Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0005495

Physical Location & Seq

Genomic Coordinates Reverse (-)

14934180 .. 14937237

Gene Structure 3058 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g13850.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGCGGGAATAGCAATAATCCTAGATCTGTTGCGGAAAAAACCAAGTCCCAGTACAGTCCAAGCATTACACTCTGCTGGGTATTTTTCGGCCAAAGCCGCCGCTTCTGCCGCTGCTGCGTCTGTCGCCGCCGGTGCTCCTTATGCTTATAAGGCATTATTCGGTAATTTCAGGGTGCCGGTTGCCCATTGTGATGCTGGAACAGCATGGTCTGAAGATTATGTTTCTAATATACGAAGTTCATCTCAACGAATCTTTCAGAGTGACTCTCATAATTACAGTACCAAGGAATACAAAATTGAGTTAAAGCCTCTATTCTCAGCTTTTGAATTGAGGACTCTAACTATGACAACCTTGAGGTCATTTTTAATGTTCTTTTTACCTCTTTTGGAGCCTCGTACAAACTTGGAAGAGGATGATGATGACTTCCTGCCGGACACTGAAGAAAAGCAACCTATAGATTATGTTGTTCCTCTAAAAAAATCAGTAGTGCAGATTATTCGTGAGACTTCTGTTGTAACCACTAGACGGATTCTGGAACGAATTTGTGTCCATTATGTATCAGAGAGAATGGCATGGAAACTTCTCAAAGATGTTCCTAAGTCCGCCATGCGGAAAGCTGGAAGAAGATTGCCTACTTTAGTTTTCTTCTGTAGTGTTAGCAAAACAACTTTCAGAGCGTCATGGCTCATCCAAGTTGGCATTGATGTCTACCGATATATTTCTCGTACAATAAAGTCTAGAGAAGAGGTTGATGACATCGATACGGCAGAACAAGTTAAGATTCTTGGGAAGAAGGTTACAGTTACTACTATCAGGTGTGGTGCATCACTAGTTTTTGCTTCCATTGGGGCCGGTATTGGTGCCTCCCTTATCCGCCCTTCATCTGGCCAGTGGATTGGCTGTCTTTTGGGGGATTTGGCAGGGCCTTTAATTGTAACAGCTTGCCTTGGGAGAGTTTACCATGGAGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

326

Amino Acids

35.94

Weight (kDa)

9.22

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55610 AT5G55610
fragaria_vesca	FvH4_3g29460
malus_domestica	MD00G1099100.v1.1 MD11G1201600.v1.1
prunus_persica	Prupe.4G240000_v2.0.a1
pyrus_communis	pycom03g13850 pycom11g17410
rosa_chinensis	RchiOBHm_Chr5g0053951 RchiOBHm_Chr5g0077271
rosa_laevigata	RLG00000034912 RLG00000036679
rosa_multiflora	Rmu_sc0008383.1_g000005 Rmu_sc0023670.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004720 Rroxscaffold_1G00026690
rosa_rugosa	Rorug05G0284700 Rorug05G0453200
rosa_samantha	Rh5AG354000 Rh5AG508300 Rh5BG365800 Rh5BG529500 Rh5CG390600 Rh5CG554000 Rh5DG380700 Rh5DG542000
rosa_wichuraiana	Rw0G002080 Rw5G033370 Rw5G046930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	150
AccB1I	GGYRCC	2 cut(s)	175, 863
AccI	GTMKAC	1 cut(s)	711
AciI	CCGC	9 cut(s)	5, 34, 99, 102, 111, 129, 606, 613, 877
AcoI	YGGCCR	2 cut(s)	90, 889
AcsI	RAATTY	1 cut(s)	543
AcuI	CTGAAG	2 cut(s)	234, 462
AfaI	GTAC	4 cut(s)	55, 283, 400, 730
AfiI	CCNNNNNNNGG	3 cut(s)	528, 612, 887
AgsI	TTSAA	1 cut(s)	329
AhlI	ACTAGT	1 cut(s)	832
AluBI	AGCT	3 cut(s)	323, 620, 944
AluI	AGCT	3 cut(s)	323, 620, 944
Alw21I	GWGCWC	1 cut(s)	139
Alw26I	GTCTC	1 cut(s)	500
AoxI	GGCC	4 cut(s)	90, 852, 889, 926
ApeKI	GCWGC	2 cut(s)	113, 116
ApoI	RAATTY	1 cut(s)	543
AspS9I	GGNCC	2 cut(s)	852, 926
BalI	TGGCCA	1 cut(s)	891
BanI	GGYRCC	2 cut(s)	175, 863
BarI	GAAGNNNNNNTAC	2 cut(s)	619, 651
Bbv12I	GWGCWC	1 cut(s)	139
BbvI	GCAGC	2 cut(s)	100, 103
BceAI	ACGGC	1 cut(s)	783
BcgI	CGANNNNNNTGC	2 cut(s)	482, 516
BcoDI	GTCTC	1 cut(s)	500
BcuI	ACTAGT	1 cut(s)	832
BfaI	CTAG	4 cut(s)	23, 525, 741, 833
BfmI	CTRYAG	2 cut(s)	456, 652
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	6 cut(s)	99, 102, 111, 114, 117, 129
BlsI	GCNGC	6 cut(s)	100, 103, 112, 115, 118, 130
BmgT120I	GGNCC	2 cut(s)	852, 926
BmiI	GGNNCC	4 cut(s)	177, 393, 853, 865
BmrI	ACTGGG	1 cut(s)	45
BmsI	GCATC	2 cut(s)	184, 836
BmuI	ACTGGG	1 cut(s)	45
BplI	GAGNNNNNCTC	2 cut(s)	253, 285
BpuEI	CTTGAG	1 cut(s)	376
Bsa29I	ATCGAT	1 cut(s)	762
BsaJI	CCNNGG	3 cut(s)	285, 949, 964
Bsc4I	CCNNNNNNNGG	3 cut(s)	528, 612, 887
Bse118I	RCCGGY	3 cut(s)	131, 178, 854
Bse1I	ACTGG	2 cut(s)	51, 892
BseCI	ATCGAT	1 cut(s)	762
BseDI	CCNNGG	3 cut(s)	285, 949, 964
BseGI	GGATG	2 cut(s)	421, 690
BseLI	CCNNNNNNNGG	3 cut(s)	528, 612, 887
BseMII	CTCAG	1 cut(s)	333
BseNI	ACTGG	2 cut(s)	51, 892
BseXI	GCAGC	2 cut(s)	100, 103
BseYI	CCCAGC	1 cut(s)	77
BsgI	GTGCAG	1 cut(s)	512
BshFI	GGCC	4 cut(s)	92, 854, 891, 928
BshNI	GGYRCC	2 cut(s)	175, 863
BshVI	ATCGAT	1 cut(s)	762
BsiHKAI	GWGCWC	1 cut(s)	139
BsiSI	CCGG	4 cut(s)	132, 179, 434, 855
BslFI	GGGAC	1 cut(s)	33
BslI	CCNNNNNNNGG	3 cut(s)	528, 612, 887
BsmAI	GTCTC	1 cut(s)	500
BsmFI	GGGAC	1 cut(s)	33
BsnI	GGCC	4 cut(s)	92, 854, 891, 928
Bsp1286I	GDGCHC	1 cut(s)	139
Bsp143I	GATC	1 cut(s)	25
Bsp19I	CCATGG	1 cut(s)	964
BspACI	CCGC	9 cut(s)	5, 34, 99, 102, 111, 129, 606, 613, 877
BspANI	GGCC	4 cut(s)	92, 854, 891, 928
BspCNI	CTCAG	1 cut(s)	332
BspDI	ATCGAT	1 cut(s)	762
BspLI	GGNNCC	4 cut(s)	177, 393, 853, 865
BspT107I	GGYRCC	2 cut(s)	175, 863
BsrFI	RCCGGY	3 cut(s)	131, 178, 854
BsrI	ACTGG	2 cut(s)	51, 892
BssAI	RCCGGY	3 cut(s)	131, 178, 854
BssECI	CCNNGG	3 cut(s)	285, 949, 964
BssMI	GATC	1 cut(s)	25
BssT1I	CCWWGG	3 cut(s)	285, 949, 964
Bst4CI	ACNGT	3 cut(s)	58, 281, 805
Bst6I	CTCTTC	2 cut(s)	405, 741
BstC8I	GCNNGC	1 cut(s)	946
BstDEI	CTNAG	2 cut(s)	319, 600
BstDSI	CCRYGG	1 cut(s)	964
BstF5I	GGATG	2 cut(s)	421, 690
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	1 cut(s)	500
BstMBI	GATC	1 cut(s)	25
BstSFI	CTRYAG	2 cut(s)	456, 652
BstV1I	GCAGC	2 cut(s)	100, 103
BstX2I	RGATCY	1 cut(s)	25
BstXI	CCANNNNNNTGG	1 cut(s)	899
BstYI	RGATCY	1 cut(s)	25
Bsu15I	ATCGAT	1 cut(s)	762
BsuRI	GGCC	4 cut(s)	92, 854, 891, 928
BsuTUI	ATCGAT	1 cut(s)	762
BtgI	CCRYGG	1 cut(s)	964
BtsCI	GGATG	2 cut(s)	421, 690
BtsIMutI	CAGTG	2 cut(s)	438, 899
Cac8I	GCNNGC	1 cut(s)	946
Cfr10I	RCCGGY	3 cut(s)	131, 178, 854
Cfr13I	GGNCC	2 cut(s)	852, 926
ClaI	ATCGAT	1 cut(s)	762
CseI	GACGC	2 cut(s)	108, 669
Csp6I	GTAC	4 cut(s)	54, 282, 399, 729
CviAII	CATG	5 cut(s)	207, 576, 610, 684, 965
CviQI	GTAC	4 cut(s)	54, 282, 399, 729
DdeI	CTNAG	2 cut(s)	319, 600
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
EaeI	YGGCCR	2 cut(s)	90, 889
Eam1104I	CTCTTC	2 cut(s)	405, 741
EarI	CTCTTC	2 cut(s)	405, 741
EciI	GGCGGA	2 cut(s)	595, 866
Eco130I	CCWWGG	3 cut(s)	285, 949, 964
Eco57I	CTGAAG	2 cut(s)	234, 462
EcoO109I	RGGNCCY	1 cut(s)	926
EcoT14I	CCWWGG	3 cut(s)	285, 949, 964
ErhI	CCWWGG	3 cut(s)	285, 949, 964
FaeI	CATG	5 cut(s)	210, 579, 613, 687, 968
FaqI	GGGAC	1 cut(s)	33
FatI	CATG	5 cut(s)	206, 575, 609, 683, 964
FblI	GTMKAC	1 cut(s)	711
Fnu4HI	GCNGC	6 cut(s)	99, 102, 111, 114, 117, 129
FokI	GGATG	2 cut(s)	428, 677
Fsp4HI	GCNGC	6 cut(s)	99, 102, 111, 114, 117, 129
FspBI	CTAG	4 cut(s)	23, 525, 741, 833
GluI	GCNGC	6 cut(s)	99, 102, 111, 114, 117, 129
GsaI	CCCAGC	1 cut(s)	81
HaeIII	GGCC	4 cut(s)	92, 854, 891, 928
HapII	CCGG	4 cut(s)	132, 179, 434, 855
HgaI	GACGC	2 cut(s)	108, 669
Hin1II	CATG	5 cut(s)	210, 579, 613, 687, 968
HinfI	GANTC	5 cut(s)	252, 266, 337, 532, 784
HpaII	CCGG	4 cut(s)	132, 179, 434, 855
Hpy166II	GTNNAC	2 cut(s)	712, 961
Hpy188I	TCNGA	4 cut(s)	214, 261, 565, 677
Hpy188III	TCNNGA	3 cut(s)	503, 536, 741
Hpy8I	GTNNAC	2 cut(s)	712, 961
HpyAV	CCTTC	2 cut(s)	790, 891
HpyCH4III	ACNGT	3 cut(s)	58, 281, 805
HpyCH4V	TGCA	2 cut(s)	493, 827
HpyF3I	CTNAG	2 cut(s)	319, 600
Hsp92II	CATG	5 cut(s)	210, 579, 613, 687, 968
Kzo9I	GATC	1 cut(s)	25
LmnI	GCTCC	2 cut(s)	142, 391
Lsp1109I	GCAGC	2 cut(s)	100, 103
LweI	GCATC	2 cut(s)	184, 836
MaeI	CTAG	4 cut(s)	23, 525, 741, 833
MaeIII	GTNAC	5 cut(s)	263, 517, 799, 805, 937
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	8 cut(s)	227, 422, 455, 636, 639, 640, 758, 805
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	1 cut(s)	139
MlsI	TGGCCA	1 cut(s)	891
MluCI	AATT	6 cut(s)	166, 274, 297, 329, 543, 933
MluNI	TGGCCA	1 cut(s)	891
MlyI	GAGTC	2 cut(s)	260, 331
MnlI	CCTC	9 cut(s)	321, 327, 351, 393, 405, 406, 483, 742, 877
Mox20I	TGGCCA	1 cut(s)	891
MscI	TGGCCA	1 cut(s)	891
MseI	TTAA	4 cut(s)	305, 368, 780, 932
MslI	CAYNNNNRTG	1 cut(s)	192
Msp20I	TGGCCA	1 cut(s)	891
MspA1I	CMGCKG	1 cut(s)	113
MspI	CCGG	4 cut(s)	132, 179, 434, 855
NcoI	CCATGG	1 cut(s)	964
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	5 cut(s)	210, 579, 613, 687, 968
NlaIV	GGNNCC	4 cut(s)	177, 393, 853, 865
NmuCI	GTSAC	1 cut(s)	263
PfeI	GAWTC	3 cut(s)	252, 532, 784
PkrI	GCNGC	6 cut(s)	100, 103, 112, 115, 118, 130
PleI	GAGTC	2 cut(s)	260, 331
PpsI	GAGTC	2 cut(s)	260, 331
PsiI	TTATAA	1 cut(s)	150
PspFI	CCCAGC	1 cut(s)	77
PspN4I	GGNNCC	4 cut(s)	177, 393, 853, 865
PspPI	GGNCC	2 cut(s)	852, 926
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	4 cut(s)	55, 283, 400, 730
RsaNI	GTAC	4 cut(s)	54, 282, 399, 729
RseI	CAYNNNNRTG	1 cut(s)	192
SaqAI	TTAA	4 cut(s)	305, 368, 780, 932
SatI	GCNGC	6 cut(s)	99, 102, 111, 114, 117, 129
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	2 cut(s)	852, 926
SchI	GAGTC	2 cut(s)	260, 331
SduI	GDGCHC	1 cut(s)	139
SfaNI	GCATC	2 cut(s)	184, 836
SfcI	CTRYAG	2 cut(s)	456, 652
SgrAI	CRCCGGYG	1 cut(s)	131
SmiMI	CAYNNNNRTG	1 cut(s)	192
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
SpeI	ACTAGT	1 cut(s)	832
Sse9I	AATT	6 cut(s)	166, 274, 297, 329, 543, 933
SsiI	CCGC	9 cut(s)	5, 34, 99, 102, 111, 129, 606, 613, 877
SspMI	CTAG	4 cut(s)	23, 525, 741, 833
StyI	CCWWGG	3 cut(s)	285, 949, 964
TaaI	ACNGT	3 cut(s)	58, 281, 805
TaqI	TCGA	1 cut(s)	762
TasI	AATT	6 cut(s)	166, 274, 297, 329, 543, 933
TatI	WGTACW	1 cut(s)	53
TauI	GCSGC	4 cut(s)	101, 104, 113, 131
TfiI	GAWTC	3 cut(s)	252, 532, 784
Tru1I	TTAA	4 cut(s)	305, 368, 780, 932
Tru9I	TTAA	4 cut(s)	305, 368, 780, 932
TscAI	CASTG	2 cut(s)	445, 899
TseFI	GTSAC	1 cut(s)	263
TseI	GCWGC	2 cut(s)	113, 116
Tsp45I	GTSAC	1 cut(s)	263
TspDTI	ATGAA	2 cut(s)	231, 873
TspGWI	ACGGA	1 cut(s)	544
TspRI	CASTG	2 cut(s)	445, 899
XapI	RAATTY	1 cut(s)	543
XbaI	TCTAGA	1 cut(s)	740
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194
XmiI	GTMKAC	1 cut(s)	711
XspI	CTAG	4 cut(s)	23, 525, 741, 833

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.