Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002545.1

Orthogroup ID

OG0011634

Physical Location & Seq

Genomic Coordinates Forward (+)

487 .. 1026

Gene Structure 540 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002545.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

atgtacagagacacagaaaaagttgcatttttgcaagaacataactggaatatcttgaagtatgagcaaaagtggatatcgttcagtgccaagaaagctacaattgcaactactagaaaaaggaagtctgtaaatcctgaagcgtctcttcaaaatgcttcatctccaatagttttagatgaaggcaatggtgcaacttctgaacctcctttcatggagcggccaataggacaaaaacaagctaaggacttgttaaagaaagaaaaggtaaaagagaatgtggcttcacaattggaacaattcagggcattcaaaagagaaactgaacataggaaagaagaacgtttccaattgagtctttctcaagaagaaaagctctatatcctcaaggaaaaaaaggagcaagcgaaacaacaacgagaggatgataaaataatgttgatagatatcacaactctgccggaaatgcaagctgaatattttagagaccgtcaggcagaaatcatggcaagaagagcccgtccaagtgaaagtatgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

179

Amino Acids

21.14

Weight (kDa)

9.28

Isoelectric Point (pI)

53.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011634)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31921
rosa_laevigata	RLG00000001662 RLG00000029965 RLG00000031902 RLG00000032919
rosa_multiflora	Rmu_sc0002545.1_g000001 Rmu_sc0002720.1_g000018 Rmu_sc0004092.1_g000030
rosa_roxburghii	Rroxscaffold_1G00010410
rosa_rugosa	Rorug02G0047500 Rorug03G0276600
rosa_samantha	Rh3DG253500 Rh4AG050300 Rh4BG394100 Rh4CG257500 Rh4CG409000 Rh6CG047300 Rh6DG042800
rosa_wichuraiana	Rw6G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	220
AciI	CCGC	1 cut(s)	220
AclI	AACGTT	1 cut(s)	343
AcoI	YGGCCR	1 cut(s)	221
AcuI	CTGAAG	1 cut(s)	159
AfaI	GTAC	1 cut(s)	5
AgsI	TTSAA	3 cut(s)	58, 152, 313
AluBI	AGCT	4 cut(s)	98, 242, 376, 473
AluI	AGCT	4 cut(s)	98, 242, 376, 473
Alw26I	GTCTC	3 cut(s)	3, 150, 480
AoxI	GGCC	1 cut(s)	221
BanII	GRGCYC	1 cut(s)	520
BcoDI	GTCTC	3 cut(s)	3, 150, 480
BfaI	CTAG	1 cut(s)	114
BisI	GCNGC	1 cut(s)	221
BlsI	GCNGC	1 cut(s)	222
BplI	GAGNNNNNCTC	2 cut(s)	346, 378
Bpu10I	CCTNAGC	1 cut(s)	243
BpuEI	CTTGAG	2 cut(s)	348, 371
BsaBI	GATNNNNATC	1 cut(s)	446
BsaI	GGTCTC	1 cut(s)	480
Bse1I	ACTGG	1 cut(s)	50
Bse3DI	GCAATG	1 cut(s)	193
Bse8I	GATNNNNATC	1 cut(s)	446
BseGI	GGATG	1 cut(s)	430
BseJI	GATNNNNATC	1 cut(s)	446
BseMI	GCAATG	1 cut(s)	193
BseNI	ACTGG	1 cut(s)	50
BshFI	GGCC	1 cut(s)	223
BsiSI	CCGG	1 cut(s)	461
BsmAI	GTCTC	3 cut(s)	3, 150, 480
BsmBI	CGTCTC	1 cut(s)	150
BsmI	GAATGC	1 cut(s)	308
BsnI	GGCC	1 cut(s)	223
Bso31I	GGTCTC	1 cut(s)	480
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp1407I	TGTACA	1 cut(s)	3
BspACI	CCGC	1 cut(s)	220
BspANI	GGCC	1 cut(s)	223
BspQI	GCTCTTC	1 cut(s)	508
BspTNI	GGTCTC	1 cut(s)	480
BsrBI	CCGCTC	1 cut(s)	220
BsrDI	GCAATG	1 cut(s)	193
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	1 cut(s)	50
Bst4CI	ACNGT	1 cut(s)	491
Bst6I	CTCTTC	2 cut(s)	153, 508
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	2 cut(s)	405, 471
BstDEI	CTNAG	1 cut(s)	243
BstF5I	GGATG	1 cut(s)	430
BstMAI	GTCTC	3 cut(s)	3, 150, 480
BstMWI	GCNNNNNNNGC	4 cut(s)	95, 104, 466, 515
BsuRI	GGCC	1 cut(s)	223
BtsCI	GGATG	1 cut(s)	430
BtsIMutI	CAGTG	1 cut(s)	91
Cac8I	GCNNGC	2 cut(s)	405, 471
CseI	GACGC	1 cut(s)	132
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	214, 505
CviJI	RGCY	7 cut(s)	98, 223, 242, 284, 376, 473, 518
CviKI_1	RGCY	7 cut(s)	98, 223, 242, 284, 376, 473, 518
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	1 cut(s)	243
EaeI	YGGCCR	1 cut(s)	221
Eam1104I	CTCTTC	2 cut(s)	153, 508
EarI	CTCTTC	2 cut(s)	153, 508
Eco24I	GRGCYC	1 cut(s)	520
Eco31I	GGTCTC	1 cut(s)	480
Eco32I	GATATC	2 cut(s)	78, 448
Eco57I	CTGAAG	1 cut(s)	159
EcoRV	GATATC	2 cut(s)	78, 448
EcoT38I	GRGCYC	1 cut(s)	520
Esp3I	CGTCTC	1 cut(s)	150
FaeI	CATG	2 cut(s)	217, 508
FaiI	YATR	7 cut(s)	42, 63, 215, 330, 381, 506, 536
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FatI	CATG	2 cut(s)	213, 504
Fnu4HI	GCNGC	1 cut(s)	221
FokI	GGATG	1 cut(s)	437
FriOI	GRGCYC	1 cut(s)	520
Fsp4HI	GCNGC	1 cut(s)	221
FspBI	CTAG	1 cut(s)	114
GluI	GCNGC	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	223
HapII	CCGG	1 cut(s)	461
HgaI	GACGC	1 cut(s)	132
Hin1II	CATG	2 cut(s)	217, 508
HinfI	GANTC	1 cut(s)	355
HpaII	CCGG	1 cut(s)	461
Hpy188I	TCNGA	1 cut(s)	202
Hpy188III	TCNNGA	3 cut(s)	55, 137, 365
HpyAV	CCTTC	1 cut(s)	176
HpyCH4III	ACNGT	1 cut(s)	491
HpyCH4IV	ACGT	1 cut(s)	343
HpyCH4V	TGCA	5 cut(s)	26, 34, 107, 194, 469
HpyF10VI	GCNNNNNNNGC	4 cut(s)	95, 104, 466, 515
HpyF3I	CTNAG	1 cut(s)	243
HpySE526I	ACGT	1 cut(s)	343
Hsp92II	CATG	2 cut(s)	217, 508
LguI	GCTCTTC	1 cut(s)	508
LmnI	GCTCC	2 cut(s)	217, 400
LpnPI	CCDG	5 cut(s)	31, 150, 289, 474, 479
MaeI	CTAG	1 cut(s)	114
MaeII	ACGT	1 cut(s)	343
MbiI	CCGCTC	1 cut(s)	220
MboII	GAAGA	4 cut(s)	140, 350, 380, 525
MfeI	CAATTG	3 cut(s)	102, 290, 350
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	4 cut(s)	102, 290, 299, 350
MlyI	GAGTC	1 cut(s)	364
MnlI	CCTC	3 cut(s)	216, 395, 415
MseI	TTAA	1 cut(s)	254
MspI	CCGG	1 cut(s)	461
MunI	CAATTG	3 cut(s)	102, 290, 350
Mva1269I	GAATGC	1 cut(s)	308
MwoI	GCNNNNNNNGC	4 cut(s)	95, 104, 466, 515
NlaIII	CATG	2 cut(s)	217, 508
PciSI	GCTCTTC	1 cut(s)	508
PctI	GAATGC	1 cut(s)	308
PkrI	GCNGC	1 cut(s)	222
PleI	GAGTC	1 cut(s)	363
PpsI	GAGTC	1 cut(s)	363
Psp1406I	AACGTT	1 cut(s)	343
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	508
SaqAI	TTAA	1 cut(s)	254
SatI	GCNGC	1 cut(s)	221
SchI	GAGTC	1 cut(s)	364
SduI	GDGCHC	1 cut(s)	520
SetI	ASST	7 cut(s)	100, 208, 244, 270, 346, 378, 475
SmlI	CTYRAG	2 cut(s)	363, 386
SmoI	CTYRAG	2 cut(s)	363, 386
Sse9I	AATT	4 cut(s)	102, 290, 299, 350
SsiI	CCGC	1 cut(s)	220
SspI	AATATT	1 cut(s)	479
SspMI	CTAG	1 cut(s)	114
TaaI	ACNGT	1 cut(s)	491
TaiI	ACGT	1 cut(s)	346
TasI	AATT	4 cut(s)	102, 290, 299, 350
TatI	WGTACW	1 cut(s)	3
TauI	GCSGC	1 cut(s)	223
Tru1I	TTAA	1 cut(s)	254
Tru9I	TTAA	1 cut(s)	254
TscAI	CASTG	1 cut(s)	91
TspDTI	ATGAA	3 cut(s)	150, 195, 202
TspRI	CASTG	1 cut(s)	91
XspI	CTAG	1 cut(s)	114

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.