Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0005495

Physical Location & Seq

Genomic Coordinates Forward (+)

15780632 .. 15784611

Gene Structure 3980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G240000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

ATGGCGGGAATAGCTATACTGTTAGATCTACTGAGAAAAAACCCAACTCAAACAGCCCAGGCATTACACTCTTCTGGGTTTTTCTCAGCCAAAGCCGCTGCTGCTGCTGCCTCTGTTGCCGCTGGAGCTCCGTATGTTTACAAGACATTATTCGGTAATTTTAGGATACCGGTTGCCTACTGTGATGCTGGAACAGCATGGTCTGAAGACCATGTTTCTAATTTACGAAGCGCATCTCAAAGATTGTTTCAGAATGACTCTCTGAATTACAGTACCAAGGATTACAAAATTGAGTTAAAGCCTCTGTTCTCAGCTTTTGAATGGAGGGCTCTAGCTATGACAACTTTGAGGTCATTTTTAATGTTCTTTTTACCTCTTTTGGAGCCTCGTTCAAACTTGGAAGAGGATGATGATGACTTCCTGCCAGACACTGAGGAAGAGCAGCATGTAGACTATGCTGTGCCAATAAAAAAATCAGTAATTCAAATTGTTCGTGAGACAACTGTTGTAACTACAAGACGGATTCTAGAACGACTTGCTGTCCATTATGTTTCACAGAGAATGGCATGGAAACTTCTTAAAGATGTTCCAAAGTCAGCCATGAGGAAAGCTGGAAGAAAGTTGCCTACTTTGGTTTTCTTCTTCAGTGTTAGCAGAACAACTTTCAGAGGGCACTTTCTGGGTGTTGCAGCGTCATGGCTCATCCAAGTAGGCATTGAAATCTACCGATTTTTTTCTCATATGATAAAGTCTAAAGAAGAAGTTGATGACATTGATACACCAGAGCAACTTAAACTTCTTGCGACAAAGGTTTCAAGTGCTACTATCAAGTGTGGTGCATCACTAGTTTTTGCTTCCATTGGGGCAGGTATTGGTGCCACTCTTATCCGCCCGTCGGTTGGCCAGTGGATTGGCTGTGCCGTGGGGGATTTGTCTGGGCCTGTTATCGTATCATATTGCTTTGGGAGAATTTTCCCTGCAGAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

330

Amino Acids

36.47

Weight (kDa)

8.94

Isoelectric Point (pI)

32.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55610 AT5G55610
fragaria_vesca	FvH4_3g29460
malus_domestica	MD00G1099100.v1.1 MD11G1201600.v1.1
prunus_persica	Prupe.4G240000_v2.0.a1
pyrus_communis	pycom03g13850 pycom11g17410
rosa_chinensis	RchiOBHm_Chr5g0053951 RchiOBHm_Chr5g0077271
rosa_laevigata	RLG00000034912 RLG00000036679
rosa_multiflora	Rmu_sc0008383.1_g000005 Rmu_sc0023670.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004720 Rroxscaffold_1G00026690
rosa_rugosa	Rorug05G0284700 Rorug05G0453200
rosa_samantha	Rh5AG354000 Rh5AG508300 Rh5BG365800 Rh5BG529500 Rh5CG390600 Rh5CG554000 Rh5DG380700 Rh5DG542000
rosa_wichuraiana	Rw0G002080 Rw5G033370 Rw5G046930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	857
AccB1I	GGYRCC	1 cut(s)	875
AccI	GTMKAC	1 cut(s)	450
AciI	CCGC	4 cut(s)	5, 96, 120, 889
AcoI	YGGCCR	1 cut(s)	901
AcsI	RAATTY	1 cut(s)	969
AcuI	CTGAAG	2 cut(s)	225, 628
AfaI	GTAC	1 cut(s)	274
AfiI	CCNNNNNNNGG	2 cut(s)	895, 899
AgeI	ACCGGT	1 cut(s)	169
AgsI	TTSAA	5 cut(s)	320, 393, 485, 719, 816
AhdI	GACNNNNNGTC	1 cut(s)	539
AhlI	ACTAGT	1 cut(s)	844
AjnI	CCWGG	1 cut(s)	57
AluBI	AGCT	5 cut(s)	14, 128, 314, 335, 611
AluI	AGCT	5 cut(s)	14, 128, 314, 335, 611
Alw21I	GWGCWC	1 cut(s)	130
Alw26I	GTCTC	1 cut(s)	491
AlwNI	CAGNNNCTG	1 cut(s)	431
AoxI	GGCC	2 cut(s)	901, 938
ApeKI	GCWGC	6 cut(s)	98, 101, 104, 107, 442, 689
ApoI	RAATTY	1 cut(s)	969
AsiGI	ACCGGT	1 cut(s)	169
AspLEI	GCGC	1 cut(s)	233
AspS9I	GGNCC	1 cut(s)	938
BaeGI	GKGCMC	1 cut(s)	675
BalI	TGGCCA	1 cut(s)	903
BanI	GGYRCC	1 cut(s)	875
BanII	GRGCYC	2 cut(s)	130, 331
BbsI	GAAGAC	1 cut(s)	213
Bbv12I	GWGCWC	1 cut(s)	130
BbvI	GCAGC	6 cut(s)	85, 88, 91, 94, 454, 701
BceAI	ACGGC	1 cut(s)	905
BciT130I	CCWGG	1 cut(s)	59
BciVI	GTATCC	1 cut(s)	159
BcoDI	GTCTC	1 cut(s)	491
BcuI	ACTAGT	1 cut(s)	844
BfaI	CTAG	3 cut(s)	332, 527, 845
BfmI	CTRYAG	1 cut(s)	978
BfuAI	ACCTGC	1 cut(s)	857
BfuI	GTATCC	1 cut(s)	159
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	8 cut(s)	96, 99, 102, 105, 108, 120, 443, 690
BlsI	GCNGC	8 cut(s)	97, 100, 103, 106, 109, 121, 444, 691
Bme1390I	CCNGG	1 cut(s)	59
BmeRI	GACNNNNNGTC	1 cut(s)	539
BmgT120I	GGNCC	1 cut(s)	938
BmiI	GGNNCC	2 cut(s)	384, 877
BmrFI	CCNGG	1 cut(s)	59
BmsI	GCATC	3 cut(s)	175, 242, 848
BpiI	GAAGAC	1 cut(s)	213
BpmI	CTGGAG	1 cut(s)	144
BsaJI	CCNNGG	3 cut(s)	57, 276, 921
BsaWI	WCCGGW	1 cut(s)	169
Bsc4I	CCNNNNNNNGG	2 cut(s)	895, 899
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	1 cut(s)	904
BseBI	CCWGG	1 cut(s)	59
BseDI	CCNNGG	3 cut(s)	57, 276, 921
BseGI	GGATG	2 cut(s)	412, 702
BseLI	CCNNNNNNNGG	2 cut(s)	895, 899
BseMII	CTCAG	4 cut(s)	23, 99, 324, 423
BseNI	ACTGG	1 cut(s)	904
BseSI	GKGCMC	1 cut(s)	675
BseXI	GCAGC	6 cut(s)	85, 88, 91, 94, 454, 701
BshFI	GGCC	2 cut(s)	903, 940
BshNI	GGYRCC	1 cut(s)	875
BshTI	ACCGGT	1 cut(s)	169
BsiHKAI	GWGCWC	1 cut(s)	130
BsiSI	CCGG	1 cut(s)	170
BslI	CCNNNNNNNGG	2 cut(s)	895, 899
BsmAI	GTCTC	1 cut(s)	491
BsnI	GGCC	2 cut(s)	903, 940
Bsp1286I	GDGCHC	3 cut(s)	130, 331, 675
Bsp143I	GATC	1 cut(s)	25
BspACI	CCGC	4 cut(s)	5, 96, 120, 889
BspANI	GGCC	2 cut(s)	903, 940
BspCNI	CTCAG	4 cut(s)	24, 98, 323, 424
BspLI	GGNNCC	2 cut(s)	384, 877
BspMAI	CTGCAG	1 cut(s)	982
BspMI	ACCTGC	1 cut(s)	857
BspQI	GCTCTTC	1 cut(s)	432
BspT107I	GGYRCC	1 cut(s)	875
BsrFI	RCCGGY	1 cut(s)	169
BsrI	ACTGG	1 cut(s)	904
BssAI	RCCGGY	1 cut(s)	169
BssECI	CCNNGG	3 cut(s)	57, 276, 921
BssMI	GATC	1 cut(s)	25
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	59
Bst4CI	ACNGT	4 cut(s)	21, 182, 272, 505
Bst6I	CTCTTC	3 cut(s)	76, 396, 432
BstDEI	CTNAG	4 cut(s)	32, 85, 310, 432
BstDSI	CCRYGG	1 cut(s)	921
BstF5I	GGATG	2 cut(s)	412, 702
BstHHI	GCGC	1 cut(s)	233
BstKTI	GATC	1 cut(s)	28
BstMAI	GTCTC	1 cut(s)	491
BstMBI	GATC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 95, 101, 104, 107, 116, 125, 194
BstNI	CCWGG	1 cut(s)	59
BstNSI	RCATGY	1 cut(s)	449
BstSCI	CCNGG	1 cut(s)	57
BstSFI	CTRYAG	1 cut(s)	978
BstSLI	GKGCMC	1 cut(s)	675
BstV1I	GCAGC	6 cut(s)	85, 88, 91, 94, 454, 701
BstV2I	GAAGAC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	25
BstXI	CCANNNNNNTGG	1 cut(s)	911
BstYI	RGATCY	1 cut(s)	25
BsuI	GTATCC	1 cut(s)	159
BsuRI	GGCC	2 cut(s)	903, 940
BtgI	CCRYGG	1 cut(s)	921
BtsCI	GGATG	2 cut(s)	412, 702
BtsIMutI	CAGTG	3 cut(s)	429, 652, 911
BveI	ACCTGC	1 cut(s)	857
CaiI	CAGNNNCTG	1 cut(s)	431
CfoI	GCGC	1 cut(s)	233
Cfr10I	RCCGGY	1 cut(s)	169
Cfr13I	GGNCC	1 cut(s)	938
CseI	GACGC	1 cut(s)	681
Csp6I	GTAC	1 cut(s)	273
CspAI	ACCGGT	1 cut(s)	169
CviAII	CATG	6 cut(s)	198, 212, 446, 567, 601, 696
CviQI	GTAC	1 cut(s)	273
DdeI	CTNAG	4 cut(s)	32, 85, 310, 432
DpnI	GATC	1 cut(s)	27
DpnII	GATC	1 cut(s)	25
DriI	GACNNNNNGTC	1 cut(s)	539
EaeI	YGGCCR	1 cut(s)	901
Eam1104I	CTCTTC	3 cut(s)	76, 396, 432
Eam1105I	GACNNNNNGTC	1 cut(s)	539
EarI	CTCTTC	3 cut(s)	76, 396, 432
EciI	GGCGGA	1 cut(s)	878
Ecl136II	GAGCTC	1 cut(s)	128
Eco130I	CCWWGG	1 cut(s)	276
Eco24I	GRGCYC	2 cut(s)	130, 331
Eco53kI	GAGCTC	1 cut(s)	128
Eco57I	CTGAAG	2 cut(s)	225, 628
EcoICRI	GAGCTC	1 cut(s)	128
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	276
EcoT38I	GRGCYC	2 cut(s)	130, 331
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	6 cut(s)	201, 215, 449, 570, 604, 699
FatI	CATG	6 cut(s)	197, 211, 445, 566, 600, 695
FauNDI	CATATG	1 cut(s)	741
FblI	GTMKAC	1 cut(s)	450
Fnu4HI	GCNGC	8 cut(s)	96, 99, 102, 105, 108, 120, 443, 690
FokI	GGATG	2 cut(s)	419, 689
FriOI	GRGCYC	2 cut(s)	130, 331
Fsp4HI	GCNGC	8 cut(s)	96, 99, 102, 105, 108, 120, 443, 690
FspBI	CTAG	3 cut(s)	332, 527, 845
GlaI	GCGC	1 cut(s)	232
GluI	GCNGC	8 cut(s)	96, 99, 102, 105, 108, 120, 443, 690
GsuI	CTGGAG	1 cut(s)	144
HaeIII	GGCC	2 cut(s)	903, 940
HapII	CCGG	1 cut(s)	170
HgaI	GACGC	1 cut(s)	681
HhaI	GCGC	1 cut(s)	233
Hin1II	CATG	6 cut(s)	201, 215, 449, 570, 604, 699
Hin6I	GCGC	1 cut(s)	231
HinP1I	GCGC	1 cut(s)	231
HinfI	GANTC	2 cut(s)	257, 523
HpaII	CCGG	1 cut(s)	170
Hpy166II	GTNNAC	2 cut(s)	139, 451
Hpy188I	TCNGA	4 cut(s)	205, 252, 264, 668
Hpy188III	TCNNGA	2 cut(s)	494, 527
Hpy8I	GTNNAC	2 cut(s)	139, 451
Hpy99I	CGWCG	1 cut(s)	898
HpyCH4III	ACNGT	4 cut(s)	21, 182, 272, 505
HpyCH4V	TGCA	3 cut(s)	689, 839, 980
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 95, 101, 104, 107, 116, 125, 194
HpyF3I	CTNAG	4 cut(s)	32, 85, 310, 432
Hsp92II	CATG	6 cut(s)	201, 215, 449, 570, 604, 699
HspAI	GCGC	1 cut(s)	231
Kzo9I	GATC	1 cut(s)	25
LguI	GCTCTTC	1 cut(s)	432
LmnI	GCTCC	3 cut(s)	125, 133, 382
Lsp1109I	GCAGC	6 cut(s)	85, 88, 91, 94, 454, 701
LweI	GCATC	3 cut(s)	175, 242, 848
MaeI	CTAG	3 cut(s)	332, 527, 845
MaeIII	GTNAC	1 cut(s)	508
MalI	GATC	1 cut(s)	27
MboI	GATC	1 cut(s)	25
MboII	GAAGA	8 cut(s)	63, 218, 413, 449, 627, 631, 634, 770
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	3 cut(s)	130, 331, 675
MlsI	TGGCCA	1 cut(s)	903
MluCI	AATT	7 cut(s)	157, 220, 265, 288, 480, 486, 969
MluNI	TGGCCA	1 cut(s)	903
MlyI	GAGTC	1 cut(s)	251
Mox20I	TGGCCA	1 cut(s)	903
MscI	TGGCCA	1 cut(s)	903
MseI	TTAA	4 cut(s)	296, 359, 579, 792
Msp20I	TGGCCA	1 cut(s)	903
MspA1I	CMGCKG	2 cut(s)	98, 122
MspI	CCGG	1 cut(s)	170
MspR9I	CCNGG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	8 cut(s)	11, 95, 101, 104, 107, 116, 125, 194
NdeI	CATATG	1 cut(s)	741
NdeII	GATC	1 cut(s)	25
NlaIII	CATG	6 cut(s)	201, 215, 449, 570, 604, 699
NlaIV	GGNNCC	2 cut(s)	384, 877
NspI	RCATGY	1 cut(s)	449
PciSI	GCTCTTC	1 cut(s)	432
PfeI	GAWTC	1 cut(s)	523
PinAI	ACCGGT	1 cut(s)	169
PkrI	GCNGC	8 cut(s)	97, 100, 103, 106, 109, 121, 444, 691
PleI	GAGTC	1 cut(s)	251
PpsI	GAGTC	1 cut(s)	251
Psp124BI	GAGCTC	1 cut(s)	130
Psp6I	CCWGG	1 cut(s)	57
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	2 cut(s)	384, 877
PspPI	GGNCC	1 cut(s)	938
PstI	CTGCAG	1 cut(s)	982
PstNI	CAGNNNCTG	1 cut(s)	431
PsuI	RGATCY	1 cut(s)	25
RsaI	GTAC	1 cut(s)	274
RsaNI	GTAC	1 cut(s)	273
SacI	GAGCTC	1 cut(s)	130
SapI	GCTCTTC	1 cut(s)	432
SaqAI	TTAA	4 cut(s)	296, 359, 579, 792
SatI	GCNGC	8 cut(s)	96, 99, 102, 105, 108, 120, 443, 690
Sau3AI	GATC	1 cut(s)	25
Sau96I	GGNCC	1 cut(s)	938
SchI	GAGTC	1 cut(s)	251
ScrFI	CCNGG	1 cut(s)	59
SduI	GDGCHC	3 cut(s)	130, 331, 675
SetI	ASST	9 cut(s)	16, 130, 316, 337, 353, 376, 613, 813, 871
SfaNI	GCATC	3 cut(s)	175, 242, 848
SfcI	CTRYAG	1 cut(s)	978
SpeI	ACTAGT	1 cut(s)	844
Sse9I	AATT	7 cut(s)	157, 220, 265, 288, 480, 486, 969
SsiI	CCGC	4 cut(s)	5, 96, 120, 889
SspMI	CTAG	3 cut(s)	332, 527, 845
SstI	GAGCTC	1 cut(s)	130
StyD4I	CCNGG	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	4 cut(s)	21, 182, 272, 505
TasI	AATT	7 cut(s)	157, 220, 265, 288, 480, 486, 969
TauI	GCSGC	2 cut(s)	98, 122
TfiI	GAWTC	1 cut(s)	523
Tru1I	TTAA	4 cut(s)	296, 359, 579, 792
Tru9I	TTAA	4 cut(s)	296, 359, 579, 792
TscAI	CASTG	3 cut(s)	436, 652, 911
TseI	GCWGC	6 cut(s)	98, 101, 104, 107, 442, 689
TspGWI	ACGGA	2 cut(s)	120, 535
TspRI	CASTG	3 cut(s)	436, 652, 911
XapI	RAATTY	1 cut(s)	969
XbaI	TCTAGA	1 cut(s)	526
XceI	RCATGY	1 cut(s)	449
XmiI	GTMKAC	1 cut(s)	450
XspI	CTAG	3 cut(s)	332, 527, 845

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.