Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005495

Physical Location & Seq

Genomic Coordinates Reverse (-)

57965710 .. 57968486

Gene Structure 2777 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG380700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

ATGGCGGGAATAGCTATAGTCTTAGATCTGCTAAGAAAAAACCCAAGTCTTACAACCCAAAGCCTTCACGCTTCTGGGTTCTTCTCGGCGAAAGCAGCTGCTTCCGCCGCCGCCGCTGGAGCTCCTTACGTTTACAAGTCCTTGTTCGGTAATTTTAGGGGACCAGTTGCCTATTGTGATGCTGGAGCAACATTGTCTGAAGATTACATCTCTAATTTACGAAGTGCATCCTTAAAAATATTTCAGAATGAATCTGTGAATTACGGTACCAAGGAATACACAATCGAGTTAAAGCCACTCTTCTCAGCTTTCGAATTGAGAGCTCTAACTTTGACGACTGTGAGGTCATTTTTACTGTACTTTTTACCTCTTCTGGAGCCTCGTGCAAACTTGGAAGAGGACGATGATGACTTCCTGCAGGACACTGAAGAAGAACAACGTATAGATTATGTTGTTCCATTAAAAAAATCATTAAAGCAGATTGCTCGTGAGACTACTGTCACAACCACTAGACGGATTCTAGAAAGAATTTCTGTTTATTATGTGTCACAGAGAATGGCATGGAAACTTCTGAAAGATCTCCCAAAGTCTGCCGTGAGGAAAGCTGGAAGAAGAATGCCAACTTATGTTTTCTTCTTCAGTGTTGGCAAAACGACTATGAGAGGACACTTTCTAGGTGTTGCAGCATCTTGGATCATCTCAGTTGGCATTGATATCTACCGAACTTTTAAAGGAATGATAAACTCTAAAGAAGAGGTTGATGAAATCGATACACCACAAAAGCTTAAACTTCTTGGGAATAAGGTTTGGGGCACTACTATCAGGTGTGGTGCATCACTGATTTTTGCTTCAATTGGGGCGGGTATTGGTGCCACTCTTTTTCGCCCTTCAACTGGCCAGTGGGTTGGTTGTGTTCTGGGAGATGTGGCTGGGCCTATTATTGTCTCATATTGCCTTGAGAGATCTTTCCATATAGAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

327

Amino Acids

36.29

Weight (kDa)

9.12

Isoelectric Point (pI)

31.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55610 AT5G55610
fragaria_vesca	FvH4_3g29460
malus_domestica	MD00G1099100.v1.1 MD11G1201600.v1.1
prunus_persica	Prupe.4G240000_v2.0.a1
pyrus_communis	pycom03g13850 pycom11g17410
rosa_chinensis	RchiOBHm_Chr5g0053951 RchiOBHm_Chr5g0077271
rosa_laevigata	RLG00000034912 RLG00000036679
rosa_multiflora	Rmu_sc0008383.1_g000005 Rmu_sc0023670.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004720 Rroxscaffold_1G00026690
rosa_rugosa	Rorug05G0284700 Rorug05G0453200
rosa_samantha	Rh5AG354000 Rh5AG508300 Rh5BG365800 Rh5BG529500 Rh5CG390600 Rh5CG554000 Rh5DG380700 Rh5DG542000
rosa_wichuraiana	Rw0G002080 Rw5G033370 Rw5G046930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	343
Acc65I	GGTACC	1 cut(s)	266
AccB1I	GGYRCC	2 cut(s)	266, 869
AciI	CCGC	6 cut(s)	5, 105, 108, 111, 114, 860
AclWI	GGATC	1 cut(s)	701
AcoI	YGGCCR	1 cut(s)	895
AcsI	RAATTY	1 cut(s)	528
AcuI	CTGAAG	3 cut(s)	219, 447, 622
AfaI	GTAC	2 cut(s)	268, 359
AfiI	CCNNNNNNNGG	2 cut(s)	513, 893
AgsI	TTSAA	2 cut(s)	852, 891
AluBI	AGCT	7 cut(s)	14, 98, 122, 308, 323, 605, 784
AluI	AGCT	7 cut(s)	14, 98, 122, 308, 323, 605, 784
Alw21I	GWGCWC	2 cut(s)	124, 325
Alw26I	GTCTC	2 cut(s)	485, 949
AlwI	GGATC	1 cut(s)	701
AoxI	GGCC	2 cut(s)	895, 932
ApeKI	GCWGC	3 cut(s)	95, 98, 683
ApoI	RAATTY	1 cut(s)	528
Asp718I	GGTACC	1 cut(s)	266
AspS9I	GGNCC	2 cut(s)	161, 932
AsuII	TTCGAA	1 cut(s)	312
AvaII	GGWCC	1 cut(s)	161
BaeGI	GKGCMC	1 cut(s)	815
BalI	TGGCCA	1 cut(s)	897
BanI	GGYRCC	2 cut(s)	266, 869
BanII	GRGCYC	2 cut(s)	124, 325
BauI	CACGAG	2 cut(s)	381, 486
Bbv12I	GWGCWC	2 cut(s)	124, 325
BbvI	GCAGC	3 cut(s)	85, 107, 695
BceAI	ACGGC	1 cut(s)	578
BcgI	CGANNNNNNTGC	2 cut(s)	467, 501
BcoDI	GTCTC	2 cut(s)	485, 949
BfaI	CTAG	3 cut(s)	510, 521, 674
BfmI	CTRYAG	2 cut(s)	15, 416
BglII	AGATCT	3 cut(s)	25, 577, 962
BisI	GCNGC	6 cut(s)	96, 99, 108, 111, 114, 684
BlsI	GCNGC	6 cut(s)	97, 100, 109, 112, 115, 685
Bme18I	GGWCC	1 cut(s)	161
BmgT120I	GGNCC	2 cut(s)	161, 932
BmiI	GGNNCC	4 cut(s)	162, 268, 378, 871
BmsI	GCATC	4 cut(s)	169, 236, 695, 842
BoxI	GACNNNNGTC	1 cut(s)	497
BpmI	CTGGAG	3 cut(s)	138, 204, 395
Bpu14I	TTCGAA	1 cut(s)	312
BpuEI	CTTGAG	1 cut(s)	977
Bsa29I	ATCGAT	1 cut(s)	768
BsaJI	CCNNGG	1 cut(s)	270
Bsc4I	CCNNNNNNNGG	2 cut(s)	513, 893
Bse1I	ACTGG	3 cut(s)	164, 898, 898
BseCI	ATCGAT	1 cut(s)	768
BseDI	CCNNGG	1 cut(s)	270
BseGI	GGATG	1 cut(s)	227
BseLI	CCNNNNNNNGG	2 cut(s)	513, 893
BseMII	CTCAG	2 cut(s)	318, 714
BseNI	ACTGG	3 cut(s)	164, 898, 898
BseSI	GKGCMC	1 cut(s)	815
BseXI	GCAGC	3 cut(s)	85, 107, 695
BseYI	CCCAGC	1 cut(s)	929
BshFI	GGCC	2 cut(s)	897, 934
BshNI	GGYRCC	2 cut(s)	266, 869
BshVI	ATCGAT	1 cut(s)	768
BsiHKAI	GWGCWC	2 cut(s)	124, 325
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	2 cut(s)	513, 893
BsmAI	GTCTC	2 cut(s)	485, 949
BsmFI	GGGAC	1 cut(s)	174
BsmI	GAATGC	1 cut(s)	621
BsnI	GGCC	2 cut(s)	897, 934
Bsp119I	TTCGAA	1 cut(s)	312
Bsp1286I	GDGCHC	3 cut(s)	124, 325, 815
Bsp143I	GATC	4 cut(s)	25, 577, 693, 962
BspACI	CCGC	6 cut(s)	5, 105, 108, 111, 114, 860
BspANI	GGCC	2 cut(s)	897, 934
BspCNI	CTCAG	2 cut(s)	317, 713
BspDI	ATCGAT	1 cut(s)	768
BspLI	GGNNCC	4 cut(s)	162, 268, 378, 871
BspMAI	CTGCAG	1 cut(s)	420
BspPI	GGATC	1 cut(s)	701
BspT104I	TTCGAA	1 cut(s)	312
BspT107I	GGYRCC	2 cut(s)	266, 869
BsrI	ACTGG	3 cut(s)	164, 898, 898
BssECI	CCNNGG	1 cut(s)	270
BssMI	GATC	4 cut(s)	25, 577, 693, 962
BssSI	CACGAG	2 cut(s)	381, 486
BssT1I	CCWWGG	1 cut(s)	270
Bst2BI	CACGAG	2 cut(s)	381, 486
Bst4CI	ACNGT	4 cut(s)	266, 340, 357, 499
Bst6I	CTCTTC	4 cut(s)	305, 375, 390, 747
BstBI	TTCGAA	1 cut(s)	312
BstDEI	CTNAG	4 cut(s)	22, 32, 304, 700
BstF5I	GGATG	1 cut(s)	227
BstKTI	GATC	4 cut(s)	28, 580, 696, 965
BstMAI	GTCTC	2 cut(s)	485, 949
BstMBI	GATC	4 cut(s)	25, 577, 693, 962
BstMWI	GCNNNNNNNGC	6 cut(s)	11, 95, 104, 107, 113, 119
BstPAI	GACNNNNGTC	1 cut(s)	497
BstSFI	CTRYAG	2 cut(s)	15, 416
BstSLI	GKGCMC	1 cut(s)	815
BstV1I	GCAGC	3 cut(s)	85, 107, 695
BstX2I	RGATCY	3 cut(s)	25, 577, 962
BstXI	CCANNNNNNTGG	1 cut(s)	905
BstYI	RGATCY	3 cut(s)	25, 577, 962
Bsu15I	ATCGAT	1 cut(s)	768
BsuRI	GGCC	2 cut(s)	897, 934
BsuTUI	ATCGAT	1 cut(s)	768
BtsCI	GGATG	1 cut(s)	227
BtsIMutI	CAGTG	4 cut(s)	423, 646, 836, 905
Cfr13I	GGNCC	2 cut(s)	161, 932
ClaI	ATCGAT	1 cut(s)	768
Csp6I	GTAC	2 cut(s)	267, 358
CviAII	CATG	1 cut(s)	561
CviQI	GTAC	2 cut(s)	267, 358
DdeI	CTNAG	4 cut(s)	22, 32, 304, 700
DpnI	GATC	4 cut(s)	27, 579, 695, 964
DpnII	GATC	4 cut(s)	25, 577, 693, 962
DraI	TTTAAA	1 cut(s)	730
DrdI	GACNNNNNNGTC	1 cut(s)	343
DseDI	GACNNNNNNGTC	1 cut(s)	343
EaeI	YGGCCR	1 cut(s)	895
Eam1104I	CTCTTC	4 cut(s)	305, 375, 390, 747
EarI	CTCTTC	4 cut(s)	305, 375, 390, 747
EciI	GGCGGA	1 cut(s)	94
Ecl136II	GAGCTC	2 cut(s)	122, 323
Eco130I	CCWWGG	1 cut(s)	270
Eco24I	GRGCYC	2 cut(s)	124, 325
Eco32I	GATATC	1 cut(s)	715
Eco47I	GGWCC	1 cut(s)	161
Eco53kI	GAGCTC	2 cut(s)	122, 323
Eco57I	CTGAAG	3 cut(s)	219, 447, 622
EcoICRI	GAGCTC	2 cut(s)	122, 323
EcoRV	GATATC	1 cut(s)	715
EcoT14I	CCWWGG	1 cut(s)	270
EcoT38I	GRGCYC	2 cut(s)	124, 325
ErhI	CCWWGG	1 cut(s)	270
FaeI	CATG	1 cut(s)	564
FalI	AAGNNNNNCTT	2 cut(s)	284, 316
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	1 cut(s)	560
FauI	CCCGC	1 cut(s)	853
Fnu4HI	GCNGC	6 cut(s)	96, 99, 108, 111, 114, 684
FokI	GGATG	1 cut(s)	214
FriOI	GRGCYC	2 cut(s)	124, 325
Fsp4HI	GCNGC	6 cut(s)	96, 99, 108, 111, 114, 684
FspBI	CTAG	3 cut(s)	510, 521, 674
GluI	GCNGC	6 cut(s)	96, 99, 108, 111, 114, 684
GsaI	CCCAGC	1 cut(s)	933
GsuI	CTGGAG	3 cut(s)	138, 204, 395
HaeIII	GGCC	2 cut(s)	897, 934
Hin1II	CATG	1 cut(s)	564
HindIII	AAGCTT	1 cut(s)	782
HinfI	GANTC	2 cut(s)	251, 517
Hpy166II	GTNNAC	1 cut(s)	133
Hpy188I	TCNGA	3 cut(s)	199, 246, 573
Hpy188III	TCNNGA	3 cut(s)	374, 488, 521
Hpy8I	GTNNAC	1 cut(s)	133
HpyAV	CCTTC	2 cut(s)	74, 897
HpyCH4III	ACNGT	4 cut(s)	266, 340, 357, 499
HpyCH4IV	ACGT	2 cut(s)	129, 439
HpyCH4V	TGCA	5 cut(s)	227, 386, 418, 683, 833
HpyF10VI	GCNNNNNNNGC	6 cut(s)	11, 95, 104, 107, 113, 119
HpyF3I	CTNAG	4 cut(s)	22, 32, 304, 700
HpySE526I	ACGT	2 cut(s)	129, 439
Hsp92II	CATG	1 cut(s)	564
KpnI	GGTACC	1 cut(s)	270
Kzo9I	GATC	4 cut(s)	25, 577, 693, 962
LmnI	GCTCC	4 cut(s)	119, 127, 185, 376
Lsp1109I	GCAGC	3 cut(s)	85, 107, 695
LweI	GCATC	4 cut(s)	169, 236, 695, 842
MaeI	CTAG	3 cut(s)	510, 521, 674
MaeII	ACGT	2 cut(s)	129, 439
MaeIII	GTNAC	2 cut(s)	499, 546
MalI	GATC	4 cut(s)	27, 579, 695, 964
MboI	GATC	4 cut(s)	25, 577, 693, 962
MfeI	CAATTG	1 cut(s)	852
MflI	RGATCY	3 cut(s)	25, 577, 962
MhlI	GDGCHC	3 cut(s)	124, 325, 815
MlsI	TGGCCA	1 cut(s)	897
MluCI	AATT	6 cut(s)	151, 214, 259, 314, 528, 852
MluNI	TGGCCA	1 cut(s)	897
MnlI	CCTC	7 cut(s)	336, 378, 390, 391, 591, 656, 748
Mox20I	TGGCCA	1 cut(s)	897
MscI	TGGCCA	1 cut(s)	897
MseI	TTAA	6 cut(s)	233, 290, 461, 473, 729, 786
Msp20I	TGGCCA	1 cut(s)	897
MspA1I	CMGCKG	2 cut(s)	98, 116
MunI	CAATTG	1 cut(s)	852
Mva1269I	GAATGC	1 cut(s)	621
MwoI	GCNNNNNNNGC	6 cut(s)	11, 95, 104, 107, 113, 119
NdeII	GATC	4 cut(s)	25, 577, 693, 962
NlaIII	CATG	1 cut(s)	564
NlaIV	GGNNCC	4 cut(s)	162, 268, 378, 871
NmeAIII	GCCGAG	1 cut(s)	65
NmuCI	GTSAC	2 cut(s)	499, 546
NspV	TTCGAA	1 cut(s)	312
PctI	GAATGC	1 cut(s)	621
PfeI	GAWTC	2 cut(s)	251, 517
PkrI	GCNGC	6 cut(s)	97, 100, 109, 112, 115, 685
PshAI	GACNNNNGTC	1 cut(s)	497
Psp124BI	GAGCTC	2 cut(s)	124, 325
PspFI	CCCAGC	1 cut(s)	929
PspN4I	GGNNCC	4 cut(s)	162, 268, 378, 871
PspPI	GGNCC	2 cut(s)	161, 932
PstI	CTGCAG	1 cut(s)	420
PsuI	RGATCY	3 cut(s)	25, 577, 962
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	268, 359
RsaNI	GTAC	2 cut(s)	267, 358
SacI	GAGCTC	2 cut(s)	124, 325
SaqAI	TTAA	6 cut(s)	233, 290, 461, 473, 729, 786
SatI	GCNGC	6 cut(s)	96, 99, 108, 111, 114, 684
Sau3AI	GATC	4 cut(s)	25, 577, 693, 962
Sau96I	GGNCC	2 cut(s)	161, 932
SbfI	CCTGCAGG	1 cut(s)	420
SdaI	CCTGCAGG	1 cut(s)	420
SduI	GDGCHC	3 cut(s)	124, 325, 815
SfaNI	GCATC	4 cut(s)	169, 236, 695, 842
SfcI	CTRYAG	2 cut(s)	15, 416
SfuI	TTCGAA	1 cut(s)	312
SinI	GGWCC	1 cut(s)	161
SmlI	CTYRAG	1 cut(s)	956
SmoI	CTYRAG	1 cut(s)	956
Sse8387I	CCTGCAGG	1 cut(s)	420
Sse9I	AATT	6 cut(s)	151, 214, 259, 314, 528, 852
SsiI	CCGC	6 cut(s)	5, 105, 108, 111, 114, 860
SspI	AATATT	1 cut(s)	240
SspMI	CTAG	3 cut(s)	510, 521, 674
SstI	GAGCTC	2 cut(s)	124, 325
StyI	CCWWGG	1 cut(s)	270
TaaI	ACNGT	4 cut(s)	266, 340, 357, 499
TaiI	ACGT	2 cut(s)	132, 442
TaqI	TCGA	3 cut(s)	285, 312, 768
TasI	AATT	6 cut(s)	151, 214, 259, 314, 528, 852
TatI	WGTACW	1 cut(s)	357
TauI	GCSGC	3 cut(s)	110, 113, 116
TfiI	GAWTC	2 cut(s)	251, 517
Tru1I	TTAA	6 cut(s)	233, 290, 461, 473, 729, 786
Tru9I	TTAA	6 cut(s)	233, 290, 461, 473, 729, 786
TscAI	CASTG	4 cut(s)	430, 646, 843, 905
TseFI	GTSAC	2 cut(s)	499, 546
TseI	GCWGC	3 cut(s)	95, 98, 683
Tsp45I	GTSAC	2 cut(s)	499, 546
TspDTI	ATGAA	2 cut(s)	264, 777
TspGWI	ACGGA	1 cut(s)	529
TspRI	CASTG	4 cut(s)	430, 646, 843, 905
VpaK11BI	GGWCC	1 cut(s)	161
XapI	RAATTY	1 cut(s)	528
XbaI	TCTAGA	1 cut(s)	520
XspI	CTAG	3 cut(s)	510, 521, 674

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.