Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0005495

Physical Location & Seq

Genomic Coordinates Forward (+)

6496277 .. 6501256

Gene Structure 4980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00004720.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1152 bp

ATGGCGGGAATAGATATTGTCTTAGATCTGCTGAGAAAAAACCCAAGTCTTACAACCCAAAGCCTACACGCTTCTGGGTTTTTCTCTGCTAAAGCAGCTGCTTCTGCCGCCGCCGCGTCAGTCTCCGCCGGAGCTCCTAACGTTTACAAGTCCTTCTTCAGTAATTTTAGGGTTCCAGTTGCCTTTTGTGATGCTGGAGCAACATTGTCTGAAGATTACACCTCTAATATTGTACGAAGTGCATCCTTAAAAATATTTCAGAATAAATCTGTGAATTTCGGTACCAAGGAATACACAATCGAGTTAAAGCCTCTATTCTCAGCTTTCGAATTGAGAGCTCTAACTCTGACGACTCTGAGGTCATTTTTGATGTTCTACTTACCTCTTCTGGAGCCTCGTAGAAACTTGCAAGAGGACGATGATGACTTCCTGCAGGACACTGAAGAAGAAGAACATGTAGATTATGTTGCTCCATTCAAAAAATCACTAAAGAAAATTGCTCGTGATGCTACTGTCTCAACCACTAAACGGATTCTAGAAAGAATTTCTGTTCACTATGTGTCACAGAGAATGGCATGGAAACTTCTGAAAGATACCTCAAAGTCTGCGATGAGGAAAGCTGGAAGAAGAATGCCAACTTACGTTTTCTTCTTCAGTGTTAGCAAAATGACTATGAGAGGACACTTTCTAGATGTTGCAGCATCTTGGATCATCTCAGTTGGCATTGATATCTACCGAACTTTTTCTGGAATGACAAACTCTAAAGAAGTGGTTGATGAAATTGATACACCACAAAAGCTTAAACGTCTTGGGAGTAAGGTTTGGGGCACTACTATCAGGTGTGGTGCATCACTGATTTTTGCTTCGATTGGGGCAGGTATTGGCGCCACTCTTTTTCGCCCTTCAACTGGCCAGTGGATTGGTCGTATTCTGGGAGATGTGGCCGGGCCTATTATTAACATTACGTTCTCTCGCTTTCTCGGAGAGGAAGTCGAAAGTGCCGCGGCCCATTCGGTCGAGTTTCGAGTAATGTGGCCGATACGGAACAATGACAATCGAAGTGTAACTTCTTCGCTACTTCTTTGTCGGGGTCTTCCTTCACCTCGGTTCACTAAGCTACAACCGAGATCGGTTGCGAGTTGGCCGCGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

383

Amino Acids

42.63

Weight (kDa)

9.78

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005495)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G55610 AT5G55610
fragaria_vesca	FvH4_3g29460
malus_domestica	MD00G1099100.v1.1 MD11G1201600.v1.1
prunus_persica	Prupe.4G240000_v2.0.a1
pyrus_communis	pycom03g13850 pycom11g17410
rosa_chinensis	RchiOBHm_Chr5g0053951 RchiOBHm_Chr5g0077271
rosa_laevigata	RLG00000034912 RLG00000036679
rosa_multiflora	Rmu_sc0008383.1_g000005 Rmu_sc0023670.1_g000003
rosa_roxburghii	Rroxscaffold_1G00004720 Rroxscaffold_1G00026690
rosa_rugosa	Rorug05G0284700 Rorug05G0453200
rosa_samantha	Rh5AG354000 Rh5AG508300 Rh5BG365800 Rh5BG529500 Rh5CG390600 Rh5CG554000 Rh5DG380700 Rh5DG542000
rosa_wichuraiana	Rw0G002080 Rw5G033370 Rw5G046930

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	358
Acc36I	ACCTGC	1 cut(s)	866
Acc65I	GGTACC	1 cut(s)	281
AccB1I	GGYRCC	2 cut(s)	281, 884
AccII	CGCG	3 cut(s)	116, 1004, 1147
AciI	CCGC	8 cut(s)	5, 108, 111, 114, 126, 1002, 1004, 1145
AclI	AACGTT	1 cut(s)	141
AclWI	GGATC	1 cut(s)	716
AcoI	YGGCCR	4 cut(s)	910, 942, 1034, 1142
AcsI	RAATTY	2 cut(s)	274, 543
AcuI	CTGAAG	4 cut(s)	142, 231, 462, 637
AcyI	GRCGYC	1 cut(s)	885
AdeI	CACNNNGTG	1 cut(s)	559
AfaI	GTAC	2 cut(s)	234, 283
AfiI	CCNNNNNNNGG	2 cut(s)	528, 908
AflIII	ACRYGT	1 cut(s)	454
AgsI	TTSAA	2 cut(s)	478, 906
AluBI	AGCT	7 cut(s)	98, 134, 323, 338, 620, 799, 1117
AluI	AGCT	7 cut(s)	98, 134, 323, 338, 620, 799, 1117
Alw21I	GWGCWC	2 cut(s)	136, 340
Alw26I	GTCTC	2 cut(s)	127, 520
AlwI	GGATC	1 cut(s)	716
AoxI	GGCC	6 cut(s)	910, 942, 947, 1005, 1034, 1142
ApeKI	GCWGC	3 cut(s)	95, 98, 698
ApoI	RAATTY	2 cut(s)	274, 543
Asp700I	GAANNNNTTC	1 cut(s)	742
Asp718I	GGTACC	1 cut(s)	281
AspLEI	GCGC	1 cut(s)	887
AspS9I	GGNCC	2 cut(s)	947, 1006
AsuC2I	CCSGG	1 cut(s)	946
AsuHPI	GGTGA	1 cut(s)	1092
AsuII	TTCGAA	1 cut(s)	327
BaeGI	GKGCMC	1 cut(s)	830
BalI	TGGCCA	1 cut(s)	912
BanI	GGYRCC	2 cut(s)	281, 884
BanII	GRGCYC	2 cut(s)	136, 340
BauI	CACGAG	1 cut(s)	501
BbsI	GAAGAC	1 cut(s)	1085
Bbv12I	GWGCWC	2 cut(s)	136, 340
BbvI	GCAGC	3 cut(s)	85, 107, 710
BcnI	CCSGG	1 cut(s)	946
BcoDI	GTCTC	2 cut(s)	127, 520
BfaI	CTAG	2 cut(s)	536, 689
BfmI	CTRYAG	1 cut(s)	431
BfoI	RGCGCY	1 cut(s)	888
BfuAI	ACCTGC	1 cut(s)	866
BglII	AGATCT	1 cut(s)	25
BisI	GCNGC	9 cut(s)	96, 99, 108, 111, 114, 699, 1002, 1005, 1145
BlsI	GCNGC	9 cut(s)	97, 100, 109, 112, 115, 700, 1003, 1006, 1146
Bme1390I	CCNGG	1 cut(s)	946
BmgT120I	GGNCC	2 cut(s)	947, 1006
BmiI	GGNNCC	4 cut(s)	174, 283, 393, 886
BmrFI	CCNGG	1 cut(s)	946
BmsI	GCATC	5 cut(s)	181, 251, 496, 710, 857
BpiI	GAAGAC	1 cut(s)	1085
BpmI	CTGGAG	2 cut(s)	216, 410
Bpu14I	TTCGAA	1 cut(s)	327
BpuMI	CCSGG	1 cut(s)	946
BsaHI	GRCGYC	1 cut(s)	885
BsaJI	CCNNGG	3 cut(s)	285, 1002, 1103
BsaXI	ACNNNNNCTCC	2 cut(s)	975, 1005
Bsc4I	CCNNNNNNNGG	2 cut(s)	528, 908
Bse1I	ACTGG	3 cut(s)	176, 913, 913
BseDI	CCNNGG	3 cut(s)	285, 1002, 1103
BseGI	GGATG	1 cut(s)	242
BseLI	CCNNNNNNNGG	2 cut(s)	528, 908
BseMII	CTCAG	4 cut(s)	23, 333, 347, 729
BseNI	ACTGG	3 cut(s)	176, 913, 913
BseSI	GKGCMC	1 cut(s)	830
BseXI	GCAGC	3 cut(s)	85, 107, 710
Bsh1236I	CGCG	3 cut(s)	116, 1004, 1147
Bsh1285I	CGRYCG	1 cut(s)	1017
BshFI	GGCC	6 cut(s)	912, 944, 949, 1007, 1036, 1144
BshNI	GGYRCC	2 cut(s)	281, 884
BsiEI	CGRYCG	1 cut(s)	1017
BsiHKAI	GWGCWC	2 cut(s)	136, 340
BsiSI	CCGG	2 cut(s)	129, 945
BslI	CCNNNNNNNGG	2 cut(s)	528, 908
BsmAI	GTCTC	2 cut(s)	127, 520
BsmI	GAATGC	1 cut(s)	636
BsnI	GGCC	6 cut(s)	912, 944, 949, 1007, 1036, 1144
Bsp119I	TTCGAA	1 cut(s)	327
Bsp1286I	GDGCHC	3 cut(s)	136, 340, 830
Bsp143I	GATC	3 cut(s)	25, 708, 1127
BspACI	CCGC	8 cut(s)	5, 108, 111, 114, 126, 1002, 1004, 1145
BspANI	GGCC	6 cut(s)	912, 944, 949, 1007, 1036, 1144
BspCNI	CTCAG	4 cut(s)	24, 332, 348, 728
BspFNI	CGCG	3 cut(s)	116, 1004, 1147
BspLI	GGNNCC	4 cut(s)	174, 283, 393, 886
BspMAI	CTGCAG	1 cut(s)	435
BspMI	ACCTGC	1 cut(s)	866
BspPI	GGATC	1 cut(s)	716
BspT104I	TTCGAA	1 cut(s)	327
BspT107I	GGYRCC	2 cut(s)	281, 884
BsrI	ACTGG	3 cut(s)	176, 913, 913
BssECI	CCNNGG	3 cut(s)	285, 1002, 1103
BssMI	GATC	3 cut(s)	25, 708, 1127
BssNI	GRCGYC	1 cut(s)	885
BssSI	CACGAG	1 cut(s)	501
BssT1I	CCWWGG	1 cut(s)	285
Bst2BI	CACGAG	1 cut(s)	501
Bst4CI	ACNGT	1 cut(s)	514
Bst6I	CTCTTC	1 cut(s)	390
BstACI	GRCGYC	1 cut(s)	885
BstBI	TTCGAA	1 cut(s)	327
BstDEI	CTNAG	6 cut(s)	22, 32, 319, 356, 715, 1113
BstDSI	CCRYGG	1 cut(s)	1002
BstF5I	GGATG	1 cut(s)	242
BstFNI	CGCG	3 cut(s)	116, 1004, 1147
BstH2I	RGCGCY	1 cut(s)	888
BstHHI	GCGC	1 cut(s)	887
BstKTI	GATC	3 cut(s)	28, 711, 1130
BstMAI	GTCTC	2 cut(s)	127, 520
BstMBI	GATC	3 cut(s)	25, 708, 1127
BstMCI	CGRYCG	1 cut(s)	1017
BstMWI	GCNNNNNNNGC	5 cut(s)	95, 104, 107, 113, 506
BstNSI	RCATGY	1 cut(s)	458
BstSCI	CCNGG	1 cut(s)	944
BstSFI	CTRYAG	1 cut(s)	431
BstSLI	GKGCMC	1 cut(s)	830
BstUI	CGCG	3 cut(s)	116, 1004, 1147
BstV1I	GCAGC	3 cut(s)	85, 107, 710
BstV2I	GAAGAC	1 cut(s)	1085
BstX2I	RGATCY	1 cut(s)	25
BstXI	CCANNNNNNTGG	1 cut(s)	920
BstYI	RGATCY	1 cut(s)	25
BsuRI	GGCC	6 cut(s)	912, 944, 949, 1007, 1036, 1144
BtgI	CCRYGG	1 cut(s)	1002
BtgZI	GCGATG	1 cut(s)	623
BtsCI	GGATG	1 cut(s)	242
BtsIMutI	CAGTG	4 cut(s)	438, 661, 851, 920
BveI	ACCTGC	1 cut(s)	866
CfoI	GCGC	1 cut(s)	887
Cfr13I	GGNCC	2 cut(s)	947, 1006
Cfr42I	CCGCGG	1 cut(s)	1005
CseI	GACGC	1 cut(s)	105
Csp6I	GTAC	2 cut(s)	233, 282
CviAII	CATG	2 cut(s)	455, 576
CviQI	GTAC	2 cut(s)	233, 282
DdeI	CTNAG	6 cut(s)	22, 32, 319, 356, 715, 1113
DinI	GGCGCC	1 cut(s)	886
DpnI	GATC	3 cut(s)	27, 710, 1129
DpnII	GATC	3 cut(s)	25, 708, 1127
DraIII	CACNNNGTG	1 cut(s)	559
DrdI	GACNNNNNNGTC	1 cut(s)	358
DseDI	GACNNNNNNGTC	1 cut(s)	358
EaeI	YGGCCR	4 cut(s)	910, 942, 1034, 1142
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
EciI	GGCGGA	1 cut(s)	115
Ecl136II	GAGCTC	2 cut(s)	134, 338
Eco130I	CCWWGG	1 cut(s)	285
Eco24I	GRGCYC	2 cut(s)	136, 340
Eco32I	GATATC	1 cut(s)	730
Eco53kI	GAGCTC	2 cut(s)	134, 338
Eco57I	CTGAAG	4 cut(s)	142, 231, 462, 637
EcoICRI	GAGCTC	2 cut(s)	134, 338
EcoRV	GATATC	1 cut(s)	730
EcoT14I	CCWWGG	1 cut(s)	285
EcoT38I	GRGCYC	2 cut(s)	136, 340
EgeI	GGCGCC	1 cut(s)	886
EheI	GGCGCC	1 cut(s)	886
ErhI	CCWWGG	1 cut(s)	285
FaeI	CATG	2 cut(s)	458, 579
FaiI	YATR	5 cut(s)	456, 465, 558, 577, 674
FalI	AAGNNNNNCTT	4 cut(s)	140, 172, 1051, 1083
FatI	CATG	2 cut(s)	454, 575
Fnu4HI	GCNGC	9 cut(s)	96, 99, 108, 111, 114, 699, 1002, 1005, 1145
FokI	GGATG	1 cut(s)	229
FriOI	GRGCYC	2 cut(s)	136, 340
Fsp4HI	GCNGC	9 cut(s)	96, 99, 108, 111, 114, 699, 1002, 1005, 1145
FspBI	CTAG	2 cut(s)	536, 689
GlaI	GCGC	1 cut(s)	886
GluI	GCNGC	9 cut(s)	96, 99, 108, 111, 114, 699, 1002, 1005, 1145
GsuI	CTGGAG	2 cut(s)	216, 410
HaeII	RGCGCY	1 cut(s)	888
HaeIII	GGCC	6 cut(s)	912, 944, 949, 1007, 1036, 1144
HapII	CCGG	2 cut(s)	129, 945
HgaI	GACGC	1 cut(s)	105
HhaI	GCGC	1 cut(s)	887
Hin1I	GRCGYC	1 cut(s)	885
Hin1II	CATG	2 cut(s)	458, 579
Hin6I	GCGC	1 cut(s)	885
HinP1I	GCGC	1 cut(s)	885
HindIII	AAGCTT	1 cut(s)	797
HinfI	GANTC	2 cut(s)	352, 532
HpaII	CCGG	2 cut(s)	129, 945
HphI	GGTGA	1 cut(s)	1092
Hpy166II	GTNNAC	3 cut(s)	145, 553, 1110
Hpy188I	TCNGA	6 cut(s)	211, 261, 348, 357, 588, 983
Hpy188III	TCNNGA	5 cut(s)	389, 503, 536, 689, 747
Hpy8I	GTNNAC	3 cut(s)	145, 553, 1110
HpyAV	CCTTC	3 cut(s)	163, 912, 1107
HpyCH4III	ACNGT	1 cut(s)	514
HpyCH4IV	ACGT	4 cut(s)	141, 642, 805, 965
HpyCH4V	TGCA	5 cut(s)	242, 409, 433, 698, 848
HpyF10VI	GCNNNNNNNGC	5 cut(s)	95, 104, 107, 113, 506
HpyF3I	CTNAG	6 cut(s)	22, 32, 319, 356, 715, 1113
HpySE526I	ACGT	4 cut(s)	141, 642, 805, 965
Hsp92I	GRCGYC	1 cut(s)	885
Hsp92II	CATG	2 cut(s)	458, 579
HspAI	GCGC	1 cut(s)	885
KasI	GGCGCC	1 cut(s)	884
KpnI	GGTACC	1 cut(s)	285
KspI	CCGCGG	1 cut(s)	1005
Kzo9I	GATC	3 cut(s)	25, 708, 1127
LmnI	GCTCC	5 cut(s)	131, 139, 197, 391, 475
Lsp1109I	GCAGC	3 cut(s)	85, 107, 710
LweI	GCATC	5 cut(s)	181, 251, 496, 710, 857
MaeI	CTAG	2 cut(s)	536, 689
MaeII	ACGT	4 cut(s)	141, 642, 805, 965
MaeIII	GTNAC	2 cut(s)	561, 1063
MalI	GATC	3 cut(s)	27, 710, 1129
MboI	GATC	3 cut(s)	25, 708, 1127
MflI	RGATCY	1 cut(s)	25
MhlI	GDGCHC	3 cut(s)	136, 340, 830
MlsI	TGGCCA	1 cut(s)	912
MluCI	AATT	6 cut(s)	163, 274, 329, 495, 543, 780
MluNI	TGGCCA	1 cut(s)	912
Mly113I	GGCGCC	1 cut(s)	885
MlyI	GAGTC	1 cut(s)	346
Mox20I	TGGCCA	1 cut(s)	912
MroXI	GAANNNNTTC	1 cut(s)	742
MscI	TGGCCA	1 cut(s)	912
MseI	TTAA	4 cut(s)	248, 305, 801, 957
Msp20I	TGGCCA	1 cut(s)	912
MspA1I	CMGCKG	2 cut(s)	98, 1004
MspI	CCGG	2 cut(s)	129, 945
MspR9I	CCNGG	1 cut(s)	946
Mva1269I	GAATGC	1 cut(s)	636
MvnI	CGCG	3 cut(s)	116, 1004, 1147
MwoI	GCNNNNNNNGC	5 cut(s)	95, 104, 107, 113, 506
NarI	GGCGCC	1 cut(s)	885
NciI	CCSGG	1 cut(s)	946
NdeII	GATC	3 cut(s)	25, 708, 1127
NlaIII	CATG	2 cut(s)	458, 579
NlaIV	GGNNCC	4 cut(s)	174, 283, 393, 886
NmuCI	GTSAC	1 cut(s)	561
NspI	RCATGY	1 cut(s)	458
NspV	TTCGAA	1 cut(s)	327
PciI	ACATGT	1 cut(s)	454
PctI	GAATGC	1 cut(s)	636
PdmI	GAANNNNTTC	1 cut(s)	742
PfeI	GAWTC	1 cut(s)	532
PkrI	GCNGC	9 cut(s)	97, 100, 109, 112, 115, 700, 1003, 1006, 1146
PleI	GAGTC	1 cut(s)	346
PluTI	GGCGCC	1 cut(s)	888
PpsI	GAGTC	1 cut(s)	346
PscI	ACATGT	1 cut(s)	454
Psp124BI	GAGCTC	2 cut(s)	136, 340
Psp1406I	AACGTT	1 cut(s)	141
PspN4I	GGNNCC	4 cut(s)	174, 283, 393, 886
PspPI	GGNCC	2 cut(s)	947, 1006
PstI	CTGCAG	1 cut(s)	435
PsuI	RGATCY	1 cut(s)	25
PvuII	CAGCTG	1 cut(s)	98
RsaI	GTAC	2 cut(s)	234, 283
RsaNI	GTAC	2 cut(s)	233, 282
SacI	GAGCTC	2 cut(s)	136, 340
SacII	CCGCGG	1 cut(s)	1005
SaqAI	TTAA	4 cut(s)	248, 305, 801, 957
SatI	GCNGC	9 cut(s)	96, 99, 108, 111, 114, 699, 1002, 1005, 1145
Sau3AI	GATC	3 cut(s)	25, 708, 1127
Sau96I	GGNCC	2 cut(s)	947, 1006
SbfI	CCTGCAGG	1 cut(s)	435
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	1 cut(s)	946
SdaI	CCTGCAGG	1 cut(s)	435
SduI	GDGCHC	3 cut(s)	136, 340, 830
SfaNI	GCATC	5 cut(s)	181, 251, 496, 710, 857
SfcI	CTRYAG	1 cut(s)	431
SfoI	GGCGCC	1 cut(s)	886
Sfr303I	CCGCGG	1 cut(s)	1005
SfuI	TTCGAA	1 cut(s)	327
SgrBI	CCGCGG	1 cut(s)	1005
Sse8387I	CCTGCAGG	1 cut(s)	435
Sse9I	AATT	6 cut(s)	163, 274, 329, 495, 543, 780
SsiI	CCGC	8 cut(s)	5, 108, 111, 114, 126, 1002, 1004, 1145
SspDI	GGCGCC	1 cut(s)	884
SspI	AATATT	2 cut(s)	229, 255
SspMI	CTAG	2 cut(s)	536, 689
SstI	GAGCTC	2 cut(s)	136, 340
StyD4I	CCNGG	1 cut(s)	944
StyI	CCWWGG	1 cut(s)	285
TaaI	ACNGT	1 cut(s)	514
TaiI	ACGT	4 cut(s)	144, 645, 808, 968
TaqI	TCGA	7 cut(s)	300, 327, 866, 993, 1017, 1024, 1057
TaqII	GACCGA	1 cut(s)	1003
TasI	AATT	6 cut(s)	163, 274, 329, 495, 543, 780
TauI	GCSGC	6 cut(s)	110, 113, 116, 1004, 1007, 1147
TfiI	GAWTC	1 cut(s)	532
Tru1I	TTAA	4 cut(s)	248, 305, 801, 957
Tru9I	TTAA	4 cut(s)	248, 305, 801, 957
TscAI	CASTG	4 cut(s)	445, 661, 858, 920
TseFI	GTSAC	1 cut(s)	561
TseI	GCWGC	3 cut(s)	95, 98, 698
Tsp45I	GTSAC	1 cut(s)	561
TspDTI	ATGAA	1 cut(s)	792
TspGWI	ACGGA	2 cut(s)	544, 1057
TspRI	CASTG	4 cut(s)	445, 661, 858, 920
XapI	RAATTY	2 cut(s)	274, 543
XbaI	TCTAGA	2 cut(s)	535, 688
XceI	RCATGY	1 cut(s)	458
XmnI	GAANNNNTTC	1 cut(s)	742
XspI	CTAG	2 cut(s)	536, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.