Rh3DG253500

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0011634
Physical Location & Seq
Forward (+)
25046914 .. 25048957
2044 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG253500.1

Sequence Viewer

Length: 552 bp
ATGTACAGAGACAGAGAAAAAGTTGCATATTTGCAAGAACATAACTGGAATATCTTGAAGTATGAGCAAAAGTGGATATCGTTCAGTGCCAAGAAAGCTACAATTGCAACTACTAGAAAAAGGAAGTCTGTAAATCCTGAAGCGTCTCTTCAAAATGCTTCATCTCCAATAGTTTTAGATGAAGGCAATGGTGCAACTTCTGAACCTCCTTTCATGGAGCGGGCAATAGGACCAAAACAAGCTAAGGACTTGTTAAAGAAAGAAAAGGTAAAAGAGAATGTGGCTTCACAATTGGAACAATTCAGGGCATTCAAAAGAGAAACTGAACGTAGAAAAGAAGAACGTTTCCAATTGAGTCTTTCTCAAGAAGAAAAGCTCTATATCCTCAAGCGAAAAAAGGAGCAAGCGAAACAACAACGAGAGGATGATAAAATAATGTTGATAGATATCACTACTCTGCCGGAAATGCAAGCTGAATATTTTAGAGACCGTCAGGCAGAAATCATGGCAAGAAGAGCCCGTCCAAGTGAAAGTATGTTGTTTGCAAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

183

Amino Acids

21.66

Weight (kDa)

9.69

Isoelectric Point (pI)

56.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 13 - 168 3.4e-15 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 220
AciI CCGC 1 cut(s) 220
AclI AACGTT 1 cut(s) 343
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 1 cut(s) 5
AgsI TTSAA 3 cut(s) 58, 152, 313
AluBI AGCT 4 cut(s) 98, 242, 376, 473
AluI AGCT 4 cut(s) 98, 242, 376, 473
Alw26I GTCTC 3 cut(s) 3, 150, 480
AspS9I GGNCC 1 cut(s) 230
AvaII GGWCC 1 cut(s) 230
BanII GRGCYC 1 cut(s) 520
BcoDI GTCTC 3 cut(s) 3, 150, 480
BfaI CTAG 1 cut(s) 114
Bme18I GGWCC 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 230
BplI GAGNNNNNCTC 2 cut(s) 346, 378
Bpu10I CCTNAGC 1 cut(s) 243
BpuEI CTTGAG 2 cut(s) 348, 371
BsaBI GATNNNNATC 1 cut(s) 446
BsaI GGTCTC 1 cut(s) 480
Bse1I ACTGG 1 cut(s) 50
Bse3DI GCAATG 1 cut(s) 193
Bse8I GATNNNNATC 1 cut(s) 446
BseGI GGATG 1 cut(s) 430
BseJI GATNNNNATC 1 cut(s) 446
BseMI GCAATG 1 cut(s) 193
BseNI ACTGG 1 cut(s) 50
BsiSI CCGG 1 cut(s) 461
BsmAI GTCTC 3 cut(s) 3, 150, 480
BsmBI CGTCTC 1 cut(s) 150
BsmI GAATGC 1 cut(s) 308
Bso31I GGTCTC 1 cut(s) 480
Bsp1286I GDGCHC 1 cut(s) 520
Bsp1407I TGTACA 1 cut(s) 3
BspACI CCGC 1 cut(s) 220
BspQI GCTCTTC 1 cut(s) 508
BspTNI GGTCTC 1 cut(s) 480
BsrBI CCGCTC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 193
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 491
Bst6I CTCTTC 2 cut(s) 153, 508
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 3 cut(s) 222, 405, 471
BstDEI CTNAG 1 cut(s) 243
BstF5I GGATG 1 cut(s) 430
BstMAI GTCTC 3 cut(s) 3, 150, 480
BstMWI GCNNNNNNNGC 4 cut(s) 95, 104, 466, 515
BtsCI GGATG 1 cut(s) 430
BtsIMutI CAGTG 1 cut(s) 91
Cac8I GCNNGC 3 cut(s) 222, 405, 471
Cfr13I GGNCC 1 cut(s) 230
CseI GACGC 1 cut(s) 132
Csp6I GTAC 1 cut(s) 4
CviAII CATG 2 cut(s) 214, 505
CviJI RGCY 6 cut(s) 98, 242, 284, 376, 473, 518
CviKI_1 RGCY 6 cut(s) 98, 242, 284, 376, 473, 518
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 1 cut(s) 243
Eam1104I CTCTTC 2 cut(s) 153, 508
EarI CTCTTC 2 cut(s) 153, 508
Eco24I GRGCYC 1 cut(s) 520
Eco31I GGTCTC 1 cut(s) 480
Eco32I GATATC 2 cut(s) 78, 448
Eco47I GGWCC 1 cut(s) 230
Eco57I CTGAAG 1 cut(s) 159
EcoRV GATATC 2 cut(s) 78, 448
EcoT38I GRGCYC 1 cut(s) 520
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 2 cut(s) 217, 508
FaiI YATR 7 cut(s) 28, 42, 63, 215, 381, 506, 536
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FatI CATG 2 cut(s) 213, 504
FauI CCCGC 1 cut(s) 213
FokI GGATG 1 cut(s) 437
FriOI GRGCYC 1 cut(s) 520
FspBI CTAG 1 cut(s) 114
HapII CCGG 1 cut(s) 461
HgaI GACGC 1 cut(s) 132
Hin1II CATG 2 cut(s) 217, 508
HinfI GANTC 1 cut(s) 355
HpaII CCGG 1 cut(s) 461
Hpy188I TCNGA 1 cut(s) 202
Hpy188III TCNNGA 3 cut(s) 55, 137, 365
HpyAV CCTTC 1 cut(s) 176
HpyCH4III ACNGT 1 cut(s) 491
HpyCH4IV ACGT 2 cut(s) 328, 343
HpyCH4V TGCA 6 cut(s) 26, 34, 107, 194, 469, 545
HpyF10VI GCNNNNNNNGC 4 cut(s) 95, 104, 466, 515
HpyF3I CTNAG 1 cut(s) 243
HpySE526I ACGT 2 cut(s) 328, 343
Hsp92II CATG 2 cut(s) 217, 508
LguI GCTCTTC 1 cut(s) 508
LmnI GCTCC 2 cut(s) 217, 400
LpnPI CCDG 5 cut(s) 31, 150, 289, 474, 479
MaeI CTAG 1 cut(s) 114
MaeII ACGT 2 cut(s) 328, 343
MbiI CCGCTC 1 cut(s) 220
MboII GAAGA 4 cut(s) 140, 350, 380, 525
MfeI CAATTG 3 cut(s) 102, 290, 350
MhlI GDGCHC 1 cut(s) 520
MluCI AATT 4 cut(s) 102, 290, 299, 350
MlyI GAGTC 1 cut(s) 364
MnlI CCTC 3 cut(s) 216, 395, 415
MseI TTAA 1 cut(s) 254
MspI CCGG 1 cut(s) 461
MunI CAATTG 3 cut(s) 102, 290, 350
Mva1269I GAATGC 1 cut(s) 308
MwoI GCNNNNNNNGC 4 cut(s) 95, 104, 466, 515
NlaIII CATG 2 cut(s) 217, 508
PciSI GCTCTTC 1 cut(s) 508
PctI GAATGC 1 cut(s) 308
PleI GAGTC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 363
Psp1406I AACGTT 1 cut(s) 343
PspPI GGNCC 1 cut(s) 230
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 508
SaqAI TTAA 1 cut(s) 254
Sau96I GGNCC 1 cut(s) 230
SchI GAGTC 1 cut(s) 364
SduI GDGCHC 1 cut(s) 520
SetI ASST 8 cut(s) 100, 208, 244, 270, 331, 346, 378, 475
SinI GGWCC 1 cut(s) 230
SmlI CTYRAG 2 cut(s) 363, 386
SmoI CTYRAG 2 cut(s) 363, 386
Sse9I AATT 4 cut(s) 102, 290, 299, 350
SsiI CCGC 1 cut(s) 220
SspI AATATT 1 cut(s) 479
SspMI CTAG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 491
TaiI ACGT 2 cut(s) 331, 346
TasI AATT 4 cut(s) 102, 290, 299, 350
TatI WGTACW 1 cut(s) 3
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 1 cut(s) 91
TspDTI ATGAA 3 cut(s) 150, 195, 202
TspRI CASTG 1 cut(s) 91
VpaK11BI GGWCC 1 cut(s) 230
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.