RLG00000036679

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0005495
Physical Location & Seq
Reverse (-)
83304828 .. 83305823
996 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036679

Sequence Viewer

Length: 996 bp
ATGGCGGGAATAGCAATTGTCTTAGATCTGCTGAGAAAAAACCCAAGTCTTACAACCCAAAGCCTACACGCTTCTGGGTTTTTCTCCGCTAAAGCAGCTGCTTCTGCCGCCTCCGTCACCGCCGGAGTTCCTTACGTTTACAAGTCCTTCTTCGGTAATTTTAGGGTTCCAGTTGCCTATTGTGATGCTGGAGCAACATTGTCTGAAGATTACACCTCTAATGTACGAAGTGCATCCTTAAAAATATTTCAGAATGAATCTGTGAATTTCGGTACCAAGGAATACACAATCGAGTTAAAGCCTCTATTCTCAGCTTTCGAATTGAGAGCTCTAACTCTGACGACTCTGAGGTCATTTTTGATGTCCTACACCTACTTACCTCTTCTGGAGCCTCGTAGAAACTTGCAAGAAGACGATGATGACTTCCTGCAGGACATTGAAGAAGAAGAACATGTAGATTATGTTGCTCCATTCAAAAAATCACTAAAGAAAATTGCTCGTGATGCTACTGTCTCAACCACTAAACGGATTCTAGAAAGAATTTCTGTTCATTATGTGTCACAGAGAATGGCATGGAAACTTCTGAAAGACACCTCAAAGTCTGCGATGAGGAAAGCTGGAAGAAGAGTGCCAACTTACGTTTTCTTCTTCAGTGTTAGCAAAATGACTATGAGAGGACACTTTCTAGATGTCGCAGCATCTTGGATCGTCTCAGTTGGCATTGATATCTACCTAACTTTTTCTGGAATGACAAACTCTAAAGAGGTGGTTGATGAAATTGATACACCACAAAAGCTTAAACGTCTTGGGAATAAGGTTTGGGGCACTACTATCAGGTGTGGTGCATCACTGATTTTTGCTTCGATTGGGGCAGGTATTGGTGCCACTCTTTTTCGCCCTTCAACTGGCCTGTGGATTGGTCGTATTCTGGGAGATGTGGCCGGGCCTATTATTGTCTCGTATTGCCTTGAGAAGTCTTTCCATGCAAAACTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

332

Amino Acids

36.76

Weight (kDa)

9.4

Isoelectric Point (pI)

34.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 349
Acc36I ACCTGC 1 cut(s) 863
Acc65I GGTACC 1 cut(s) 272
AccB1I GGYRCC 2 cut(s) 272, 881
AciI CCGC 4 cut(s) 5, 87, 108, 120
AclWI GGATC 1 cut(s) 713
AcoI YGGCCR 1 cut(s) 939
AcsI RAATTY 2 cut(s) 265, 540
AcuI CTGAAG 2 cut(s) 225, 634
AfaI GTAC 2 cut(s) 225, 274
AfiI CCNNNNNNNGG 2 cut(s) 525, 905
AflIII ACRYGT 1 cut(s) 451
AgsI TTSAA 3 cut(s) 440, 475, 903
AluBI AGCT 5 cut(s) 98, 314, 329, 617, 796
AluI AGCT 5 cut(s) 98, 314, 329, 617, 796
Alw21I GWGCWC 1 cut(s) 331
Alw26I GTCTC 3 cut(s) 517, 715, 961
AlwI GGATC 1 cut(s) 713
AoxI GGCC 3 cut(s) 907, 939, 944
ApeKI GCWGC 3 cut(s) 95, 98, 695
ApoI RAATTY 2 cut(s) 265, 540
Asp700I GAANNNNTTC 1 cut(s) 977
Asp718I GGTACC 1 cut(s) 272
AspS9I GGNCC 1 cut(s) 944
AsuC2I CCSGG 1 cut(s) 943
AsuHPI GGTGA 1 cut(s) 109
AsuII TTCGAA 1 cut(s) 318
BaeGI GKGCMC 1 cut(s) 827
BanI GGYRCC 2 cut(s) 272, 881
BanII GRGCYC 1 cut(s) 331
BauI CACGAG 1 cut(s) 498
BbsI GAAGAC 1 cut(s) 417
Bbv12I GWGCWC 1 cut(s) 331
BbvI GCAGC 3 cut(s) 85, 107, 707
BcnI CCSGG 1 cut(s) 943
BcoDI GTCTC 3 cut(s) 517, 715, 961
BfaI CTAG 2 cut(s) 533, 686
BfmI CTRYAG 1 cut(s) 428
BfuAI ACCTGC 1 cut(s) 863
BglII AGATCT 1 cut(s) 25
BisI GCNGC 4 cut(s) 96, 99, 108, 696
BlsI GCNGC 4 cut(s) 97, 100, 109, 697
Bme1390I CCNGG 1 cut(s) 943
BmgT120I GGNCC 1 cut(s) 944
BmiI GGNNCC 4 cut(s) 168, 274, 390, 883
BmrFI CCNGG 1 cut(s) 943
BmsI GCATC 5 cut(s) 175, 242, 493, 707, 854
BpiI GAAGAC 1 cut(s) 417
BpmI CTGGAG 2 cut(s) 210, 407
Bpu14I TTCGAA 1 cut(s) 318
BpuEI CTTGAG 1 cut(s) 989
BpuMI CCSGG 1 cut(s) 943
BsaJI CCNNGG 1 cut(s) 276
Bsc4I CCNNNNNNNGG 2 cut(s) 525, 905
Bse1I ACTGG 2 cut(s) 170, 910
BseDI CCNNGG 1 cut(s) 276
BseGI GGATG 1 cut(s) 233
BseLI CCNNNNNNNGG 2 cut(s) 525, 905
BseMII CTCAG 4 cut(s) 23, 324, 338, 726
BseNI ACTGG 2 cut(s) 170, 910
BseSI GKGCMC 1 cut(s) 827
BseXI GCAGC 3 cut(s) 85, 107, 707
BshFI GGCC 3 cut(s) 909, 941, 946
BshNI GGYRCC 2 cut(s) 272, 881
BsiHKAI GWGCWC 1 cut(s) 331
BsiSI CCGG 2 cut(s) 123, 942
BslI CCNNNNNNNGG 2 cut(s) 525, 905
BsmAI GTCTC 3 cut(s) 517, 715, 961
BsmBI CGTCTC 1 cut(s) 715
BsnI GGCC 3 cut(s) 909, 941, 946
Bsp119I TTCGAA 1 cut(s) 318
Bsp1286I GDGCHC 2 cut(s) 331, 827
Bsp143I GATC 2 cut(s) 25, 705
BspACI CCGC 4 cut(s) 5, 87, 108, 120
BspANI GGCC 3 cut(s) 909, 941, 946
BspCNI CTCAG 4 cut(s) 24, 323, 339, 725
BspLI GGNNCC 4 cut(s) 168, 274, 390, 883
BspMAI CTGCAG 1 cut(s) 432
BspMI ACCTGC 1 cut(s) 863
BspPI GGATC 1 cut(s) 713
BspT104I TTCGAA 1 cut(s) 318
BspT107I GGYRCC 2 cut(s) 272, 881
BsrI ACTGG 2 cut(s) 170, 910
BssECI CCNNGG 1 cut(s) 276
BssMI GATC 2 cut(s) 25, 705
BssSI CACGAG 1 cut(s) 498
BssT1I CCWWGG 1 cut(s) 276
Bst2BI CACGAG 1 cut(s) 498
Bst4CI ACNGT 1 cut(s) 511
Bst6I CTCTTC 2 cut(s) 387, 619
BstBI TTCGAA 1 cut(s) 318
BstDEI CTNAG 5 cut(s) 22, 32, 310, 347, 712
BstF5I GGATG 1 cut(s) 233
BstKTI GATC 2 cut(s) 28, 708
BstMAI GTCTC 3 cut(s) 517, 715, 961
BstMBI GATC 2 cut(s) 25, 705
BstMWI GCNNNNNNNGC 5 cut(s) 11, 95, 104, 107, 503
BstNSI RCATGY 1 cut(s) 455
BstSCI CCNGG 1 cut(s) 941
BstSFI CTRYAG 1 cut(s) 428
BstSLI GKGCMC 1 cut(s) 827
BstV1I GCAGC 3 cut(s) 85, 107, 707
BstV2I GAAGAC 1 cut(s) 417
BstX2I RGATCY 1 cut(s) 25
BstYI RGATCY 1 cut(s) 25
BsuRI GGCC 3 cut(s) 909, 941, 946
BtgZI GCGATG 1 cut(s) 620
BtsCI GGATG 1 cut(s) 233
BtsIMutI CAGTG 2 cut(s) 658, 848
BveI ACCTGC 1 cut(s) 863
Cfr13I GGNCC 1 cut(s) 944
Csp6I GTAC 2 cut(s) 224, 273
CviAII CATG 3 cut(s) 452, 573, 983
CviQI GTAC 2 cut(s) 224, 273
DdeI CTNAG 5 cut(s) 22, 32, 310, 347, 712
DpnI GATC 2 cut(s) 27, 707
DpnII GATC 2 cut(s) 25, 705
DrdI GACNNNNNNGTC 1 cut(s) 349
DseDI GACNNNNNNGTC 1 cut(s) 349
EaeI YGGCCR 1 cut(s) 939
Eam1104I CTCTTC 2 cut(s) 387, 619
EarI CTCTTC 2 cut(s) 387, 619
Ecl136II GAGCTC 1 cut(s) 329
Eco130I CCWWGG 1 cut(s) 276
Eco24I GRGCYC 1 cut(s) 331
Eco32I GATATC 1 cut(s) 727
Eco53kI GAGCTC 1 cut(s) 329
Eco57I CTGAAG 2 cut(s) 225, 634
EcoICRI GAGCTC 1 cut(s) 329
EcoRV GATATC 1 cut(s) 727
EcoT14I CCWWGG 1 cut(s) 276
EcoT38I GRGCYC 1 cut(s) 331
ErhI CCWWGG 1 cut(s) 276
Esp3I CGTCTC 1 cut(s) 715
FaeI CATG 3 cut(s) 455, 576, 986
FaiI YATR 6 cut(s) 453, 462, 555, 574, 671, 984
FalI AAGNNNNNCTT 2 cut(s) 134, 166
FatI CATG 3 cut(s) 451, 572, 982
Fnu4HI GCNGC 4 cut(s) 96, 99, 108, 696
FokI GGATG 1 cut(s) 220
FriOI GRGCYC 1 cut(s) 331
Fsp4HI GCNGC 4 cut(s) 96, 99, 108, 696
FspBI CTAG 2 cut(s) 533, 686
GluI GCNGC 4 cut(s) 96, 99, 108, 696
GsuI CTGGAG 2 cut(s) 210, 407
HaeIII GGCC 3 cut(s) 909, 941, 946
HapII CCGG 2 cut(s) 123, 942
Hin1II CATG 3 cut(s) 455, 576, 986
HindIII AAGCTT 1 cut(s) 794
HinfI GANTC 3 cut(s) 257, 343, 529
HpaII CCGG 2 cut(s) 123, 942
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 5 cut(s) 205, 252, 339, 348, 585
Hpy188III TCNNGA 5 cut(s) 386, 500, 533, 686, 744
Hpy8I GTNNAC 1 cut(s) 139
HpyAV CCTTC 2 cut(s) 157, 909
HpyCH4III ACNGT 1 cut(s) 511
HpyCH4IV ACGT 3 cut(s) 135, 639, 802
HpyCH4V TGCA 5 cut(s) 233, 406, 430, 845, 986
HpyF10VI GCNNNNNNNGC 5 cut(s) 11, 95, 104, 107, 503
HpyF3I CTNAG 5 cut(s) 22, 32, 310, 347, 712
HpySE526I ACGT 3 cut(s) 135, 639, 802
Hsp92II CATG 3 cut(s) 455, 576, 986
KpnI GGTACC 1 cut(s) 276
Kzo9I GATC 2 cut(s) 25, 705
LmnI GCTCC 3 cut(s) 191, 388, 472
Lsp1109I GCAGC 3 cut(s) 85, 107, 707
LweI GCATC 5 cut(s) 175, 242, 493, 707, 854
MaeI CTAG 2 cut(s) 533, 686
MaeII ACGT 3 cut(s) 135, 639, 802
MaeIII GTNAC 2 cut(s) 115, 558
MalI GATC 2 cut(s) 27, 707
MboI GATC 2 cut(s) 25, 705
MfeI CAATTG 1 cut(s) 15
MflI RGATCY 1 cut(s) 25
MhlI GDGCHC 2 cut(s) 331, 827
MluCI AATT 7 cut(s) 15, 157, 265, 320, 492, 540, 777
MlyI GAGTC 1 cut(s) 337
MroXI GAANNNNTTC 1 cut(s) 977
MseI TTAA 3 cut(s) 239, 296, 798
MspA1I CMGCKG 1 cut(s) 98
MspI CCGG 2 cut(s) 123, 942
MspR9I CCNGG 1 cut(s) 943
MunI CAATTG 1 cut(s) 15
MwoI GCNNNNNNNGC 5 cut(s) 11, 95, 104, 107, 503
NciI CCSGG 1 cut(s) 943
NdeII GATC 2 cut(s) 25, 705
NlaIII CATG 3 cut(s) 455, 576, 986
NlaIV GGNNCC 4 cut(s) 168, 274, 390, 883
NmuCI GTSAC 2 cut(s) 115, 558
NspI RCATGY 1 cut(s) 455
NspV TTCGAA 1 cut(s) 318
PciI ACATGT 1 cut(s) 451
PdmI GAANNNNTTC 1 cut(s) 977
PfeI GAWTC 2 cut(s) 257, 529
PkrI GCNGC 4 cut(s) 97, 100, 109, 697
PleI GAGTC 1 cut(s) 337
PpsI GAGTC 1 cut(s) 337
PscI ACATGT 1 cut(s) 451
Psp124BI GAGCTC 1 cut(s) 331
PspN4I GGNNCC 4 cut(s) 168, 274, 390, 883
PspPI GGNCC 1 cut(s) 944
PstI CTGCAG 1 cut(s) 432
PsuI RGATCY 1 cut(s) 25
PvuII CAGCTG 1 cut(s) 98
RsaI GTAC 2 cut(s) 225, 274
RsaNI GTAC 2 cut(s) 224, 273
SacI GAGCTC 1 cut(s) 331
SaqAI TTAA 3 cut(s) 239, 296, 798
SatI GCNGC 4 cut(s) 96, 99, 108, 696
Sau3AI GATC 2 cut(s) 25, 705
Sau96I GGNCC 1 cut(s) 944
SbfI CCTGCAGG 1 cut(s) 432
SchI GAGTC 1 cut(s) 337
ScrFI CCNGG 1 cut(s) 943
SdaI CCTGCAGG 1 cut(s) 432
SduI GDGCHC 2 cut(s) 331, 827
SfaNI GCATC 5 cut(s) 175, 242, 493, 707, 854
SfcI CTRYAG 1 cut(s) 428
SfuI TTCGAA 1 cut(s) 318
SmlI CTYRAG 1 cut(s) 968
SmoI CTYRAG 1 cut(s) 968
Sse8387I CCTGCAGG 1 cut(s) 432
Sse9I AATT 7 cut(s) 15, 157, 265, 320, 492, 540, 777
SsiI CCGC 4 cut(s) 5, 87, 108, 120
SspI AATATT 1 cut(s) 246
SspMI CTAG 2 cut(s) 533, 686
SstI GAGCTC 1 cut(s) 331
StyD4I CCNGG 1 cut(s) 941
StyI CCWWGG 1 cut(s) 276
TaaI ACNGT 1 cut(s) 511
TaiI ACGT 3 cut(s) 138, 642, 805
TaqI TCGA 3 cut(s) 291, 318, 863
TasI AATT 7 cut(s) 15, 157, 265, 320, 492, 540, 777
TauI GCSGC 1 cut(s) 110
TfiI GAWTC 2 cut(s) 257, 529
Tru1I TTAA 3 cut(s) 239, 296, 798
Tru9I TTAA 3 cut(s) 239, 296, 798
TscAI CASTG 2 cut(s) 658, 855
TseFI GTSAC 2 cut(s) 115, 558
TseI GCWGC 3 cut(s) 95, 98, 695
Tsp45I GTSAC 2 cut(s) 115, 558
TspDTI ATGAA 3 cut(s) 270, 539, 789
TspGWI ACGGA 2 cut(s) 103, 541
TspRI CASTG 2 cut(s) 658, 855
XapI RAATTY 2 cut(s) 265, 540
XbaI TCTAGA 2 cut(s) 532, 685
XceI RCATGY 1 cut(s) 455
XmnI GAANNNNTTC 1 cut(s) 977
XspI CTAG 2 cut(s) 533, 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.