Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0005495

Physical Location & Seq

Genomic Coordinates Reverse (-)

83379372 .. 83380435

Gene Structure 1064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG542000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCGGGAATAGCAATTGTCTTAGATCTGCTGAGAAAAAACCCAAGTCTTACAACCCAAAGCCTACACGCTTCTGGGTTTTTCTCCGCTAAAGCAGCCGCCACCGCCGCCTCCGTCACCGCTGGAGCTCCTTACGTTTACAAGTCCTTCTTCAGTAATTTTAGGGTTCCAGTTGCCTATTGTGATGCTGGAGCAACATTGTCTGAAGATTACACCTCTAATGTACGAAGTGCATCCTTAAAAATATTTCAGAATGAATCTGTGAATTTCGGTACCAAGGAATACACAATCGAGTTAAAGCCTCTATTCTCAGCTTTCGAATTGAGAGCTCTAACTCTGACGACTCTGAGGTCATTTTTGATGTTCTACTTACCTCTTCTGGAGCCTCGTAGAAACTTGCAAGGGGACGATGATGACTTCCTGCGGGACACTGAAGAAGAACAACATGTAGATTATGTTGCTCCATTCAAAAAATCACTAAAGAAAATTGCTCGTGATACTACTGTCTCAACCACTAAACGGATTCTGGAAAGAATTTCTGTTCATTATGTGTCACAGAGAATGGCATGGAAATTTCTGAAAGATACCTCAAAGTCTGCGATGAGGAAAGCTGGAAGAAGAATGCCAACTTACGTTTTCTTCTTCAGTGTTAGCAAGATGACTATGAGAGGACACTTTCTAGATGTTGCAGCATCTTGGATCATCTCAGTTAGCATTGATATCTACCGAACTTTTTCTGGAATGACAAACTCTAAAGAAGTGGTTGATGAAATTGATACACCACAAAAGCTTAAACGTCTTGGGAATAAGGTTTGGGGCACTACTATCAGGTGTGGTGCATCACTGATTTTTGCTTCGATTGGGGCAGGTATTGGTGCCACTCTTTTTCGCCCTTCAACTGGCCAGTGGATTGGTCATATTCTGGGAGATGTGGCCGGGCCTATTATTGTCTCATATTGCCTTGAGAAGTCTTTCCATGTAAAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

329

Amino Acids

36.72

Weight (kDa)

9.61

Isoelectric Point (pI)

32.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55610 AT5G55610
fragaria_vesca	FvH4_3g29460
malus_domestica	MD00G1099100.v1.1 MD11G1201600.v1.1
prunus_persica	Prupe.4G240000_v2.0.a1
pyrus_communis	pycom03g13850 pycom11g17410
rosa_chinensis	RchiOBHm_Chr5g0053951 RchiOBHm_Chr5g0077271
rosa_laevigata	RLG00000034912 RLG00000036679
rosa_multiflora	Rmu_sc0008383.1_g000005 Rmu_sc0023670.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004720 Rroxscaffold_1G00026690
rosa_rugosa	Rorug05G0284700 Rorug05G0453200
rosa_samantha	Rh5AG354000 Rh5AG508300 Rh5BG365800 Rh5BG529500 Rh5CG390600 Rh5CG554000 Rh5DG380700 Rh5DG542000
rosa_wichuraiana	Rw0G002080 Rw5G033370 Rw5G046930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	349
Acc36I	ACCTGC	1 cut(s)	857
Acc65I	GGTACC	1 cut(s)	272
AccB1I	GGYRCC	2 cut(s)	272, 875
AciI	CCGC	7 cut(s)	5, 87, 99, 105, 108, 120, 424
AclWI	GGATC	1 cut(s)	707
AcoI	YGGCCR	2 cut(s)	901, 933
AcsI	RAATTY	3 cut(s)	265, 534, 572
AcuI	CTGAAG	4 cut(s)	136, 225, 453, 628
AfaI	GTAC	2 cut(s)	225, 274
AfiI	CCNNNNNNNGG	2 cut(s)	519, 899
AflIII	ACRYGT	1 cut(s)	445
AgsI	TTSAA	2 cut(s)	469, 897
AluBI	AGCT	5 cut(s)	128, 314, 329, 611, 790
AluI	AGCT	5 cut(s)	128, 314, 329, 611, 790
Alw21I	GWGCWC	2 cut(s)	130, 331
Alw26I	GTCTC	2 cut(s)	511, 955
AlwI	GGATC	1 cut(s)	707
AoxI	GGCC	3 cut(s)	901, 933, 938
ApeKI	GCWGC	2 cut(s)	95, 689
ApoI	RAATTY	3 cut(s)	265, 534, 572
Asp700I	GAANNNNTTC	2 cut(s)	733, 971
Asp718I	GGTACC	1 cut(s)	272
AspS9I	GGNCC	1 cut(s)	938
AsuC2I	CCSGG	1 cut(s)	937
AsuHPI	GGTGA	1 cut(s)	109
AsuII	TTCGAA	1 cut(s)	318
BaeGI	GKGCMC	1 cut(s)	821
BaeI	ACNNNNGTAYC	2 cut(s)	489, 522
BalI	TGGCCA	1 cut(s)	903
BanI	GGYRCC	2 cut(s)	272, 875
BanII	GRGCYC	2 cut(s)	130, 331
BauI	CACGAG	1 cut(s)	492
Bbv12I	GWGCWC	2 cut(s)	130, 331
BbvI	GCAGC	2 cut(s)	107, 701
BcnI	CCSGG	1 cut(s)	937
BcoDI	GTCTC	2 cut(s)	511, 955
BfaI	CTAG	1 cut(s)	680
BfuAI	ACCTGC	1 cut(s)	857
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	4 cut(s)	96, 99, 108, 690
BlsI	GCNGC	4 cut(s)	97, 100, 109, 691
Bme1390I	CCNGG	1 cut(s)	937
BmgT120I	GGNCC	1 cut(s)	938
BmiI	GGNNCC	4 cut(s)	168, 274, 384, 877
BmrFI	CCNGG	1 cut(s)	937
BmsI	GCATC	4 cut(s)	175, 242, 701, 848
BpmI	CTGGAG	3 cut(s)	144, 210, 401
Bpu14I	TTCGAA	1 cut(s)	318
BpuEI	CTTGAG	1 cut(s)	983
BpuMI	CCSGG	1 cut(s)	937
BsaJI	CCNNGG	1 cut(s)	276
Bsc4I	CCNNNNNNNGG	2 cut(s)	519, 899
Bse1I	ACTGG	3 cut(s)	170, 904, 904
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	233
BseLI	CCNNNNNNNGG	2 cut(s)	519, 899
BseMII	CTCAG	4 cut(s)	23, 324, 338, 720
BseNI	ACTGG	3 cut(s)	170, 904, 904
BseSI	GKGCMC	1 cut(s)	821
BseXI	GCAGC	2 cut(s)	107, 701
BshFI	GGCC	3 cut(s)	903, 935, 940
BshNI	GGYRCC	2 cut(s)	272, 875
BsiHKAI	GWGCWC	2 cut(s)	130, 331
BsiSI	CCGG	1 cut(s)	936
BslFI	GGGAC	2 cut(s)	419, 440
BslI	CCNNNNNNNGG	2 cut(s)	519, 899
BsmAI	GTCTC	2 cut(s)	511, 955
BsmFI	GGGAC	2 cut(s)	419, 440
BsmI	GAATGC	1 cut(s)	627
BsnI	GGCC	3 cut(s)	903, 935, 940
Bsp119I	TTCGAA	1 cut(s)	318
Bsp1286I	GDGCHC	3 cut(s)	130, 331, 821
Bsp143I	GATC	2 cut(s)	25, 699
BspACI	CCGC	7 cut(s)	5, 87, 99, 105, 108, 120, 424
BspANI	GGCC	3 cut(s)	903, 935, 940
BspCNI	CTCAG	4 cut(s)	24, 323, 339, 719
BspLI	GGNNCC	4 cut(s)	168, 274, 384, 877
BspMI	ACCTGC	1 cut(s)	857
BspPI	GGATC	1 cut(s)	707
BspT104I	TTCGAA	1 cut(s)	318
BspT107I	GGYRCC	2 cut(s)	272, 875
BsrI	ACTGG	3 cut(s)	170, 904, 904
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	2 cut(s)	25, 699
BssSI	CACGAG	1 cut(s)	492
BssT1I	CCWWGG	1 cut(s)	276
Bst2BI	CACGAG	1 cut(s)	492
Bst4CI	ACNGT	1 cut(s)	505
Bst6I	CTCTTC	1 cut(s)	381
BstBI	TTCGAA	1 cut(s)	318
BstDEI	CTNAG	5 cut(s)	22, 32, 310, 347, 706
BstF5I	GGATG	1 cut(s)	233
BstKTI	GATC	2 cut(s)	28, 702
BstMAI	GTCTC	2 cut(s)	511, 955
BstMBI	GATC	2 cut(s)	25, 699
BstMWI	GCNNNNNNNGC	4 cut(s)	11, 95, 104, 107
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	1 cut(s)	935
BstSLI	GKGCMC	1 cut(s)	821
BstV1I	GCAGC	2 cut(s)	107, 701
BstX2I	RGATCY	1 cut(s)	25
BstXI	CCANNNNNNTGG	1 cut(s)	911
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	3 cut(s)	903, 935, 940
BtgZI	GCGATG	1 cut(s)	614
BtsCI	GGATG	1 cut(s)	233
BtsIMutI	CAGTG	4 cut(s)	429, 652, 842, 911
BveI	ACCTGC	1 cut(s)	857
Cfr13I	GGNCC	1 cut(s)	938
Csp6I	GTAC	2 cut(s)	224, 273
CviAII	CATG	3 cut(s)	446, 567, 977
CviQI	GTAC	2 cut(s)	224, 273
DdeI	CTNAG	5 cut(s)	22, 32, 310, 347, 706
DpnI	GATC	2 cut(s)	27, 701
DpnII	GATC	2 cut(s)	25, 699
DrdI	GACNNNNNNGTC	1 cut(s)	349
DseDI	GACNNNNNNGTC	1 cut(s)	349
EaeI	YGGCCR	2 cut(s)	901, 933
Eam1104I	CTCTTC	1 cut(s)	381
EarI	CTCTTC	1 cut(s)	381
Ecl136II	GAGCTC	2 cut(s)	128, 329
Eco130I	CCWWGG	1 cut(s)	276
Eco24I	GRGCYC	2 cut(s)	130, 331
Eco32I	GATATC	1 cut(s)	721
Eco53kI	GAGCTC	2 cut(s)	128, 329
Eco57I	CTGAAG	4 cut(s)	136, 225, 453, 628
EcoICRI	GAGCTC	2 cut(s)	128, 329
EcoRV	GATATC	1 cut(s)	721
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	2 cut(s)	130, 331
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	3 cut(s)	449, 570, 980
FaiI	YATR	8 cut(s)	447, 456, 549, 568, 665, 918, 955, 978
FalI	AAGNNNNNCTT	2 cut(s)	134, 166
FaqI	GGGAC	2 cut(s)	419, 440
FatI	CATG	3 cut(s)	445, 566, 976
FauI	CCCGC	1 cut(s)	417
Fnu4HI	GCNGC	4 cut(s)	96, 99, 108, 690
FokI	GGATG	1 cut(s)	220
FriOI	GRGCYC	2 cut(s)	130, 331
Fsp4HI	GCNGC	4 cut(s)	96, 99, 108, 690
FspBI	CTAG	1 cut(s)	680
GluI	GCNGC	4 cut(s)	96, 99, 108, 690
GsuI	CTGGAG	3 cut(s)	144, 210, 401
HaeIII	GGCC	3 cut(s)	903, 935, 940
HapII	CCGG	1 cut(s)	936
Hin1II	CATG	3 cut(s)	449, 570, 980
HindIII	AAGCTT	1 cut(s)	788
HinfI	GANTC	3 cut(s)	257, 343, 523
HpaII	CCGG	1 cut(s)	936
HphI	GGTGA	1 cut(s)	109
Hpy166II	GTNNAC	1 cut(s)	139
Hpy188I	TCNGA	5 cut(s)	205, 252, 339, 348, 579
Hpy188III	TCNNGA	5 cut(s)	380, 494, 527, 680, 738
Hpy8I	GTNNAC	1 cut(s)	139
HpyAV	CCTTC	2 cut(s)	157, 903
HpyCH4III	ACNGT	1 cut(s)	505
HpyCH4IV	ACGT	3 cut(s)	135, 633, 796
HpyCH4V	TGCA	4 cut(s)	233, 400, 689, 839
HpyF10VI	GCNNNNNNNGC	4 cut(s)	11, 95, 104, 107
HpyF3I	CTNAG	5 cut(s)	22, 32, 310, 347, 706
HpySE526I	ACGT	3 cut(s)	135, 633, 796
Hsp92II	CATG	3 cut(s)	449, 570, 980
KpnI	GGTACC	1 cut(s)	276
Kzo9I	GATC	2 cut(s)	25, 699
LmnI	GCTCC	5 cut(s)	125, 133, 191, 382, 466
Lsp1109I	GCAGC	2 cut(s)	107, 701
LweI	GCATC	4 cut(s)	175, 242, 701, 848
MaeI	CTAG	1 cut(s)	680
MaeII	ACGT	3 cut(s)	135, 633, 796
MaeIII	GTNAC	2 cut(s)	115, 552
MalI	GATC	2 cut(s)	27, 701
MboI	GATC	2 cut(s)	25, 699
MboII	GAAGA	9 cut(s)	142, 218, 368, 446, 449, 627, 630, 631, 634
MfeI	CAATTG	1 cut(s)	15
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	3 cut(s)	130, 331, 821
MlsI	TGGCCA	1 cut(s)	903
MluCI	AATT	8 cut(s)	15, 157, 265, 320, 486, 534, 572, 771
MluNI	TGGCCA	1 cut(s)	903
MlyI	GAGTC	1 cut(s)	337
MnlI	CCTC	9 cut(s)	121, 226, 312, 342, 384, 396, 597, 598, 662
Mox20I	TGGCCA	1 cut(s)	903
MroXI	GAANNNNTTC	2 cut(s)	733, 971
MscI	TGGCCA	1 cut(s)	903
MseI	TTAA	3 cut(s)	239, 296, 792
Msp20I	TGGCCA	1 cut(s)	903
MspA1I	CMGCKG	1 cut(s)	122
MspI	CCGG	1 cut(s)	936
MspR9I	CCNGG	1 cut(s)	937
MunI	CAATTG	1 cut(s)	15
Mva1269I	GAATGC	1 cut(s)	627
MwoI	GCNNNNNNNGC	4 cut(s)	11, 95, 104, 107
NciI	CCSGG	1 cut(s)	937
NdeII	GATC	2 cut(s)	25, 699
NlaIII	CATG	3 cut(s)	449, 570, 980
NlaIV	GGNNCC	4 cut(s)	168, 274, 384, 877
NmuCI	GTSAC	2 cut(s)	115, 552
NspI	RCATGY	1 cut(s)	449
NspV	TTCGAA	1 cut(s)	318
PciI	ACATGT	1 cut(s)	445
PctI	GAATGC	1 cut(s)	627
PdmI	GAANNNNTTC	2 cut(s)	733, 971
PfeI	GAWTC	2 cut(s)	257, 523
PkrI	GCNGC	4 cut(s)	97, 100, 109, 691
PleI	GAGTC	1 cut(s)	337
PpsI	GAGTC	1 cut(s)	337
PscI	ACATGT	1 cut(s)	445
Psp124BI	GAGCTC	2 cut(s)	130, 331
PspN4I	GGNNCC	4 cut(s)	168, 274, 384, 877
PspPI	GGNCC	1 cut(s)	938
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	2 cut(s)	225, 274
RsaNI	GTAC	2 cut(s)	224, 273
SacI	GAGCTC	2 cut(s)	130, 331
SaqAI	TTAA	3 cut(s)	239, 296, 792
SatI	GCNGC	4 cut(s)	96, 99, 108, 690
Sau3AI	GATC	2 cut(s)	25, 699
Sau96I	GGNCC	1 cut(s)	938
SchI	GAGTC	1 cut(s)	337
ScrFI	CCNGG	1 cut(s)	937
SduI	GDGCHC	3 cut(s)	130, 331, 821
SfaNI	GCATC	4 cut(s)	175, 242, 701, 848
SfuI	TTCGAA	1 cut(s)	318
SmlI	CTYRAG	1 cut(s)	962
SmoI	CTYRAG	1 cut(s)	962
Sse9I	AATT	8 cut(s)	15, 157, 265, 320, 486, 534, 572, 771
SsiI	CCGC	7 cut(s)	5, 87, 99, 105, 108, 120, 424
SspI	AATATT	1 cut(s)	246
SspMI	CTAG	1 cut(s)	680
SstI	GAGCTC	2 cut(s)	130, 331
StyD4I	CCNGG	1 cut(s)	935
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	505
TaiI	ACGT	3 cut(s)	138, 636, 799
TaqI	TCGA	3 cut(s)	291, 318, 857
TasI	AATT	8 cut(s)	15, 157, 265, 320, 486, 534, 572, 771
TauI	GCSGC	2 cut(s)	101, 110
TfiI	GAWTC	2 cut(s)	257, 523
Tru1I	TTAA	3 cut(s)	239, 296, 792
Tru9I	TTAA	3 cut(s)	239, 296, 792
TscAI	CASTG	4 cut(s)	436, 652, 849, 911
TseFI	GTSAC	2 cut(s)	115, 552
TseI	GCWGC	2 cut(s)	95, 689
Tsp45I	GTSAC	2 cut(s)	115, 552
TspDTI	ATGAA	3 cut(s)	270, 533, 783
TspGWI	ACGGA	2 cut(s)	103, 535
TspRI	CASTG	4 cut(s)	436, 652, 849, 911
XapI	RAATTY	3 cut(s)	265, 534, 572
XbaI	TCTAGA	1 cut(s)	679
XceI	RCATGY	1 cut(s)	449
XmnI	GAANNNNTTC	2 cut(s)	733, 971
XspI	CTAG	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.