Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005495

Physical Location & Seq

Genomic Coordinates Reverse (-)

51460002 .. 51462827

Gene Structure 2826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG390600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 987 bp

ATGGCGGGAATAGCTATAGTCTTAGATCTGCTGAGAAAAAACCCAAGTCTTACAACCCAAAGCCTTCACGCTTCTGGGTTCTTCTCGGCGAAAGCAGCTGCTTCCGCCGCCGCCGCCGCCGGAGCTCCTTACGTTTACAAGTCCTTGTTCAGTAATTTTAGGGGACCAGTTGCCTATTGTGATGCTGGAGCAACATTGTCGGAAGATTACATCTCTAATTTACGAAGTGCATCCTTAAAAATATTTCAGAATGAATCTGTGAATTACGGTACCAAGGAATACACAATCGAGTTAAAGCCACTATTCTCAGCTTTCGAATTGAGAGCTCTAACTTTGACGACTCTGAGGTCATTTTTACTGTACTTTTTACCTCTTCTGGAGCCTCGTGCAAACTTGGAAGAGGACGATGATGACTTCCTGCAGGACACTGAAGAAGAACAACGTATAGATTATGTTGTTCCATTAAAAAAATCATTAAAGCAGATTGCTCGTGAGACTACTGTCACAACCACTAGACGGATTCTAGAAAGAATTTCTGTTTATTATGTGTCACAGAGAATGGCATGGAAACTTCTGAAAGATCTCCCAAAGTCTGCCATGAGGAAAGCTGGAAGAAGAATGCCAACTTATGTTTTCTTCTTCAATGTTGGCAAAACGACTATGAGAGGACACTTTCTAGGTGTTGCAGCATCTTGGATCATCTCAGTTGGCATTGATATCTACCGAACTTTTAAAGGAATGATAAACTCTAAAGAAGAGGTTGATGAAATCGATACACCACAAAAGCTTAAACTTCTTGGGAATAAGGTTTGGGGCACTACTATCAGGTGTGGTGCATCACTGATTTTTGCTTCAATTGGGGCGGGTATTGGTGCCACTCTTTTTCGCCCTTCAACTGGCCAGTGGGTTGGTTGTGTTCTGGGAGATGTGGCAGGGCCTATTATTGTCTCATATTGCCTTGAGAGATCTTTCCATATAGAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

328

Amino Acids

36.46

Weight (kDa)

9.12

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55610 AT5G55610
fragaria_vesca	FvH4_3g29460
malus_domestica	MD00G1099100.v1.1 MD11G1201600.v1.1
prunus_persica	Prupe.4G240000_v2.0.a1
pyrus_communis	pycom03g13850 pycom11g17410
rosa_chinensis	RchiOBHm_Chr5g0053951 RchiOBHm_Chr5g0077271
rosa_laevigata	RLG00000034912 RLG00000036679
rosa_multiflora	Rmu_sc0008383.1_g000005 Rmu_sc0023670.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004720 Rroxscaffold_1G00026690
rosa_rugosa	Rorug05G0284700 Rorug05G0453200
rosa_samantha	Rh5AG354000 Rh5AG508300 Rh5BG365800 Rh5BG529500 Rh5CG390600 Rh5CG554000 Rh5DG380700 Rh5DG542000
rosa_wichuraiana	Rw0G002080 Rw5G033370 Rw5G046930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	346
Acc65I	GGTACC	1 cut(s)	269
AccB1I	GGYRCC	2 cut(s)	269, 872
AciI	CCGC	7 cut(s)	5, 105, 108, 111, 114, 117, 863
AclWI	GGATC	1 cut(s)	704
AcoI	YGGCCR	1 cut(s)	898
AcsI	RAATTY	1 cut(s)	531
AcuI	CTGAAG	1 cut(s)	450
AfaI	GTAC	2 cut(s)	271, 362
AfiI	CCNNNNNNNGG	2 cut(s)	516, 896
AgsI	TTSAA	3 cut(s)	643, 855, 894
AluBI	AGCT	7 cut(s)	14, 98, 125, 311, 326, 608, 787
AluI	AGCT	7 cut(s)	14, 98, 125, 311, 326, 608, 787
Alw21I	GWGCWC	2 cut(s)	127, 328
Alw26I	GTCTC	2 cut(s)	488, 952
AlwI	GGATC	1 cut(s)	704
AoxI	GGCC	2 cut(s)	898, 935
ApeKI	GCWGC	3 cut(s)	95, 98, 686
ApoI	RAATTY	1 cut(s)	531
Asp718I	GGTACC	1 cut(s)	269
AspS9I	GGNCC	2 cut(s)	164, 935
AsuII	TTCGAA	1 cut(s)	315
AvaII	GGWCC	1 cut(s)	164
BaeGI	GKGCMC	1 cut(s)	818
BalI	TGGCCA	1 cut(s)	900
BanI	GGYRCC	2 cut(s)	269, 872
BanII	GRGCYC	2 cut(s)	127, 328
BauI	CACGAG	2 cut(s)	384, 489
Bbv12I	GWGCWC	2 cut(s)	127, 328
BbvI	GCAGC	3 cut(s)	85, 107, 698
BcgI	CGANNNNNNTGC	4 cut(s)	180, 214, 470, 504
BcoDI	GTCTC	2 cut(s)	488, 952
BfaI	CTAG	3 cut(s)	513, 524, 677
BfmI	CTRYAG	2 cut(s)	15, 419
BglII	AGATCT	3 cut(s)	25, 580, 965
BisI	GCNGC	7 cut(s)	96, 99, 108, 111, 114, 117, 687
BlsI	GCNGC	7 cut(s)	97, 100, 109, 112, 115, 118, 688
Bme18I	GGWCC	1 cut(s)	164
BmgT120I	GGNCC	2 cut(s)	164, 935
BmiI	GGNNCC	4 cut(s)	165, 271, 381, 874
BmsI	GCATC	4 cut(s)	172, 239, 698, 845
BoxI	GACNNNNGTC	1 cut(s)	500
BpmI	CTGGAG	2 cut(s)	207, 398
Bpu14I	TTCGAA	1 cut(s)	315
BpuEI	CTTGAG	1 cut(s)	980
Bsa29I	ATCGAT	1 cut(s)	771
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	2 cut(s)	516, 896
Bse1I	ACTGG	3 cut(s)	167, 901, 901
BseCI	ATCGAT	1 cut(s)	771
BseDI	CCNNGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	230
BseLI	CCNNNNNNNGG	2 cut(s)	516, 896
BseMII	CTCAG	4 cut(s)	23, 321, 335, 717
BseNI	ACTGG	3 cut(s)	167, 901, 901
BseSI	GKGCMC	1 cut(s)	818
BseXI	GCAGC	3 cut(s)	85, 107, 698
BshFI	GGCC	2 cut(s)	900, 937
BshNI	GGYRCC	2 cut(s)	269, 872
BshVI	ATCGAT	1 cut(s)	771
BsiHKAI	GWGCWC	2 cut(s)	127, 328
BsiSI	CCGG	1 cut(s)	120
BslFI	GGGAC	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	516, 896
BsmAI	GTCTC	2 cut(s)	488, 952
BsmFI	GGGAC	1 cut(s)	177
BsmI	GAATGC	1 cut(s)	624
BsnI	GGCC	2 cut(s)	900, 937
Bsp119I	TTCGAA	1 cut(s)	315
Bsp1286I	GDGCHC	3 cut(s)	127, 328, 818
Bsp143I	GATC	4 cut(s)	25, 580, 696, 965
BspACI	CCGC	7 cut(s)	5, 105, 108, 111, 114, 117, 863
BspANI	GGCC	2 cut(s)	900, 937
BspCNI	CTCAG	4 cut(s)	24, 320, 336, 716
BspDI	ATCGAT	1 cut(s)	771
BspLI	GGNNCC	4 cut(s)	165, 271, 381, 874
BspMAI	CTGCAG	1 cut(s)	423
BspPI	GGATC	1 cut(s)	704
BspT104I	TTCGAA	1 cut(s)	315
BspT107I	GGYRCC	2 cut(s)	269, 872
BsrI	ACTGG	3 cut(s)	167, 901, 901
BssECI	CCNNGG	1 cut(s)	273
BssMI	GATC	4 cut(s)	25, 580, 696, 965
BssSI	CACGAG	2 cut(s)	384, 489
BssT1I	CCWWGG	1 cut(s)	273
Bst2BI	CACGAG	2 cut(s)	384, 489
Bst4CI	ACNGT	3 cut(s)	269, 360, 502
Bst6I	CTCTTC	3 cut(s)	378, 393, 750
BstBI	TTCGAA	1 cut(s)	315
BstDEI	CTNAG	5 cut(s)	22, 32, 307, 344, 703
BstF5I	GGATG	1 cut(s)	230
BstKTI	GATC	4 cut(s)	28, 583, 699, 968
BstMAI	GTCTC	2 cut(s)	488, 952
BstMBI	GATC	4 cut(s)	25, 580, 696, 965
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 95, 104, 107, 113, 116, 122
BstPAI	GACNNNNGTC	1 cut(s)	500
BstSFI	CTRYAG	2 cut(s)	15, 419
BstSLI	GKGCMC	1 cut(s)	818
BstV1I	GCAGC	3 cut(s)	85, 107, 698
BstX2I	RGATCY	3 cut(s)	25, 580, 965
BstXI	CCANNNNNNTGG	1 cut(s)	908
BstYI	RGATCY	3 cut(s)	25, 580, 965
Bsu15I	ATCGAT	1 cut(s)	771
BsuRI	GGCC	2 cut(s)	900, 937
BsuTUI	ATCGAT	1 cut(s)	771
BtsCI	GGATG	1 cut(s)	230
BtsIMutI	CAGTG	3 cut(s)	426, 839, 908
Cfr13I	GGNCC	2 cut(s)	164, 935
ClaI	ATCGAT	1 cut(s)	771
Csp6I	GTAC	2 cut(s)	270, 361
CviAII	CATG	2 cut(s)	564, 598
CviQI	GTAC	2 cut(s)	270, 361
DdeI	CTNAG	5 cut(s)	22, 32, 307, 344, 703
DpnI	GATC	4 cut(s)	27, 582, 698, 967
DpnII	GATC	4 cut(s)	25, 580, 696, 965
DraI	TTTAAA	1 cut(s)	733
DrdI	GACNNNNNNGTC	1 cut(s)	346
DseDI	GACNNNNNNGTC	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	898
Eam1104I	CTCTTC	3 cut(s)	378, 393, 750
EarI	CTCTTC	3 cut(s)	378, 393, 750
EciI	GGCGGA	1 cut(s)	94
Ecl136II	GAGCTC	2 cut(s)	125, 326
Eco130I	CCWWGG	1 cut(s)	273
Eco24I	GRGCYC	2 cut(s)	127, 328
Eco32I	GATATC	1 cut(s)	718
Eco47I	GGWCC	1 cut(s)	164
Eco53kI	GAGCTC	2 cut(s)	125, 326
Eco57I	CTGAAG	1 cut(s)	450
EcoICRI	GAGCTC	2 cut(s)	125, 326
EcoO109I	RGGNCCY	1 cut(s)	935
EcoRV	GATATC	1 cut(s)	718
EcoT14I	CCWWGG	1 cut(s)	273
EcoT38I	GRGCYC	2 cut(s)	127, 328
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	2 cut(s)	567, 601
FaqI	GGGAC	1 cut(s)	177
FatI	CATG	2 cut(s)	563, 597
FauI	CCCGC	1 cut(s)	856
Fnu4HI	GCNGC	7 cut(s)	96, 99, 108, 111, 114, 117, 687
FokI	GGATG	1 cut(s)	217
FriOI	GRGCYC	2 cut(s)	127, 328
Fsp4HI	GCNGC	7 cut(s)	96, 99, 108, 111, 114, 117, 687
FspBI	CTAG	3 cut(s)	513, 524, 677
GluI	GCNGC	7 cut(s)	96, 99, 108, 111, 114, 117, 687
GsuI	CTGGAG	2 cut(s)	207, 398
HaeIII	GGCC	2 cut(s)	900, 937
HapII	CCGG	1 cut(s)	120
Hin1II	CATG	2 cut(s)	567, 601
HindIII	AAGCTT	1 cut(s)	785
HinfI	GANTC	3 cut(s)	254, 340, 520
HpaII	CCGG	1 cut(s)	120
Hpy166II	GTNNAC	1 cut(s)	136
Hpy188I	TCNGA	4 cut(s)	202, 249, 345, 576
Hpy188III	TCNNGA	3 cut(s)	377, 491, 524
Hpy8I	GTNNAC	1 cut(s)	136
HpyAV	CCTTC	2 cut(s)	74, 900
HpyCH4III	ACNGT	3 cut(s)	269, 360, 502
HpyCH4IV	ACGT	2 cut(s)	132, 442
HpyCH4V	TGCA	5 cut(s)	230, 389, 421, 686, 836
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 95, 104, 107, 113, 116, 122
HpyF3I	CTNAG	5 cut(s)	22, 32, 307, 344, 703
HpySE526I	ACGT	2 cut(s)	132, 442
Hsp92II	CATG	2 cut(s)	567, 601
KpnI	GGTACC	1 cut(s)	273
Kzo9I	GATC	4 cut(s)	25, 580, 696, 965
LmnI	GCTCC	4 cut(s)	122, 130, 188, 379
Lsp1109I	GCAGC	3 cut(s)	85, 107, 698
LweI	GCATC	4 cut(s)	172, 239, 698, 845
MaeI	CTAG	3 cut(s)	513, 524, 677
MaeII	ACGT	2 cut(s)	132, 442
MaeIII	GTNAC	2 cut(s)	502, 549
MalI	GATC	4 cut(s)	27, 582, 698, 967
MboI	GATC	4 cut(s)	25, 580, 696, 965
MfeI	CAATTG	1 cut(s)	855
MflI	RGATCY	3 cut(s)	25, 580, 965
MhlI	GDGCHC	3 cut(s)	127, 328, 818
MlsI	TGGCCA	1 cut(s)	900
MluCI	AATT	6 cut(s)	154, 217, 262, 317, 531, 855
MluNI	TGGCCA	1 cut(s)	900
MlyI	GAGTC	1 cut(s)	334
MmeI	TCCRAC	1 cut(s)	180
MnlI	CCTC	7 cut(s)	339, 381, 393, 394, 594, 659, 751
Mox20I	TGGCCA	1 cut(s)	900
MscI	TGGCCA	1 cut(s)	900
MseI	TTAA	6 cut(s)	236, 293, 464, 476, 732, 789
Msp20I	TGGCCA	1 cut(s)	900
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	1 cut(s)	120
MunI	CAATTG	1 cut(s)	855
Mva1269I	GAATGC	1 cut(s)	624
MwoI	GCNNNNNNNGC	7 cut(s)	11, 95, 104, 107, 113, 116, 122
NdeII	GATC	4 cut(s)	25, 580, 696, 965
NlaIII	CATG	2 cut(s)	567, 601
NlaIV	GGNNCC	4 cut(s)	165, 271, 381, 874
NmeAIII	GCCGAG	1 cut(s)	65
NmuCI	GTSAC	2 cut(s)	502, 549
NspV	TTCGAA	1 cut(s)	315
PctI	GAATGC	1 cut(s)	624
PfeI	GAWTC	2 cut(s)	254, 520
PkrI	GCNGC	7 cut(s)	97, 100, 109, 112, 115, 118, 688
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
PshAI	GACNNNNGTC	1 cut(s)	500
Psp124BI	GAGCTC	2 cut(s)	127, 328
PspN4I	GGNNCC	4 cut(s)	165, 271, 381, 874
PspPI	GGNCC	2 cut(s)	164, 935
PstI	CTGCAG	1 cut(s)	423
PsuI	RGATCY	3 cut(s)	25, 580, 965
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	271, 362
RsaNI	GTAC	2 cut(s)	270, 361
SacI	GAGCTC	2 cut(s)	127, 328
SaqAI	TTAA	6 cut(s)	236, 293, 464, 476, 732, 789
SatI	GCNGC	7 cut(s)	96, 99, 108, 111, 114, 117, 687
Sau3AI	GATC	4 cut(s)	25, 580, 696, 965
Sau96I	GGNCC	2 cut(s)	164, 935
SbfI	CCTGCAGG	1 cut(s)	423
SchI	GAGTC	1 cut(s)	334
SdaI	CCTGCAGG	1 cut(s)	423
SduI	GDGCHC	3 cut(s)	127, 328, 818
SfaNI	GCATC	4 cut(s)	172, 239, 698, 845
SfcI	CTRYAG	2 cut(s)	15, 419
SfuI	TTCGAA	1 cut(s)	315
SinI	GGWCC	1 cut(s)	164
SmlI	CTYRAG	1 cut(s)	959
SmoI	CTYRAG	1 cut(s)	959
Sse8387I	CCTGCAGG	1 cut(s)	423
Sse9I	AATT	6 cut(s)	154, 217, 262, 317, 531, 855
SsiI	CCGC	7 cut(s)	5, 105, 108, 111, 114, 117, 863
SspI	AATATT	1 cut(s)	243
SspMI	CTAG	3 cut(s)	513, 524, 677
SstI	GAGCTC	2 cut(s)	127, 328
StyI	CCWWGG	1 cut(s)	273
TaaI	ACNGT	3 cut(s)	269, 360, 502
TaiI	ACGT	2 cut(s)	135, 445
TaqI	TCGA	3 cut(s)	288, 315, 771
TasI	AATT	6 cut(s)	154, 217, 262, 317, 531, 855
TatI	WGTACW	1 cut(s)	360
TauI	GCSGC	4 cut(s)	110, 113, 116, 119
TfiI	GAWTC	2 cut(s)	254, 520
Tru1I	TTAA	6 cut(s)	236, 293, 464, 476, 732, 789
Tru9I	TTAA	6 cut(s)	236, 293, 464, 476, 732, 789
TscAI	CASTG	3 cut(s)	433, 846, 908
TseFI	GTSAC	2 cut(s)	502, 549
TseI	GCWGC	3 cut(s)	95, 98, 686
Tsp45I	GTSAC	2 cut(s)	502, 549
TspDTI	ATGAA	2 cut(s)	267, 780
TspGWI	ACGGA	1 cut(s)	532
TspRI	CASTG	3 cut(s)	433, 846, 908
VpaK11BI	GGWCC	1 cut(s)	164
XapI	RAATTY	1 cut(s)	531
XbaI	TCTAGA	1 cut(s)	523
XspI	CTAG	3 cut(s)	513, 524, 677

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.