Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005495

Physical Location & Seq

Genomic Coordinates Forward (+)

33640591 .. 33643752

Gene Structure 3162 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00026690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

ATGGCGGGAATAGCTATAGTCTTAGATCTGCTGAGAAAAAACCCAAGTCTTACAACCCAAAGCCTTCACGCTTCTGGGTTCTTCTCGGCCAAAGCAGCTGCTTCCGCCGCCGCCGCCTCCGCCTCCGTTGCCGCTGGAGCTCCTTACGTTTACAAGTCCTTGTTCAGGGTACCAGTTGCCTATTGTGATGCTGGAGCAACATTGTCTGAAGATTACATCTCTAATTTACGAAGTGCTTCCTTAAAAATATTTCAGAATGAATCTGTGAATTACGGTACCAAGGAATACACAATCGAGTTAAAGCCACTATTCTCAGCTTTCGAATTGAGAGCTCTAACTTTGACGACTCTGAGGTCATTTTTACTGTACTTTTTACCTCTTCTGGAGCCTCGTGCAAACTTGGAAGAGGACGATGATGACTTCCTGCAGGACACTGAAGAAGAACAACGCATAGATTATGTTGTTCCATTAAAAAAATCACTAAAGCAGATTGCTCGTGAGACTACTGTCACAACCACTAGACGGATTCTAGAAAGAATTTCTGTTTATTATGTGTCACAGAGAATGGCATGGAAACTTCTGAAAGATCTCCCAAAGTCTGCCATGAGGAAAGCTGGAAGAAGAATGCCAACTTATGTTTTCTTCTTCAGTGTTGGCAAAACGACTATGAGAGGACACTTTCTAGGTGTTGCAGCATCTTGGATCATCTCAGTTGGCATTGATATCTACCGAACTTTTAAAGGAATGATAAACTCTAAAGAAGAGGTTGATGAAATCGATACACCACAAAAGCTAAAACTTCTTGGGAATAAGGTTTGGGGCACTACTATCAGGTGTGCTGCATCACTGATTTTTGCTTCAATTGGGGCGGCTATTGGTGCCACTCTTTTTCGCCCTTCAACTGGCCAGTGGGTTGGTTGTGTTCTGGGGGATGTGGCAGGGCCTATTATTGTCTCATATTGCCTTGAGAGATCTTTCCATATAGAACTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

330

Amino Acids

36.57

Weight (kDa)

9.12

Isoelectric Point (pI)

34.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55610 AT5G55610
fragaria_vesca	FvH4_3g29460
malus_domestica	MD00G1099100.v1.1 MD11G1201600.v1.1
prunus_persica	Prupe.4G240000_v2.0.a1
pyrus_communis	pycom03g13850 pycom11g17410
rosa_chinensis	RchiOBHm_Chr5g0053951 RchiOBHm_Chr5g0077271
rosa_laevigata	RLG00000034912 RLG00000036679
rosa_multiflora	Rmu_sc0008383.1_g000005 Rmu_sc0023670.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004720 Rroxscaffold_1G00026690
rosa_rugosa	Rorug05G0284700 Rorug05G0453200
rosa_samantha	Rh5AG354000 Rh5AG508300 Rh5BG365800 Rh5BG529500 Rh5CG390600 Rh5CG554000 Rh5DG380700 Rh5DG542000
rosa_wichuraiana	Rw0G002080 Rw5G033370 Rw5G046930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	352
Acc65I	GGTACC	2 cut(s)	169, 275
AccB1I	GGYRCC	3 cut(s)	169, 275, 878
AciI	CCGC	8 cut(s)	5, 105, 108, 111, 114, 120, 132, 869
AclWI	GGATC	1 cut(s)	710
AcoI	YGGCCR	2 cut(s)	87, 904
AcsI	RAATTY	1 cut(s)	537
AcuI	CTGAAG	3 cut(s)	228, 456, 631
AfaI	GTAC	3 cut(s)	171, 277, 368
AfiI	CCNNNNNNNGG	3 cut(s)	165, 522, 902
AgsI	TTSAA	2 cut(s)	861, 900
AluBI	AGCT	7 cut(s)	14, 98, 140, 317, 332, 614, 793
AluI	AGCT	7 cut(s)	14, 98, 140, 317, 332, 614, 793
Alw21I	GWGCWC	2 cut(s)	142, 334
Alw26I	GTCTC	2 cut(s)	494, 958
AlwI	GGATC	1 cut(s)	710
AoxI	GGCC	3 cut(s)	87, 904, 941
ApeKI	GCWGC	4 cut(s)	95, 98, 692, 839
ApoI	RAATTY	1 cut(s)	537
Asp700I	GAANNNNTTC	1 cut(s)	235
Asp718I	GGTACC	2 cut(s)	169, 275
AspS9I	GGNCC	1 cut(s)	941
AsuII	TTCGAA	1 cut(s)	321
BaeGI	GKGCMC	1 cut(s)	824
BalI	TGGCCA	1 cut(s)	906
BanI	GGYRCC	3 cut(s)	169, 275, 878
BanII	GRGCYC	2 cut(s)	142, 334
BauI	CACGAG	2 cut(s)	390, 495
Bbv12I	GWGCWC	2 cut(s)	142, 334
BbvI	GCAGC	4 cut(s)	85, 107, 704, 826
BcgI	CGANNNNNNTGC	2 cut(s)	476, 510
BcoDI	GTCTC	2 cut(s)	494, 958
BfaI	CTAG	3 cut(s)	519, 530, 683
BfmI	CTRYAG	2 cut(s)	15, 425
BglII	AGATCT	3 cut(s)	25, 586, 971
BisI	GCNGC	9 cut(s)	96, 99, 108, 111, 114, 132, 693, 840, 870
BlsI	GCNGC	9 cut(s)	97, 100, 109, 112, 115, 133, 694, 841, 871
BmgT120I	GGNCC	1 cut(s)	941
BmiI	GGNNCC	4 cut(s)	171, 277, 387, 880
BmsI	GCATC	3 cut(s)	178, 704, 851
BoxI	GACNNNNGTC	1 cut(s)	506
BpmI	CTGGAG	3 cut(s)	156, 213, 404
Bpu14I	TTCGAA	1 cut(s)	321
BpuEI	CTTGAG	1 cut(s)	986
Bsa29I	ATCGAT	1 cut(s)	777
BsaJI	CCNNGG	1 cut(s)	279
Bsc4I	CCNNNNNNNGG	3 cut(s)	165, 522, 902
Bse1I	ACTGG	3 cut(s)	173, 907, 907
BseCI	ATCGAT	1 cut(s)	777
BseDI	CCNNGG	1 cut(s)	279
BseGI	GGATG	1 cut(s)	937
BseLI	CCNNNNNNNGG	3 cut(s)	165, 522, 902
BseMII	CTCAG	4 cut(s)	23, 327, 341, 723
BseNI	ACTGG	3 cut(s)	173, 907, 907
BseSI	GKGCMC	1 cut(s)	824
BseXI	GCAGC	4 cut(s)	85, 107, 704, 826
BshFI	GGCC	3 cut(s)	89, 906, 943
BshNI	GGYRCC	3 cut(s)	169, 275, 878
BshVI	ATCGAT	1 cut(s)	777
BsiHKAI	GWGCWC	2 cut(s)	142, 334
BslI	CCNNNNNNNGG	3 cut(s)	165, 522, 902
BsmAI	GTCTC	2 cut(s)	494, 958
BsmI	GAATGC	1 cut(s)	630
BsnI	GGCC	3 cut(s)	89, 906, 943
Bsp119I	TTCGAA	1 cut(s)	321
Bsp1286I	GDGCHC	3 cut(s)	142, 334, 824
Bsp143I	GATC	4 cut(s)	25, 586, 702, 971
BspACI	CCGC	8 cut(s)	5, 105, 108, 111, 114, 120, 132, 869
BspANI	GGCC	3 cut(s)	89, 906, 943
BspCNI	CTCAG	4 cut(s)	24, 326, 342, 722
BspDI	ATCGAT	1 cut(s)	777
BspLI	GGNNCC	4 cut(s)	171, 277, 387, 880
BspMAI	CTGCAG	1 cut(s)	429
BspPI	GGATC	1 cut(s)	710
BspT104I	TTCGAA	1 cut(s)	321
BspT107I	GGYRCC	3 cut(s)	169, 275, 878
BsrI	ACTGG	3 cut(s)	173, 907, 907
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	4 cut(s)	25, 586, 702, 971
BssSI	CACGAG	2 cut(s)	390, 495
BssT1I	CCWWGG	1 cut(s)	279
Bst2BI	CACGAG	2 cut(s)	390, 495
Bst4CI	ACNGT	3 cut(s)	275, 366, 508
Bst6I	CTCTTC	3 cut(s)	384, 399, 756
BstBI	TTCGAA	1 cut(s)	321
BstDEI	CTNAG	5 cut(s)	22, 32, 313, 350, 709
BstENI	CCTNNNNNAGG	1 cut(s)	163
BstF5I	GGATG	1 cut(s)	937
BstKTI	GATC	4 cut(s)	28, 589, 705, 974
BstMAI	GTCTC	2 cut(s)	494, 958
BstMBI	GATC	4 cut(s)	25, 586, 702, 971
BstMWI	GCNNNNNNNGC	9 cut(s)	11, 95, 104, 107, 113, 119, 128, 137, 878
BstPAI	GACNNNNGTC	1 cut(s)	506
BstSFI	CTRYAG	2 cut(s)	15, 425
BstSLI	GKGCMC	1 cut(s)	824
BstV1I	GCAGC	4 cut(s)	85, 107, 704, 826
BstX2I	RGATCY	3 cut(s)	25, 586, 971
BstXI	CCANNNNNNTGG	1 cut(s)	914
BstYI	RGATCY	3 cut(s)	25, 586, 971
Bsu15I	ATCGAT	1 cut(s)	777
BsuRI	GGCC	3 cut(s)	89, 906, 943
BsuTUI	ATCGAT	1 cut(s)	777
BtsCI	GGATG	1 cut(s)	937
BtsIMutI	CAGTG	4 cut(s)	432, 655, 845, 914
Cfr13I	GGNCC	1 cut(s)	941
ClaI	ATCGAT	1 cut(s)	777
Csp6I	GTAC	3 cut(s)	170, 276, 367
CviAII	CATG	2 cut(s)	570, 604
CviQI	GTAC	3 cut(s)	170, 276, 367
DdeI	CTNAG	5 cut(s)	22, 32, 313, 350, 709
DpnI	GATC	4 cut(s)	27, 588, 704, 973
DpnII	GATC	4 cut(s)	25, 586, 702, 971
DraI	TTTAAA	1 cut(s)	739
DrdI	GACNNNNNNGTC	1 cut(s)	352
DseDI	GACNNNNNNGTC	1 cut(s)	352
EaeI	YGGCCR	2 cut(s)	87, 904
Eam1104I	CTCTTC	3 cut(s)	384, 399, 756
EarI	CTCTTC	3 cut(s)	384, 399, 756
EciI	GGCGGA	2 cut(s)	94, 109
Ecl136II	GAGCTC	2 cut(s)	140, 332
Eco130I	CCWWGG	1 cut(s)	279
Eco24I	GRGCYC	2 cut(s)	142, 334
Eco32I	GATATC	1 cut(s)	724
Eco53kI	GAGCTC	2 cut(s)	140, 332
Eco57I	CTGAAG	3 cut(s)	228, 456, 631
EcoICRI	GAGCTC	2 cut(s)	140, 332
EcoNI	CCTNNNNNAGG	1 cut(s)	163
EcoO109I	RGGNCCY	1 cut(s)	941
EcoRV	GATATC	1 cut(s)	724
EcoT14I	CCWWGG	1 cut(s)	279
EcoT38I	GRGCYC	2 cut(s)	142, 334
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	2 cut(s)	573, 607
FatI	CATG	2 cut(s)	569, 603
Fnu4HI	GCNGC	9 cut(s)	96, 99, 108, 111, 114, 132, 693, 840, 870
FokI	GGATG	1 cut(s)	944
FriOI	GRGCYC	2 cut(s)	142, 334
Fsp4HI	GCNGC	9 cut(s)	96, 99, 108, 111, 114, 132, 693, 840, 870
FspBI	CTAG	3 cut(s)	519, 530, 683
GluI	GCNGC	9 cut(s)	96, 99, 108, 111, 114, 132, 693, 840, 870
GsuI	CTGGAG	3 cut(s)	156, 213, 404
HaeIII	GGCC	3 cut(s)	89, 906, 943
Hin1II	CATG	2 cut(s)	573, 607
HinfI	GANTC	3 cut(s)	260, 346, 526
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	4 cut(s)	208, 255, 351, 582
Hpy188III	TCNNGA	3 cut(s)	383, 497, 530
Hpy8I	GTNNAC	1 cut(s)	151
HpyAV	CCTTC	2 cut(s)	74, 906
HpyCH4III	ACNGT	3 cut(s)	275, 366, 508
HpyCH4IV	ACGT	1 cut(s)	147
HpyCH4V	TGCA	4 cut(s)	395, 427, 692, 842
HpyF10VI	GCNNNNNNNGC	9 cut(s)	11, 95, 104, 107, 113, 119, 128, 137, 878
HpyF3I	CTNAG	5 cut(s)	22, 32, 313, 350, 709
HpySE526I	ACGT	1 cut(s)	147
Hsp92II	CATG	2 cut(s)	573, 607
KpnI	GGTACC	2 cut(s)	173, 279
Kzo9I	GATC	4 cut(s)	25, 586, 702, 971
LmnI	GCTCC	4 cut(s)	137, 145, 194, 385
Lsp1109I	GCAGC	4 cut(s)	85, 107, 704, 826
LweI	GCATC	3 cut(s)	178, 704, 851
MaeI	CTAG	3 cut(s)	519, 530, 683
MaeII	ACGT	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	508, 555
MalI	GATC	4 cut(s)	27, 588, 704, 973
MboI	GATC	4 cut(s)	25, 586, 702, 971
MfeI	CAATTG	1 cut(s)	861
MflI	RGATCY	3 cut(s)	25, 586, 971
MhlI	GDGCHC	3 cut(s)	142, 334, 824
MlsI	TGGCCA	1 cut(s)	906
MluCI	AATT	5 cut(s)	223, 268, 323, 537, 861
MluNI	TGGCCA	1 cut(s)	906
MlyI	GAGTC	1 cut(s)	340
MnlI	CCTC	9 cut(s)	127, 133, 345, 387, 399, 400, 600, 665, 757
Mox20I	TGGCCA	1 cut(s)	906
MroXI	GAANNNNTTC	1 cut(s)	235
MscI	TGGCCA	1 cut(s)	906
MseI	TTAA	4 cut(s)	242, 299, 470, 738
Msp20I	TGGCCA	1 cut(s)	906
MspA1I	CMGCKG	2 cut(s)	98, 134
MunI	CAATTG	1 cut(s)	861
Mva1269I	GAATGC	1 cut(s)	630
MwoI	GCNNNNNNNGC	9 cut(s)	11, 95, 104, 107, 113, 119, 128, 137, 878
NdeII	GATC	4 cut(s)	25, 586, 702, 971
NlaIII	CATG	2 cut(s)	573, 607
NlaIV	GGNNCC	4 cut(s)	171, 277, 387, 880
NmeAIII	GCCGAG	1 cut(s)	65
NmuCI	GTSAC	2 cut(s)	508, 555
NspV	TTCGAA	1 cut(s)	321
PctI	GAATGC	1 cut(s)	630
PdmI	GAANNNNTTC	1 cut(s)	235
PfeI	GAWTC	2 cut(s)	260, 526
PkrI	GCNGC	9 cut(s)	97, 100, 109, 112, 115, 133, 694, 841, 871
PleI	GAGTC	1 cut(s)	340
PpsI	GAGTC	1 cut(s)	340
PshAI	GACNNNNGTC	1 cut(s)	506
Psp124BI	GAGCTC	2 cut(s)	142, 334
PspN4I	GGNNCC	4 cut(s)	171, 277, 387, 880
PspPI	GGNCC	1 cut(s)	941
PstI	CTGCAG	1 cut(s)	429
PsuI	RGATCY	3 cut(s)	25, 586, 971
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	3 cut(s)	171, 277, 368
RsaNI	GTAC	3 cut(s)	170, 276, 367
SacI	GAGCTC	2 cut(s)	142, 334
SaqAI	TTAA	4 cut(s)	242, 299, 470, 738
SatI	GCNGC	9 cut(s)	96, 99, 108, 111, 114, 132, 693, 840, 870
Sau3AI	GATC	4 cut(s)	25, 586, 702, 971
Sau96I	GGNCC	1 cut(s)	941
SbfI	CCTGCAGG	1 cut(s)	429
SchI	GAGTC	1 cut(s)	340
SdaI	CCTGCAGG	1 cut(s)	429
SduI	GDGCHC	3 cut(s)	142, 334, 824
SfaNI	GCATC	3 cut(s)	178, 704, 851
SfcI	CTRYAG	2 cut(s)	15, 425
SfuI	TTCGAA	1 cut(s)	321
SmlI	CTYRAG	1 cut(s)	965
SmoI	CTYRAG	1 cut(s)	965
Sse8387I	CCTGCAGG	1 cut(s)	429
Sse9I	AATT	5 cut(s)	223, 268, 323, 537, 861
SsiI	CCGC	8 cut(s)	5, 105, 108, 111, 114, 120, 132, 869
SspI	AATATT	1 cut(s)	249
SspMI	CTAG	3 cut(s)	519, 530, 683
SstI	GAGCTC	2 cut(s)	142, 334
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	3 cut(s)	275, 366, 508
TaiI	ACGT	1 cut(s)	150
TaqI	TCGA	3 cut(s)	294, 321, 777
TasI	AATT	5 cut(s)	223, 268, 323, 537, 861
TatI	WGTACW	1 cut(s)	366
TauI	GCSGC	5 cut(s)	110, 113, 116, 134, 872
TfiI	GAWTC	2 cut(s)	260, 526
Tru1I	TTAA	4 cut(s)	242, 299, 470, 738
Tru9I	TTAA	4 cut(s)	242, 299, 470, 738
TscAI	CASTG	4 cut(s)	439, 655, 852, 914
TseFI	GTSAC	2 cut(s)	508, 555
TseI	GCWGC	4 cut(s)	95, 98, 692, 839
Tsp45I	GTSAC	2 cut(s)	508, 555
TspDTI	ATGAA	2 cut(s)	273, 786
TspGWI	ACGGA	2 cut(s)	115, 538
TspRI	CASTG	4 cut(s)	439, 655, 852, 914
XagI	CCTNNNNNAGG	1 cut(s)	163
XapI	RAATTY	1 cut(s)	537
XbaI	TCTAGA	1 cut(s)	529
XmnI	GAANNNNTTC	1 cut(s)	235
XspI	CTAG	3 cut(s)	519, 530, 683

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.