FvH4_3g31921

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0011634
Physical Location & Seq
Forward (+)
26990597 .. 26991863
1267 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g31921.t1

Sequence Viewer

Length: 993 bp
ATGGGTTCTAAAAATCATGCATATTTTACCAATCTCCTCACCACTCCAGTACTTGATGACTCTTTGATCGAAAACGATGGCTTAAACAATAATAATGGTTACATGTCTTCTCAAGTACCTGCTATGACATCTGACATACCTCCTCAAAATCAACCATCTAAAAAGAAAAGAGAACGAGCTTCTAACTACTCGGTTCAAGAAGACAATCAACTTGTCGCCGCATGGCTCAACGTTGGCTTAGATCCAATAAAAGGAAATGATAAAAAAAGTACAACATATTGGGAGCGAATTGCAACATACTATCATAAACACAAGGATTTTGTAAGCGATAGGGATTCTGCTTCTCTACAACATCGTTGGCAAAATATTCAATATGCTGTTAATAAGTTTTGTGGATGCTGGGAACAAATTGAAAATCGACCAAAGAGTGGTGAGAGTTATGAAGATAAGCTTCTACGTGCAAAAGATAAGTACAAAAATGATGAACACGGGGCATTTCAGCACGAACATAACTGGAATTCCTTGAGGTACACGCAAAAATGGATATCCTTTAGTCACAAGAAAGCTGCAAATGCTGAAGGTAAAAAGAGGAAGTCTCTAAATCCTGAAGTTTGTGCGTCCCCAATTGTTTTAGACGAAGGCAATGCTGCAACTCCTGAACCTTCAATCATGGACCGGCCGATAGGTCAAAAACAAGCGAAAGAATTGCTGAAGAAAGAAAAGGTAAAAGATAATATCACTTCACAGTTGGAACTATTAAGGGAAATGAAATCAGAAGCTGAGCGTAAGAAAGAAGAGCGTTTCCAATTGAGTGTTTATCAGGAACAGAAGCTACTTAGCCTCAAGGAGAAAAAAGAACAAGCGAAACAACAACGAGAGGATGATAAGATCATGTTTACAAATATGGATACCTTGAGTCCAATGCAAGCAGCATATATTAGAGATCGGCAGGCAGAAATCATGGCAAAAAGAGGACTTCCAAGTTCCAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

331

Amino Acids

38.2

Weight (kDa)

9.0

Isoelectric Point (pI)

44.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 165 - 320 3.7e-14 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 127
AccB7I CCANNNNNTGG 1 cut(s) 428
AciI CCGC 1 cut(s) 219
AclI AACGTT 1 cut(s) 231
AclWI GGATC 1 cut(s) 236
AcoI YGGCCR 1 cut(s) 677
AcsI RAATTY 1 cut(s) 517
AcuI CTGAAG 3 cut(s) 597, 627, 731
AfaI GTAC 5 cut(s) 51, 117, 271, 473, 530
AfiI CCNNNNNNNGG 2 cut(s) 251, 428
AflIII ACRYGT 1 cut(s) 102
AgsI TTSAA 4 cut(s) 197, 371, 413, 666
AluBI AGCT 5 cut(s) 179, 451, 566, 779, 832
AluI AGCT 5 cut(s) 179, 451, 566, 779, 832
Alw26I GTCTC 1 cut(s) 600
AlwI GGATC 1 cut(s) 236
AlwNI CAGNNNCTG 1 cut(s) 779
AoxI GGCC 1 cut(s) 677
ApeKI GCWGC 3 cut(s) 566, 647, 929
ApoI RAATTY 1 cut(s) 517
AspS9I GGNCC 1 cut(s) 673
AsuHPI GGTGA 2 cut(s) 31, 443
AvaII GGWCC 1 cut(s) 673
BbsI GAAGAC 2 cut(s) 99, 207
BbvI GCAGC 3 cut(s) 553, 634, 941
BccI CCATC 2 cut(s) 71, 163
BcgI CGANNNNNNTGC 4 cut(s) 626, 660, 688, 722
BciVI GTATCC 1 cut(s) 901
BcoDI GTCTC 1 cut(s) 600
BfuAI ACCTGC 1 cut(s) 127
BfuI GTATCC 1 cut(s) 901
BisI GCNGC 4 cut(s) 219, 567, 648, 930
BlpI GCTNAGC 1 cut(s) 780
BlsI GCNGC 4 cut(s) 220, 568, 649, 931
BmcAI AGTACT 1 cut(s) 51
Bme18I GGWCC 1 cut(s) 673
BmgT120I GGNCC 1 cut(s) 673
BmsI GCATC 1 cut(s) 386
BpiI GAAGAC 2 cut(s) 99, 207
BplI GAGNNNNNCTC 2 cut(s) 580, 612
BpmI CTGGAG 1 cut(s) 30
Bpu1102I GCTNAGC 1 cut(s) 780
BpuEI CTTGAG 4 cut(s) 96, 544, 827, 934
BsaAI YACGTR 1 cut(s) 458
Bsc4I CCNNNNNNNGG 2 cut(s) 251, 428
Bse118I RCCGGY 1 cut(s) 675
Bse1I ACTGG 2 cut(s) 47, 518
Bse3DI GCAATG 1 cut(s) 649
BseGI GGATG 2 cut(s) 401, 886
BseLI CCNNNNNNNGG 2 cut(s) 251, 428
BseMI GCAATG 1 cut(s) 649
BseMII CTCAG 1 cut(s) 771
BseNI ACTGG 2 cut(s) 47, 518
BseRI GAGGAG 2 cut(s) 26, 132
BseX3I CGGCCG 1 cut(s) 677
BseXI GCAGC 3 cut(s) 553, 634, 941
BseYI CCCAGC 1 cut(s) 399
Bsh1285I CGRYCG 1 cut(s) 680
BshFI GGCC 1 cut(s) 679
BsiEI CGRYCG 1 cut(s) 680
BsiSI CCGG 1 cut(s) 676
BslFI GGGAC 1 cut(s) 604
BslI CCNNNNNNNGG 2 cut(s) 251, 428
BsmAI GTCTC 1 cut(s) 600
BsmFI GGGAC 1 cut(s) 604
BsnI GGCC 1 cut(s) 679
Bsp143I GATC 4 cut(s) 66, 241, 888, 943
Bsp1720I GCTNAGC 1 cut(s) 780
BspACI CCGC 1 cut(s) 219
BspANI GGCC 1 cut(s) 679
BspCNI CTCAG 1 cut(s) 772
BspMI ACCTGC 1 cut(s) 127
BspPI GGATC 1 cut(s) 236
BspQI GCTCTTC 1 cut(s) 789
BsrDI GCAATG 1 cut(s) 649
BsrFI RCCGGY 1 cut(s) 675
BsrI ACTGG 2 cut(s) 47, 518
BssAI RCCGGY 1 cut(s) 675
BssMI GATC 4 cut(s) 66, 241, 888, 943
Bst4CI ACNGT 1 cut(s) 747
Bst6I CTCTTC 1 cut(s) 789
BstBAI YACGTR 1 cut(s) 458
BstC8I GCNNGC 2 cut(s) 927, 951
BstDEI CTNAG 3 cut(s) 238, 780, 836
BstF5I GGATG 2 cut(s) 401, 886
BstKTI GATC 4 cut(s) 69, 244, 891, 946
BstMAI GTCTC 1 cut(s) 600
BstMBI GATC 4 cut(s) 66, 241, 888, 943
BstMCI CGRYCG 1 cut(s) 680
BstMWI GCNNNNNNNGC 1 cut(s) 572
BstNSI RCATGY 1 cut(s) 106
BstV1I GCAGC 3 cut(s) 553, 634, 941
BstV2I GAAGAC 2 cut(s) 99, 207
BstX2I RGATCY 1 cut(s) 241
BstYI RGATCY 1 cut(s) 241
BstZI CGGCCG 1 cut(s) 677
BsuI GTATCC 1 cut(s) 901
BsuRI GGCC 1 cut(s) 679
BtsCI GGATG 2 cut(s) 401, 886
BveI ACCTGC 1 cut(s) 127
Cac8I GCNNGC 2 cut(s) 927, 951
CaiI CAGNNNCTG 1 cut(s) 779
Cfr10I RCCGGY 1 cut(s) 675
Cfr13I GGNCC 1 cut(s) 673
CseI GACGC 1 cut(s) 606
Csp6I GTAC 5 cut(s) 50, 116, 270, 472, 529
CviAII CATG 6 cut(s) 17, 103, 222, 670, 892, 961
CviQI GTAC 5 cut(s) 50, 116, 270, 472, 529
DdeI CTNAG 3 cut(s) 238, 780, 836
DpnI GATC 4 cut(s) 68, 243, 890, 945
DpnII GATC 4 cut(s) 66, 241, 888, 943
EaeI YGGCCR 1 cut(s) 677
EagI CGGCCG 1 cut(s) 677
Eam1104I CTCTTC 1 cut(s) 789
EarI CTCTTC 1 cut(s) 789
EclXI CGGCCG 1 cut(s) 677
Eco32I GATATC 1 cut(s) 546
Eco47I GGWCC 1 cut(s) 673
Eco52I CGGCCG 1 cut(s) 677
Eco57I CTGAAG 3 cut(s) 597, 627, 731
EcoRI GAATTC 1 cut(s) 517
EcoRV GATATC 1 cut(s) 546
EcoT22I ATGCAT 1 cut(s) 22
FaeI CATG 6 cut(s) 20, 106, 225, 673, 895, 964
FalI AAGNNNNNCTT 2 cut(s) 435, 467
FaqI GGGAC 1 cut(s) 604
FatI CATG 6 cut(s) 16, 102, 221, 669, 891, 960
Fnu4HI GCNGC 4 cut(s) 219, 567, 648, 930
FokI GGATG 2 cut(s) 408, 893
Fsp4HI GCNGC 4 cut(s) 219, 567, 648, 930
GluI GCNGC 4 cut(s) 219, 567, 648, 930
GsaI CCCAGC 1 cut(s) 403
GsuI CTGGAG 1 cut(s) 30
HaeIII GGCC 1 cut(s) 679
HapII CCGG 1 cut(s) 676
HgaI GACGC 1 cut(s) 606
Hin1II CATG 6 cut(s) 20, 106, 225, 673, 895, 964
HindIII AAGCTT 1 cut(s) 449
HinfI GANTC 3 cut(s) 59, 335, 916
HpaII CCGG 1 cut(s) 676
HphI GGTGA 2 cut(s) 31, 443
Hpy166II GTNNAC 2 cut(s) 531, 897
Hpy188I TCNGA 2 cut(s) 133, 775
Hpy188III TCNNGA 4 cut(s) 197, 605, 656, 821
Hpy8I GTNNAC 2 cut(s) 531, 897
HpyAV CCTTC 3 cut(s) 572, 632, 672
HpyCH4III ACNGT 1 cut(s) 747
HpyCH4IV ACGT 2 cut(s) 231, 457
HpyCH4V TGCA 6 cut(s) 20, 293, 461, 569, 650, 925
HpyF10VI GCNNNNNNNGC 1 cut(s) 572
HpyF3I CTNAG 3 cut(s) 238, 780, 836
HpySE526I ACGT 2 cut(s) 231, 457
Hsp92II CATG 6 cut(s) 20, 106, 225, 673, 895, 964
Kzo9I GATC 4 cut(s) 66, 241, 888, 943
LguI GCTCTTC 1 cut(s) 789
LmnI GCTCC 1 cut(s) 283
LpnPI CCDG 9 cut(s) 60, 132, 385, 499, 618, 669, 689, 806, 935
Lsp1109I GCAGC 3 cut(s) 553, 634, 941
LweI GCATC 1 cut(s) 386
MaeII ACGT 2 cut(s) 231, 457
MaeIII GTNAC 2 cut(s) 98, 554
MalI GATC 4 cut(s) 68, 243, 890, 945
MboI GATC 4 cut(s) 66, 241, 888, 943
MboII GAAGA 5 cut(s) 99, 212, 455, 724, 806
MfeI CAATTG 2 cut(s) 624, 806
MflI RGATCY 1 cut(s) 241
MluCI AATT 6 cut(s) 288, 408, 517, 624, 704, 806
MlyI GAGTC 2 cut(s) 53, 925
MmeI TCCRAC 1 cut(s) 729
MnlI CCTC 8 cut(s) 47, 150, 153, 519, 582, 851, 871, 965
Mph1103I ATGCAT 1 cut(s) 22
MseI TTAA 3 cut(s) 83, 381, 758
MspI CCGG 1 cut(s) 676
MunI CAATTG 2 cut(s) 624, 806
MwoI GCNNNNNNNGC 1 cut(s) 572
NdeII GATC 4 cut(s) 66, 241, 888, 943
NlaIII CATG 6 cut(s) 20, 106, 225, 673, 895, 964
NmuCI GTSAC 1 cut(s) 554
NsiI ATGCAT 1 cut(s) 22
NspI RCATGY 1 cut(s) 106
PciI ACATGT 1 cut(s) 102
PciSI GCTCTTC 1 cut(s) 789
PfeI GAWTC 1 cut(s) 335
PflMI CCANNNNNTGG 1 cut(s) 428
PkrI GCNGC 4 cut(s) 220, 568, 649, 931
PleI GAGTC 2 cut(s) 53, 924
PpsI GAGTC 2 cut(s) 53, 924
Ppu21I YACGTR 1 cut(s) 458
PscI ACATGT 1 cut(s) 102
Psp1406I AACGTT 1 cut(s) 231
PspFI CCCAGC 1 cut(s) 399
PspPI GGNCC 1 cut(s) 673
PsrI GAACNNNNNNTAC 2 cut(s) 816, 848
PstNI CAGNNNCTG 1 cut(s) 779
PsuI RGATCY 1 cut(s) 241
RsaI GTAC 5 cut(s) 51, 117, 271, 473, 530
RsaNI GTAC 5 cut(s) 50, 116, 270, 472, 529
SapI GCTCTTC 1 cut(s) 789
SaqAI TTAA 3 cut(s) 83, 381, 758
SatI GCNGC 4 cut(s) 219, 567, 648, 930
Sau3AI GATC 4 cut(s) 66, 241, 888, 943
Sau96I GGNCC 1 cut(s) 673
ScaI AGTACT 1 cut(s) 51
SchI GAGTC 2 cut(s) 53, 925
SfaNI GCATC 1 cut(s) 386
SinI GGWCC 1 cut(s) 673
SmlI CTYRAG 4 cut(s) 111, 523, 842, 913
SmoI CTYRAG 4 cut(s) 111, 523, 842, 913
Sse9I AATT 6 cut(s) 288, 408, 517, 624, 704, 806
SsiI CCGC 1 cut(s) 219
SspI AATATT 1 cut(s) 367
TaaI ACNGT 1 cut(s) 747
TaiI ACGT 2 cut(s) 234, 460
TaqI TCGA 2 cut(s) 69, 418
TasI AATT 6 cut(s) 288, 408, 517, 624, 704, 806
TatI WGTACW 3 cut(s) 49, 269, 471
TauI GCSGC 1 cut(s) 221
TfiI GAWTC 1 cut(s) 335
Tru1I TTAA 3 cut(s) 83, 381, 758
Tru9I TTAA 3 cut(s) 83, 381, 758
TseFI GTSAC 1 cut(s) 554
TseI GCWGC 3 cut(s) 566, 647, 929
Tsp45I GTSAC 1 cut(s) 554
TspDTI ATGAA 3 cut(s) 456, 498, 782
Van91I CCANNNNNTGG 1 cut(s) 428
VpaK11BI GGWCC 1 cut(s) 673
XapI RAATTY 1 cut(s) 517
XceI RCATGY 1 cut(s) 106
ZrmI AGTACT 1 cut(s) 51
Zsp2I ATGCAT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.