Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005495

Physical Location & Seq

Genomic Coordinates Reverse (-)

56290848 .. 56294217

Gene Structure 3370 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ33118

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGGCGGGAATAGCTATAGTCTTAGATCTGCTGAGAAAAAACCCAAGTCTTACAACCCAAAGCCTTCACGCTTCTGGGTTCTTCTCGGCCAAAGCAGCTGCTTCCGCCGCCGCCGCTTCCGTCGCCGCCGGAGCTCCTTACGTTTACAAGTCCTTGTTCAGTAATTTTAGGGGACCAGTTGCCTATTGTGATGCTGGAGCAACATTGTCTGAAGATTACATCTCTAATTTACGAAGTGCATCCTTAAAAATATTTCAGAATGAATCTGTGAATTACGGTACCAAGGAATACACAATCGAGTTAAAGCCACTCTTCTCAGCTTTCGAATTGAGAGCTCTAACTTTGACGACTGTGAGGTCATTTTTACTGTACTTTTTACCTCTTCTGGAGCCTCGTGCAAACTTGGAAGAGGACGATGATGACTTCCTGCAGGACACTGAAGAAGAACAACGTATAGATTATGTTGTTCCATTAAAAAAATCATTAAAGCAGATTGCTCGTGAGACTACTGTCACAACCACTAGACGGATTCTAGAAAGAATTTCTGTTTATTATGTGTCACAGAGAATGGCATGGAAACTTCTGAAAGATCTCCCAAAGTCTGCCATGAGGAAAGCTGGAAGAAGAATGCCAACTTATGTTTTCTTCTTCAGTGTTGGCAAAACGACTATGAGAGGACACTTTCTAGGTGTTGCAGCATCTTGGATCATCTCAGTTGGCATTGATATCTACCGAACTTTTAAAGGAATGATAAACTCTAAAGAAGAGGTTGATGAAATCGATACACCACAAAAGCTTAAACTTCTTGGGAATAAGGTTTGGGGCACTACTATCAGGTGTGGCGCATCACTGATTTTTGCTTCAATTGGGGCGGGTATTGGTGCCACTCTTTTTCGCCCTTCAACTGGCCAGTGGATTGGTTGTGTTCTGGGAGATGTGGCAGGGCCTATTATTGTCTCATATTGCCTTGAGAGATCTTTCCATATAGAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

331

Amino Acids

36.69

Weight (kDa)

9.12

Isoelectric Point (pI)

32.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55610 AT5G55610
fragaria_vesca	FvH4_3g29460
malus_domestica	MD00G1099100.v1.1 MD11G1201600.v1.1
prunus_persica	Prupe.4G240000_v2.0.a1
pyrus_communis	pycom03g13850 pycom11g17410
rosa_chinensis	RchiOBHm_Chr5g0053951 RchiOBHm_Chr5g0077271
rosa_laevigata	RLG00000034912 RLG00000036679
rosa_multiflora	Rmu_sc0008383.1_g000005 Rmu_sc0023670.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004720 Rroxscaffold_1G00026690
rosa_rugosa	Rorug05G0284700 Rorug05G0453200
rosa_samantha	Rh5AG354000 Rh5AG508300 Rh5BG365800 Rh5BG529500 Rh5CG390600 Rh5CG554000 Rh5DG380700 Rh5DG542000
rosa_wichuraiana	Rw0G002080 Rw5G033370 Rw5G046930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	355
Acc65I	GGTACC	1 cut(s)	278
AccB1I	GGYRCC	2 cut(s)	278, 881
AciI	CCGC	7 cut(s)	5, 105, 108, 111, 114, 126, 872
AclWI	GGATC	1 cut(s)	713
AcoI	YGGCCR	2 cut(s)	87, 907
AcsI	RAATTY	1 cut(s)	540
AcuI	CTGAAG	3 cut(s)	231, 459, 634
AfaI	GTAC	2 cut(s)	280, 371
AfiI	CCNNNNNNNGG	2 cut(s)	525, 905
AgsI	TTSAA	2 cut(s)	864, 903
AluBI	AGCT	7 cut(s)	14, 98, 134, 320, 335, 617, 796
AluI	AGCT	7 cut(s)	14, 98, 134, 320, 335, 617, 796
Alw21I	GWGCWC	2 cut(s)	136, 337
Alw26I	GTCTC	2 cut(s)	497, 961
AlwI	GGATC	1 cut(s)	713
AoxI	GGCC	3 cut(s)	87, 907, 944
ApeKI	GCWGC	3 cut(s)	95, 98, 695
ApoI	RAATTY	1 cut(s)	540
Asp718I	GGTACC	1 cut(s)	278
AspLEI	GCGC	1 cut(s)	845
AspS9I	GGNCC	2 cut(s)	173, 944
AsuII	TTCGAA	1 cut(s)	324
AvaII	GGWCC	1 cut(s)	173
BaeGI	GKGCMC	1 cut(s)	827
BalI	TGGCCA	1 cut(s)	909
BanI	GGYRCC	2 cut(s)	278, 881
BanII	GRGCYC	2 cut(s)	136, 337
BauI	CACGAG	2 cut(s)	393, 498
Bbv12I	GWGCWC	2 cut(s)	136, 337
BbvI	GCAGC	3 cut(s)	85, 107, 707
BcgI	CGANNNNNNTGC	2 cut(s)	479, 513
BcoDI	GTCTC	2 cut(s)	497, 961
BfaI	CTAG	3 cut(s)	522, 533, 686
BfmI	CTRYAG	2 cut(s)	15, 428
BglII	AGATCT	3 cut(s)	25, 589, 974
BisI	GCNGC	7 cut(s)	96, 99, 108, 111, 114, 126, 696
BlsI	GCNGC	7 cut(s)	97, 100, 109, 112, 115, 127, 697
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	2 cut(s)	173, 944
BmiI	GGNNCC	4 cut(s)	174, 280, 390, 883
BmsI	GCATC	4 cut(s)	181, 248, 707, 854
BoxI	GACNNNNGTC	1 cut(s)	509
BpmI	CTGGAG	2 cut(s)	216, 407
Bpu14I	TTCGAA	1 cut(s)	324
BpuEI	CTTGAG	1 cut(s)	989
Bsa29I	ATCGAT	1 cut(s)	780
BsaJI	CCNNGG	1 cut(s)	282
Bsc4I	CCNNNNNNNGG	2 cut(s)	525, 905
Bse1I	ACTGG	3 cut(s)	176, 910, 910
BseCI	ATCGAT	1 cut(s)	780
BseDI	CCNNGG	1 cut(s)	282
BseGI	GGATG	1 cut(s)	239
BseLI	CCNNNNNNNGG	2 cut(s)	525, 905
BseMII	CTCAG	3 cut(s)	23, 330, 726
BseNI	ACTGG	3 cut(s)	176, 910, 910
BseSI	GKGCMC	1 cut(s)	827
BseXI	GCAGC	3 cut(s)	85, 107, 707
BshFI	GGCC	3 cut(s)	89, 909, 946
BshNI	GGYRCC	2 cut(s)	278, 881
BshVI	ATCGAT	1 cut(s)	780
BsiHKAI	GWGCWC	2 cut(s)	136, 337
BsiSI	CCGG	1 cut(s)	129
BslFI	GGGAC	1 cut(s)	186
BslI	CCNNNNNNNGG	2 cut(s)	525, 905
BsmAI	GTCTC	2 cut(s)	497, 961
BsmFI	GGGAC	1 cut(s)	186
BsmI	GAATGC	1 cut(s)	633
BsnI	GGCC	3 cut(s)	89, 909, 946
Bsp119I	TTCGAA	1 cut(s)	324
Bsp1286I	GDGCHC	3 cut(s)	136, 337, 827
Bsp143I	GATC	4 cut(s)	25, 589, 705, 974
BspACI	CCGC	7 cut(s)	5, 105, 108, 111, 114, 126, 872
BspANI	GGCC	3 cut(s)	89, 909, 946
BspCNI	CTCAG	3 cut(s)	24, 329, 725
BspDI	ATCGAT	1 cut(s)	780
BspLI	GGNNCC	4 cut(s)	174, 280, 390, 883
BspMAI	CTGCAG	1 cut(s)	432
BspPI	GGATC	1 cut(s)	713
BspT104I	TTCGAA	1 cut(s)	324
BspT107I	GGYRCC	2 cut(s)	278, 881
BsrI	ACTGG	3 cut(s)	176, 910, 910
BssECI	CCNNGG	1 cut(s)	282
BssMI	GATC	4 cut(s)	25, 589, 705, 974
BssSI	CACGAG	2 cut(s)	393, 498
BssT1I	CCWWGG	1 cut(s)	282
Bst2BI	CACGAG	2 cut(s)	393, 498
Bst4CI	ACNGT	4 cut(s)	278, 352, 369, 511
Bst6I	CTCTTC	4 cut(s)	317, 387, 402, 759
BstBI	TTCGAA	1 cut(s)	324
BstDEI	CTNAG	4 cut(s)	22, 32, 316, 712
BstF5I	GGATG	1 cut(s)	239
BstHHI	GCGC	1 cut(s)	845
BstKTI	GATC	4 cut(s)	28, 592, 708, 977
BstMAI	GTCTC	2 cut(s)	497, 961
BstMBI	GATC	4 cut(s)	25, 589, 705, 974
BstMWI	GCNNNNNNNGC	7 cut(s)	11, 95, 104, 107, 113, 122, 131
BstPAI	GACNNNNGTC	1 cut(s)	509
BstSFI	CTRYAG	2 cut(s)	15, 428
BstSLI	GKGCMC	1 cut(s)	827
BstV1I	GCAGC	3 cut(s)	85, 107, 707
BstX2I	RGATCY	3 cut(s)	25, 589, 974
BstXI	CCANNNNNNTGG	1 cut(s)	917
BstYI	RGATCY	3 cut(s)	25, 589, 974
Bsu15I	ATCGAT	1 cut(s)	780
BsuRI	GGCC	3 cut(s)	89, 909, 946
BsuTUI	ATCGAT	1 cut(s)	780
BtsCI	GGATG	1 cut(s)	239
BtsIMutI	CAGTG	4 cut(s)	435, 658, 848, 917
CfoI	GCGC	1 cut(s)	845
Cfr13I	GGNCC	2 cut(s)	173, 944
ClaI	ATCGAT	1 cut(s)	780
Csp6I	GTAC	2 cut(s)	279, 370
CviAII	CATG	2 cut(s)	573, 607
CviQI	GTAC	2 cut(s)	279, 370
DdeI	CTNAG	4 cut(s)	22, 32, 316, 712
DpnI	GATC	4 cut(s)	27, 591, 707, 976
DpnII	GATC	4 cut(s)	25, 589, 705, 974
DraI	TTTAAA	1 cut(s)	742
DrdI	GACNNNNNNGTC	1 cut(s)	355
DseDI	GACNNNNNNGTC	1 cut(s)	355
EaeI	YGGCCR	2 cut(s)	87, 907
Eam1104I	CTCTTC	4 cut(s)	317, 387, 402, 759
EarI	CTCTTC	4 cut(s)	317, 387, 402, 759
EciI	GGCGGA	1 cut(s)	94
Ecl136II	GAGCTC	2 cut(s)	134, 335
Eco130I	CCWWGG	1 cut(s)	282
Eco24I	GRGCYC	2 cut(s)	136, 337
Eco32I	GATATC	1 cut(s)	727
Eco47I	GGWCC	1 cut(s)	173
Eco53kI	GAGCTC	2 cut(s)	134, 335
Eco57I	CTGAAG	3 cut(s)	231, 459, 634
EcoICRI	GAGCTC	2 cut(s)	134, 335
EcoO109I	RGGNCCY	1 cut(s)	944
EcoRV	GATATC	1 cut(s)	727
EcoT14I	CCWWGG	1 cut(s)	282
EcoT38I	GRGCYC	2 cut(s)	136, 337
ErhI	CCWWGG	1 cut(s)	282
FaeI	CATG	2 cut(s)	576, 610
FalI	AAGNNNNNCTT	2 cut(s)	296, 328
FaqI	GGGAC	1 cut(s)	186
FatI	CATG	2 cut(s)	572, 606
FauI	CCCGC	1 cut(s)	865
Fnu4HI	GCNGC	7 cut(s)	96, 99, 108, 111, 114, 126, 696
FokI	GGATG	1 cut(s)	226
FriOI	GRGCYC	2 cut(s)	136, 337
Fsp4HI	GCNGC	7 cut(s)	96, 99, 108, 111, 114, 126, 696
FspBI	CTAG	3 cut(s)	522, 533, 686
GlaI	GCGC	1 cut(s)	844
GluI	GCNGC	7 cut(s)	96, 99, 108, 111, 114, 126, 696
GsuI	CTGGAG	2 cut(s)	216, 407
HaeIII	GGCC	3 cut(s)	89, 909, 946
HapII	CCGG	1 cut(s)	129
HhaI	GCGC	1 cut(s)	845
Hin1II	CATG	2 cut(s)	576, 610
Hin6I	GCGC	1 cut(s)	843
HinP1I	GCGC	1 cut(s)	843
HindIII	AAGCTT	1 cut(s)	794
HinfI	GANTC	2 cut(s)	263, 529
HpaII	CCGG	1 cut(s)	129
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	3 cut(s)	211, 258, 585
Hpy188III	TCNNGA	3 cut(s)	386, 500, 533
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	1 cut(s)	125
HpyAV	CCTTC	2 cut(s)	74, 909
HpyCH4III	ACNGT	4 cut(s)	278, 352, 369, 511
HpyCH4IV	ACGT	2 cut(s)	141, 451
HpyCH4V	TGCA	4 cut(s)	239, 398, 430, 695
HpyF10VI	GCNNNNNNNGC	7 cut(s)	11, 95, 104, 107, 113, 122, 131
HpyF3I	CTNAG	4 cut(s)	22, 32, 316, 712
HpySE526I	ACGT	2 cut(s)	141, 451
Hsp92II	CATG	2 cut(s)	576, 610
HspAI	GCGC	1 cut(s)	843
KpnI	GGTACC	1 cut(s)	282
Kzo9I	GATC	4 cut(s)	25, 589, 705, 974
LmnI	GCTCC	4 cut(s)	131, 139, 197, 388
Lsp1109I	GCAGC	3 cut(s)	85, 107, 707
LweI	GCATC	4 cut(s)	181, 248, 707, 854
MaeI	CTAG	3 cut(s)	522, 533, 686
MaeII	ACGT	2 cut(s)	141, 451
MaeIII	GTNAC	2 cut(s)	511, 558
MalI	GATC	4 cut(s)	27, 591, 707, 976
MboI	GATC	4 cut(s)	25, 589, 705, 974
MfeI	CAATTG	1 cut(s)	864
MflI	RGATCY	3 cut(s)	25, 589, 974
MhlI	GDGCHC	3 cut(s)	136, 337, 827
MlsI	TGGCCA	1 cut(s)	909
MluCI	AATT	6 cut(s)	163, 226, 271, 326, 540, 864
MluNI	TGGCCA	1 cut(s)	909
MnlI	CCTC	7 cut(s)	348, 390, 402, 403, 603, 668, 760
Mox20I	TGGCCA	1 cut(s)	909
MscI	TGGCCA	1 cut(s)	909
MseI	TTAA	6 cut(s)	245, 302, 473, 485, 741, 798
Msp20I	TGGCCA	1 cut(s)	909
MspA1I	CMGCKG	1 cut(s)	98
MspI	CCGG	1 cut(s)	129
MunI	CAATTG	1 cut(s)	864
Mva1269I	GAATGC	1 cut(s)	633
MwoI	GCNNNNNNNGC	7 cut(s)	11, 95, 104, 107, 113, 122, 131
NdeII	GATC	4 cut(s)	25, 589, 705, 974
NlaIII	CATG	2 cut(s)	576, 610
NlaIV	GGNNCC	4 cut(s)	174, 280, 390, 883
NmeAIII	GCCGAG	1 cut(s)	65
NmuCI	GTSAC	2 cut(s)	511, 558
NspV	TTCGAA	1 cut(s)	324
PctI	GAATGC	1 cut(s)	633
PfeI	GAWTC	2 cut(s)	263, 529
PkrI	GCNGC	7 cut(s)	97, 100, 109, 112, 115, 127, 697
PshAI	GACNNNNGTC	1 cut(s)	509
Psp124BI	GAGCTC	2 cut(s)	136, 337
PspN4I	GGNNCC	4 cut(s)	174, 280, 390, 883
PspPI	GGNCC	2 cut(s)	173, 944
PstI	CTGCAG	1 cut(s)	432
PsuI	RGATCY	3 cut(s)	25, 589, 974
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	280, 371
RsaNI	GTAC	2 cut(s)	279, 370
SacI	GAGCTC	2 cut(s)	136, 337
SaqAI	TTAA	6 cut(s)	245, 302, 473, 485, 741, 798
SatI	GCNGC	7 cut(s)	96, 99, 108, 111, 114, 126, 696
Sau3AI	GATC	4 cut(s)	25, 589, 705, 974
Sau96I	GGNCC	2 cut(s)	173, 944
SbfI	CCTGCAGG	1 cut(s)	432
SdaI	CCTGCAGG	1 cut(s)	432
SduI	GDGCHC	3 cut(s)	136, 337, 827
SfaNI	GCATC	4 cut(s)	181, 248, 707, 854
SfcI	CTRYAG	2 cut(s)	15, 428
SfuI	TTCGAA	1 cut(s)	324
SinI	GGWCC	1 cut(s)	173
SmlI	CTYRAG	1 cut(s)	968
SmoI	CTYRAG	1 cut(s)	968
Sse8387I	CCTGCAGG	1 cut(s)	432
Sse9I	AATT	6 cut(s)	163, 226, 271, 326, 540, 864
SsiI	CCGC	7 cut(s)	5, 105, 108, 111, 114, 126, 872
SspI	AATATT	1 cut(s)	252
SspMI	CTAG	3 cut(s)	522, 533, 686
SstI	GAGCTC	2 cut(s)	136, 337
StyI	CCWWGG	1 cut(s)	282
TaaI	ACNGT	4 cut(s)	278, 352, 369, 511
TaiI	ACGT	2 cut(s)	144, 454
TaqI	TCGA	3 cut(s)	297, 324, 780
TasI	AATT	6 cut(s)	163, 226, 271, 326, 540, 864
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	4 cut(s)	110, 113, 116, 128
TfiI	GAWTC	2 cut(s)	263, 529
Tru1I	TTAA	6 cut(s)	245, 302, 473, 485, 741, 798
Tru9I	TTAA	6 cut(s)	245, 302, 473, 485, 741, 798
TscAI	CASTG	4 cut(s)	442, 658, 855, 917
TseFI	GTSAC	2 cut(s)	511, 558
TseI	GCWGC	3 cut(s)	95, 98, 695
Tsp45I	GTSAC	2 cut(s)	511, 558
TspDTI	ATGAA	2 cut(s)	276, 789
TspGWI	ACGGA	2 cut(s)	109, 541
TspRI	CASTG	4 cut(s)	442, 658, 855, 917
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	540
XbaI	TCTAGA	1 cut(s)	532
XspI	CTAG	3 cut(s)	522, 533, 686

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.