI	GGATC	1 cut(s)	260
AcoI	YGGCCR	2 cut(s)	90, 910
AcsI	RAATTY	1 cut(s)	543
AcuI	CTGAAG	1 cut(s)	234
AfaI	GTAC	4 cut(s)	55, 283, 400, 751
AfiI	CCNNNNNNNGG	2 cut(s)	528, 908
AgsI	TTSAA	2 cut(s)	329, 728
AhlI	ACTAGT	1 cut(s)	853
AluBI	AGCT	2 cut(s)	620, 965
AluI	AGCT	2 cut(s)	620, 965
Alw21I	GWGCWC	1 cut(s)	139
Alw26I	GTCTC	1 cut(s)	500
AlwI	GGATC	1 cut(s)	260
AoxI	GGCC	3 cut(s)	90, 910, 947
ApeKI	GCWGC	3 cut(s)	113, 116, 698
ApoI	RAATTY	1 cut(s)	543
AspS9I	GGNCC	1 cut(s)	947
BaeGI	GKGCMC	1 cut(s)	684
BalI	TGGCCA	1 cut(s)	912
BanI	GGYRCC	2 cut(s)	175, 884
BarI	GAAGNNNNNNTAC	2 cut(s)	619, 651
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	3 cut(s)	100, 103, 710
BceAI	ACGGC	1 cut(s)	804
BcgI	CGANNNNNNTGC	2 cut(s)	482, 516
BcoDI	GTCTC	1 cut(s)	500
BcuI	ACTAGT	1 cut(s)	853
BfaI	CTAG	5 cut(s)	23, 525, 689, 762, 854
BfmI	CTRYAG	1 cut(s)	456
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	7 cut(s)	99, 102, 111, 114, 117, 129, 699
BlsI	GCNGC	7 cut(s)	100, 103, 112, 115, 118, 130, 700
BmgT120I	GGNCC	1 cut(s)	947
BmiI	GGNNCC	3 cut(s)	177, 393, 886
BmrI	ACTGGG	1 cut(s)	45
BmsI	GCATC	3 cut(s)	184, 251, 857
BmuI	ACTGGG	1 cut(s)	45
BplI	GAGNNNNNCTC	2 cut(s)	253, 285
BpuEI	CTTGAG	1 cut(s)	376
Bsa29I	ATCGAT	1 cut(s)	783
BsaJI	CCNNGG	3 cut(s)	285, 970, 985
Bsc4I	CCNNNNNNNGG	2 cut(s)	528, 908
Bse118I	RCCGGY	2 cut(s)	131, 178
Bse1I	ACTGG	2 cut(s)	51, 913
BseCI	ATCGAT	1 cut(s)	783
BseDI	CCNNGG	3 cut(s)	285, 970, 985
BseGI	GGATG	2 cut(s)	421, 711
BseLI	CCNNNNNNNGG	2 cut(s)	528, 908
BseNI	ACTGG	2 cut(s)	51, 913
BseSI	GKGCMC	1 cut(s)	684
BseXI	GCAGC	3 cut(s)	100, 103, 710
BseYI	CCCAGC	2 cut(s)	77, 197
BsgI	GTGCAG	1 cut(s)	512
BshFI	GGCC	3 cut(s)	92, 912, 949
BshNI	GGYRCC	2 cut(s)	175, 884
BshVI	ATCGAT	1 cut(s)	783
BsiHKAI	GWGCWC	1 cut(s)	139
BsiSI	CCGG	2 cut(s)	132, 179
BslFI	GGGAC	2 cut(s)	33, 214
BslI	CCNNNNNNNGG	2 cut(s)	528, 908
BsmAI	GTCTC	1 cut(s)	500
BsmFI	GGGAC	2 cut(s)	33, 214
BsnI	GGCC	3 cut(s)	92, 912, 949
Bsp1286I	GDGCHC	2 cut(s)	139, 684
Bsp143I	GATC	2 cut(s)	25, 252
Bsp19I	CCATGG	1 cut(s)	985
BspACI	CCGC	8 cut(s)	5, 34, 99, 102, 111, 129, 613, 898
BspANI	GGCC	3 cut(s)	92, 912, 949
BspDI	ATCGAT	1 cut(s)	783
BspLI	GGNNCC	3 cut(s)	177, 393, 886
BspPI	GGATC	1 cut(s)	260
BspT107I	GGYRCC	2 cut(s)	175, 884
BsrFI	RCCGGY	2 cut(s)	131, 178
BsrI	ACTGG	2 cut(s)	51, 913
BssAI	RCCGGY	2 cut(s)	131, 178
BssECI	CCNNGG	3 cut(s)	285, 970, 985
BssMI	GATC	2 cut(s)	25, 252
BssT1I	CCWWGG	3 cut(s)	285, 970, 985
Bst4CI	ACNGT	3 cut(s)	58, 281, 826
Bst6I	CTCTTC	2 cut(s)	405, 762
BstC8I	GCNNGC	1 cut(s)	967
BstDEI	CTNAG	1 cut(s)	600
BstDSI	CCRYGG	1 cut(s)	985
BstF5I	GGATG	2 cut(s)	421, 711
BstKTI	GATC	2 cut(s)	28, 255
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	2 cut(s)	25, 252
BstSFI	CTRYAG	1 cut(s)	456
BstSLI	GKGCMC	1 cut(s)	684
BstV1I	GCAGC	3 cut(s)	100, 103, 710
BstX2I	RGATCY	2 cut(s)	25, 252
BstXI	CCANNNNNNTGG	1 cut(s)	920
BstYI	RGATCY	2 cut(s)	25, 252
Bsu15I	ATCGAT	1 cut(s)	783
BsuRI	GGCC	3 cut(s)	92, 912, 949
BsuTUI	ATCGAT	1 cut(s)	783
BtgI	CCRYGG	1 cut(s)	985
BtsCI	GGATG	2 cut(s)	421, 711
BtsIMutI	CAGTG	1 cut(s)	920
Cac8I	GCNNGC	1 cut(s)	967
Cfr10I	RCCGGY	2 cut(s)	131, 178
Cfr13I	GGNCC	1 cut(s)	947
ClaI	ATCGAT	1 cut(s)	783
CseI	GACGC	2 cut(s)	108, 690
Csp6I	GTAC	4 cut(s)	54, 282, 399, 750
CviAII	CATG	5 cut(s)	207, 576, 610, 705, 986
CviQI	GTAC	4 cut(s)	54, 282, 399, 750
DdeI	CTNAG	1 cut(s)	600
DpnI	GATC	2 cut(s)	27, 254
DpnII	GATC	2 cut(s)	25, 252
DrdI	GACNNNNNNGTC	1 cut(s)	208
DseDI	GACNNNNNNGTC	1 cut(s)	208
EaeI	YGGCCR	2 cut(s)	90, 910
Eam1104I	CTCTTC	2 cut(s)	405, 762
EarI	CTCTTC	2 cut(s)	405, 762
EciI	GGCGGA	1 cut(s)	887
Eco130I	CCWWGG	3 cut(s)	285, 970, 985
Eco57I	CTGAAG	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	947
EcoT14I	CCWWGG	3 cut(s)	285, 970, 985
ErhI	CCWWGG	3 cut(s)	285, 970, 985
FaeI	CATG	5 cut(s)	210, 579, 613, 708, 989
FaqI	GGGAC	2 cut(s)	33, 214
FatI	CATG	5 cut(s)	206, 575, 609, 704, 985
FblI	GTMKAC	1 cut(s)	732
Fnu4HI	GCNGC	7 cut(s)	99, 102, 111, 114, 117, 129, 699
FokI	GGATG	2 cut(s)	428, 698
Fsp4HI	GCNGC	7 cut(s)	99, 102, 111, 114, 117, 129, 699
FspBI	CTAG	5 cut(s)	23, 525, 689, 762, 854
GluI	GCNGC	7 cut(s)	99, 102, 111, 114, 117, 129, 699
GsaI	CCCAGC	2 cut(s)	81, 201
HaeIII	GGCC	3 cut(s)	92, 912, 949
HapII	CCGG	2 cut(s)	132, 179
HgaI	GACGC	2 cut(s)	108, 690
Hin1II	CATG	5 cut(s)	210, 579, 613, 708, 989
HinfI	GANTC	3 cut(s)	266, 337, 805
HpaII	CCGG	2 cut(s)	132, 179
Hpy166II	GTNNAC	2 cut(s)	733, 982
Hpy188I	TCNGA	4 cut(s)	214, 261, 565, 677
Hpy188III	TCNNGA	2 cut(s)	503, 762
Hpy8I	GTNNAC	2 cut(s)	733, 982
HpyAV	CCTTC	2 cut(s)	811, 912
HpyCH4III	ACNGT	3 cut(s)	58, 281, 826
HpyCH4V	TGCA	4 cut(s)	242, 493, 518, 848
HpyF3I	CTNAG	1 cut(s)	600
Hsp92II	CATG	5 cut(s)	210, 579, 613, 708, 989
Kzo9I	GATC	2 cut(s)	25, 252
LmnI	GCTCC	2 cut(s)	142, 391
Lsp1109I	GCAGC	3 cut(s)	100, 103, 710
LweI	GCATC	3 cut(s)	184, 251, 857
MaeI	CTAG	5 cut(s)	23, 525, 689, 762, 854
MaeIII	GTNAC	4 cut(s)	263, 820, 826, 958
MalI	GATC	2 cut(s)	27, 254
MboI	GATC	2 cut(s)	25, 252
MboII	GAAGA	8 cut(s)	227, 422, 455, 636, 639, 640, 779, 826
MflI	RGATCY	2 cut(s)	25, 252
MhlI	GDGCHC	2 cut(s)	139, 684
MlsI	TGGCCA	1 cut(s)	912
MluCI	AATT	5 cut(s)	166, 274, 297, 329, 543
MluNI	TGGCCA	1 cut(s)	912
MlyI	GAGTC	2 cut(s)	260, 331
Mox20I	TGGCCA	1 cut(s)	912
MscI	TGGCCA	1 cut(s)	912
MseI	TTAA	3 cut(s)	305, 368, 801
MslI	CAYNNNNRTG	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	912
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	2 cut(s)	132, 179
NcoI	CCATGG	1 cut(s)	985
NdeII	GATC	2 cut(s)	25, 252
NlaIII	CATG	5 cut(s)	210, 579, 613, 708, 989
NlaIV	GGNNCC	3 cut(s)	177, 393, 886
NmeAIII	GCCGAG	1 cut(s)	299
NmuCI	GTSAC	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	805
PkrI	GCNGC	7 cut(s)	100, 103, 112, 115, 118, 130, 700
PleI	GAGTC	2 cut(s)	260, 331
PpsI	GAGTC	2 cut(s)	260, 331
PsiI	TTATAA	1 cut(s)	150
PspFI	CCCAGC	2 cut(s)	77, 197
PspN4I	GGNNCC	3 cut(s)	177, 393, 886
PspPI	GGNCC	1 cut(s)	947
PsuI	RGATCY	2 cut(s)	25, 252
RsaI	GTAC	4 cut(s)	55, 283, 400, 751
RsaNI	GTAC	4 cut(s)	54, 282, 399, 750
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	3 cut(s)	305, 368, 801
SatI	GCNGC	7 cut(s)	99, 102, 111, 114, 117, 129, 699
Sau3AI	GATC	2 cut(s)	25, 252
Sau96I	GGNCC	1 cut(s)	947
SchI	GAGTC	2 cut(s)	260, 331
SduI	GDGCHC	2 cut(s)	139, 684
SfaNI	GCATC	3 cut(s)	184, 251, 857
SfcI	CTRYAG	1 cut(s)	456
SgrAI	CRCCGGYG	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
SpeI	ACTAGT	1 cut(s)	853
Sse9I	AATT	5 cut(s)	166, 274, 297, 329, 543
SsiI	CCGC	8 cut(s)	5, 34, 99, 102, 111, 129, 613, 898
SspMI	CTAG	5 cut(s)	23, 525, 689, 762, 854
StyI	CCWWGG	3 cut(s)	285, 970, 985
TaaI	ACNGT	3 cut(s)	58, 281, 826
TaqI	TCGA	1 cut(s)	783
TasI	AATT	5 cut(s)	166, 274, 297, 329, 543
TatI	WGTACW	1 cut(s)	53
TauI	GCSGC	4 cut(s)	101, 104, 113, 131
TfiI	GAWTC	1 cut(s)	805
Tru1I	TTAA	3 cut(s)	305, 368, 801
Tru9I	TTAA	3 cut(s)	305, 368, 801
TscAI	CASTG	1 cut(s)	920
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	3 cut(s)	113, 116, 698
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	2 cut(s)	456, 894
TspGWI	ACGGA	2 cut(s)	265, 544
TspRI	CASTG	1 cut(s)	920
XapI	RAATTY	1 cut(s)	543
XbaI	TCTAGA	1 cut(s)	761
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	732
XspI	CTAG	5 cut(s)	23, 525, 689, 762, 854

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.