Rorug03G0276600

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0011634
Physical Location & Seq
Forward (+)
27327798 .. 27335818
8021 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0276600.1

Sequence Viewer

Length: 1443 bp
ATGGCGGCGTCGGCGTACGAGGCGACTGGCGGAGCTGTGCCGGACTGGCTGAACAAAGGTGACAACGCATGGCAGATGATCTCCGCCACGCTGGTGGGTCTCCAGAGCGTGCCAGGGCTGGTCATCCTCTACGGGAGCATAGTGAAGAAGAAGTGGGCCGTCAACTCCGCCTTCATGGCCCTCTATGCCTTCGCCGCCGTCGTGCTTTGCTGGGTGTCGTGGGCCTACAAGATGTCGTTCGGGGACAAGCTGCTGCCGTTTTGGGGGAAGGCCGGGCCTGCCTTAGGGCAGAAGTTTCTGCTCAAGCACGCTGCCCTCCCCGAATCCACACAGCACCACGCCGACGGCAGTATTGAGACACCCATGGCCATGCCGTTATACCCGATGGCGACCATGGTGTGGTTCCAGTGCGTGTTCGCGGCCATAACACTGATACTGTTGGCAGGGTCGGTGCTGGGGAGAATGAACTTCAAGGCGTGGATGATGTTCGTGCCTCTGTGGCTGACGTTCTCGTACACCGTCGGCGCTTTTAGCTTGTGGGGCGGAGGGTTCTTGTTCCACTGGGGTGTTATGGATTACTCCGGCGGGTACGTCATTCATCTTTCTTCAGGGATTGCTGGTTTCACCACTGCTTACTGGGTAGGACCTAGGGTGAAGAAGGACAGGGAGAGATTCCCACCAAACAACGTACTGCTGACGTTGGCCGGAGCAGGGTTGCTGTGGATGGGATGGGCCGGTTTCAACGGCGGAGATCCGTACGCGGCCAACACAGACTCCTCCATGGCTGTCCTCAACACTAACATCTGCGCCGCCACGAGTCTCTTGGTGTGGACATGGCTCGATGTCATCTTCTTCAACAAGCCCTCCGTCATCGGAGCTGTCCAGGGAATGATTACTGGCCTCGTATGTATTACTCCTGCTGCAGGTCTTGTACAAGGATGGGCAGCAGTAGTGATGGGAGTATTGTCTGGCAGCGTGCCATGGTTCACCATGATGATCGTAGACAAAAGGTGGAGACTCTTAACCGTCGTTGACGACACCCTTGGCGTTGTCCACACCCACGCAGTGGCCGGATACCTAGGCGGCATATTGACCGGCATCTTTGCCGAGCCCCAACTATGCGCACTCTTCTTACCTGTCACGAACTCTCGCGGGGTAGTCTACGGGGGCATGCAAGTGTTCAAACAAATCGTAGGCGGCCTGTTCATCATCGGATGGAACATCGTGGTGACCTCGATCATTTGTGTGGCAATCAGGTTTGTGATTCCTCTACGGATGCCAGAGGAGCAGTTGTTGATTGGAGATGATGCAGTGCATGGGGAAGAGGCCTATGCCTTGTGGGGTGATGGGGAGTTGTATGATGAAACTAAGCATGATAAACATTACTCGGATGATGGCTCACAGGGTAAGTTTGCATCCAGTGGTGCCACTCAGGTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

480

Amino Acids

51.9

Weight (kDa)

6.35

Isoelectric Point (pI)

30.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ammonium_transp PF00909 23 - 444 5.1e-80 Ammonium Transporter Family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1123
Acc36I ACCTGC 1 cut(s) 914
AccB1I GGYRCC 1 cut(s) 1424
AccB7I CCANNNNNTGG 2 cut(s) 399, 1066
AccI GTMKAC 2 cut(s) 1002, 1161
AccII CGCG 3 cut(s) 419, 761, 1152
AclWI GGATC 1 cut(s) 746
AcoI YGGCCR 5 cut(s) 366, 420, 702, 762, 1068
AcuI CTGAAG 1 cut(s) 591
AcyI GRCGYC 1 cut(s) 8
AdeI CACNNNGTG 1 cut(s) 1066
AfaI GTAC 6 cut(s) 17, 515, 590, 690, 758, 933
AfiI CCNNNNNNNGG 6 cut(s) 263, 284, 399, 711, 923, 1066
AgsI TTSAA 4 cut(s) 472, 742, 856, 1183
AjnI CCWGG 2 cut(s) 112, 882
AleI CACNNNNGTG 2 cut(s) 92, 564
AluBI AGCT 4 cut(s) 35, 250, 534, 878
AluI AGCT 4 cut(s) 35, 250, 534, 878
Alw26I GTCTC 4 cut(s) 104, 350, 824, 1009
AlwI GGATC 1 cut(s) 746
ApeKI GCWGC 6 cut(s) 250, 253, 311, 920, 944, 972
AspA2I CCTAGG 2 cut(s) 647, 1078
AspLEI GCGC 3 cut(s) 527, 809, 1124
AspS9I GGNCC 6 cut(s) 156, 178, 222, 275, 644, 732
AsuC2I CCSGG 1 cut(s) 274
AsuHPI GGTGA 6 cut(s) 71, 616, 664, 979, 1240, 1355
AvaII GGWCC 1 cut(s) 644
AvrII CCTAGG 2 cut(s) 647, 1078
AxyI CCTNAGG 1 cut(s) 283
BalI TGGCCA 1 cut(s) 368
BanI GGYRCC 1 cut(s) 1424
BanII GRGCYC 1 cut(s) 1113
BauI CACGAG 1 cut(s) 814
BbvI GCAGC 6 cut(s) 237, 240, 298, 907, 956, 984
BccI CCATC 8 cut(s) 379, 718, 723, 933, 949, 1209, 1340, 1388
BceAI ACGGC 6 cut(s) 143, 182, 241, 358, 361, 760
BciT130I CCWGG 2 cut(s) 114, 884
BciVI GTATCC 1 cut(s) 1067
BcnI CCSGG 1 cut(s) 274
BcoDI GTCTC 4 cut(s) 104, 350, 824, 1009
BfaI CTAG 2 cut(s) 648, 1079
BfmI CTRYAG 1 cut(s) 921
BfoI RGCGCY 1 cut(s) 528
BfuAI ACCTGC 1 cut(s) 914
BfuI GTATCC 1 cut(s) 1067
BglI GCCNNNNNGGC 3 cut(s) 46, 176, 499
BlnI CCTAGG 2 cut(s) 647, 1078
Bme1390I CCNGG 3 cut(s) 114, 274, 884
Bme18I GGWCC 1 cut(s) 644
BmgT120I GGNCC 6 cut(s) 156, 178, 222, 275, 644, 732
BmiI GGNNCC 2 cut(s) 404, 1426
BmrFI CCNGG 3 cut(s) 114, 274, 884
BmrI ACTGGG 2 cut(s) 571, 646
BmsI GCATC 4 cut(s) 1107, 1266, 1297, 1424
BmuI ACTGGG 2 cut(s) 571, 646
BpmI CTGGAG 1 cut(s) 86
BpuEI CTTGAG 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 274
BsaHI GRCGYC 1 cut(s) 8
BsaI GGTCTC 1 cut(s) 104
BsaJI CCNNGG 9 cut(s) 113, 363, 393, 647, 780, 883, 980, 1042, 1078
BsaXI ACNNNNNCTCC 6 cut(s) 758, 788, 848, 878, 1277, 1307
Bsc4I CCNNNNNNNGG 6 cut(s) 263, 284, 399, 711, 923, 1066
Bse118I RCCGGY 2 cut(s) 734, 1094
Bse1I ACTGG 7 cut(s) 31, 50, 406, 566, 641, 901, 1419
Bse21I CCTNAGG 1 cut(s) 283
BseBI CCWGG 2 cut(s) 114, 884
BseDI CCNNGG 9 cut(s) 113, 363, 393, 647, 780, 883, 980, 1042, 1078
BseGI GGATG 9 cut(s) 123, 486, 729, 734, 944, 1220, 1281, 1396, 1415
BseLI CCNNNNNNNGG 6 cut(s) 263, 284, 399, 711, 923, 1066
BseNI ACTGG 7 cut(s) 31, 50, 406, 566, 641, 901, 1419
BseRI GAGGAG 2 cut(s) 766, 1298
BseXI GCAGC 6 cut(s) 237, 240, 298, 907, 956, 984
BseYI CCCAGC 2 cut(s) 210, 454
Bsh1236I CGCG 3 cut(s) 419, 761, 1152
BshNI GGYRCC 1 cut(s) 1424
BsiSI CCGG 7 cut(s) 41, 273, 582, 705, 735, 1071, 1095
BsiWI CGTACG 2 cut(s) 15, 756
BslFI GGGAC 1 cut(s) 257
BslI CCNNNNNNNGG 6 cut(s) 263, 284, 399, 711, 923, 1066
BsmAI GTCTC 4 cut(s) 104, 350, 824, 1009
BsmFI GGGAC 1 cut(s) 257
Bso31I GGTCTC 1 cut(s) 104
Bsp1286I GDGCHC 1 cut(s) 1113
Bsp1407I TGTACA 1 cut(s) 931
Bsp143I GATC 4 cut(s) 78, 751, 996, 1236
Bsp19I CCATGG 4 cut(s) 363, 393, 780, 980
BspFNI CGCG 3 cut(s) 419, 761, 1152
BspLI GGNNCC 2 cut(s) 404, 1426
BspMAI CTGCAG 1 cut(s) 925
BspMI ACCTGC 1 cut(s) 914
BspPI GGATC 1 cut(s) 746
BspT107I GGYRCC 1 cut(s) 1424
BspTNI GGTCTC 1 cut(s) 104
BsrFI RCCGGY 2 cut(s) 734, 1094
BsrGI TGTACA 1 cut(s) 931
BsrI ACTGG 7 cut(s) 31, 50, 406, 566, 641, 901, 1419
BssAI RCCGGY 2 cut(s) 734, 1094
BssECI CCNNGG 9 cut(s) 113, 363, 393, 647, 780, 883, 980, 1042, 1078
BssMI GATC 4 cut(s) 78, 751, 996, 1236
BssNI GRCGYC 1 cut(s) 8
BssSI CACGAG 1 cut(s) 814
BssT1I CCWWGG 7 cut(s) 363, 393, 647, 780, 980, 1042, 1078
Bst2BI CACGAG 1 cut(s) 814
Bst2UI CCWGG 2 cut(s) 114, 884
Bst4CI ACNGT 3 cut(s) 438, 520, 1027
Bst6I CTCTTC 2 cut(s) 1133, 1317
BstACI GRCGYC 1 cut(s) 8
BstAUI TGTACA 1 cut(s) 931
BstC8I GCNNGC 5 cut(s) 110, 279, 309, 977, 1172
BstDEI CTNAG 3 cut(s) 283, 1368, 1431
BstDSI CCRYGG 4 cut(s) 363, 393, 780, 980
BstEII GGTNACC 1 cut(s) 1228
BstENI CCTNNNNNAGG 2 cut(s) 282, 921
BstF5I GGATG 9 cut(s) 123, 486, 729, 734, 944, 1220, 1281, 1396, 1415
BstFNI CGCG 3 cut(s) 419, 761, 1152
BstH2I RGCGCY 1 cut(s) 528
BstHHI GCGC 3 cut(s) 527, 809, 1124
BstKTI GATC 4 cut(s) 81, 754, 999, 1239
BstMAI GTCTC 4 cut(s) 104, 350, 824, 1009
BstMBI GATC 4 cut(s) 78, 751, 996, 1236
BstNI CCWGG 2 cut(s) 114, 884
BstNSI RCATGY 1 cut(s) 1174
BstPI GGTNACC 1 cut(s) 1228
BstSCI CCNGG 3 cut(s) 112, 272, 882
BstSFI CTRYAG 1 cut(s) 921
BstUI CGCG 3 cut(s) 419, 761, 1152
BstV1I GCAGC 6 cut(s) 237, 240, 298, 907, 956, 984
BstX2I RGATCY 1 cut(s) 751
BstXI CCANNNNNNTGG 1 cut(s) 94
BstYI RGATCY 1 cut(s) 751
Bsu36I CCTNAGG 1 cut(s) 283
BsuI GTATCC 1 cut(s) 1067
BtgI CCRYGG 4 cut(s) 363, 393, 780, 980
BtsCI GGATG 9 cut(s) 123, 486, 729, 734, 944, 1220, 1281, 1396, 1415
BtsI GCAGTG 3 cut(s) 627, 1071, 1317
BtsIMutI CAGTG 7 cut(s) 413, 428, 559, 627, 1071, 1317, 1426
BveI ACCTGC 1 cut(s) 914
Cac8I GCNNGC 5 cut(s) 110, 279, 309, 977, 1172
CfoI GCGC 3 cut(s) 527, 809, 1124
Cfr10I RCCGGY 2 cut(s) 734, 1094
Cfr13I GGNCC 6 cut(s) 156, 178, 222, 275, 644, 732
Csp6I GTAC 6 cut(s) 16, 514, 589, 689, 757, 932
CspCI CAANNNNNGTGG 1 cut(s) 1417
CviQI GTAC 6 cut(s) 16, 514, 589, 689, 757, 932
DdeI CTNAG 3 cut(s) 283, 1368, 1431
DpnI GATC 4 cut(s) 80, 753, 998, 1238
DpnII GATC 4 cut(s) 78, 751, 996, 1236
DraIII CACNNNGTG 1 cut(s) 1066
EaeI YGGCCR 5 cut(s) 366, 420, 702, 762, 1068
Eam1104I CTCTTC 2 cut(s) 1133, 1317
EarI CTCTTC 2 cut(s) 1133, 1317
EciI GGCGGA 5 cut(s) 45, 73, 157, 558, 762
Eco130I CCWWGG 7 cut(s) 363, 393, 647, 780, 980, 1042, 1078
Eco147I AGGCCT 1 cut(s) 1328
Eco24I GRGCYC 1 cut(s) 1113
Eco31I GGTCTC 1 cut(s) 104
Eco47I GGWCC 1 cut(s) 644
Eco57I CTGAAG 1 cut(s) 591
Eco81I CCTNAGG 1 cut(s) 283
Eco91I GGTNACC 1 cut(s) 1228
EcoNI CCTNNNNNAGG 2 cut(s) 282, 921
EcoO109I RGGNCCY 1 cut(s) 644
EcoO65I GGTNACC 1 cut(s) 1228
EcoRII CCWGG 2 cut(s) 112, 882
EcoT14I CCWWGG 7 cut(s) 363, 393, 647, 780, 980, 1042, 1078
EcoT38I GRGCYC 1 cut(s) 1113
ErhI CCWWGG 7 cut(s) 363, 393, 647, 780, 980, 1042, 1078
FaqI GGGAC 1 cut(s) 257
FauI CCCGC 2 cut(s) 578, 1145
FblI GTMKAC 2 cut(s) 1002, 1161
FokI GGATG 9 cut(s) 110, 493, 736, 741, 951, 1227, 1288, 1402, 1403
FriOI GRGCYC 1 cut(s) 1113
FspAI RTGCGCAY 1 cut(s) 1123
FspBI CTAG 2 cut(s) 648, 1079
FspI TGCGCA 1 cut(s) 1123
GlaI GCGC 3 cut(s) 526, 808, 1123
GsaI CCCAGC 2 cut(s) 214, 458
GsuI CTGGAG 1 cut(s) 86
HaeII RGCGCY 1 cut(s) 528
HapII CCGG 7 cut(s) 41, 273, 582, 705, 735, 1071, 1095
HhaI GCGC 3 cut(s) 527, 809, 1124
Hin1I GRCGYC 1 cut(s) 8
Hin6I GCGC 3 cut(s) 525, 807, 1122
HinP1I GCGC 3 cut(s) 525, 807, 1122
HincII GTYRAC 2 cut(s) 163, 1033
HindII GTYRAC 2 cut(s) 163, 1033
HinfI GANTC 6 cut(s) 323, 672, 773, 817, 1017, 1264
HpaII CCGG 7 cut(s) 41, 273, 582, 705, 735, 1071, 1095
HphI GGTGA 6 cut(s) 71, 616, 664, 979, 1240, 1355
Hpy166II GTNNAC 8 cut(s) 163, 516, 831, 987, 1003, 1033, 1054, 1162
Hpy188I TCNGA 3 cut(s) 875, 1214, 1390
Hpy188III TCNNGA 2 cut(s) 103, 1141
Hpy8I GTNNAC 8 cut(s) 163, 516, 831, 987, 1003, 1033, 1054, 1162
Hpy99I CGWCG 5 cut(s) 13, 203, 347, 524, 1031
HpyAV CCTTC 4 cut(s) 181, 199, 262, 652
HpyCH4III ACNGT 3 cut(s) 438, 520, 1027
HpyCH4IV ACGT 4 cut(s) 506, 591, 687, 698
HpyCH4V TGCA 5 cut(s) 923, 1174, 1310, 1315, 1415
HpyF3I CTNAG 3 cut(s) 283, 1368, 1431
HpySE526I ACGT 4 cut(s) 506, 591, 687, 698
Hsp92I GRCGYC 1 cut(s) 8
HspAI GCGC 3 cut(s) 525, 807, 1122
Kzo9I GATC 4 cut(s) 78, 751, 996, 1236
LmnI GCTCC 5 cut(s) 32, 135, 707, 875, 1285
Lsp1109I GCAGC 6 cut(s) 237, 240, 298, 907, 956, 984
LweI GCATC 4 cut(s) 1107, 1266, 1297, 1424
MaeI CTAG 2 cut(s) 648, 1079
MaeII ACGT 4 cut(s) 506, 591, 687, 698
MaeIII GTNAC 3 cut(s) 59, 1138, 1228
MalI GATC 4 cut(s) 80, 753, 998, 1238
MboI GATC 4 cut(s) 78, 751, 996, 1236
MboII GAAGA 8 cut(s) 157, 160, 597, 667, 841, 844, 1120, 1334
MflI RGATCY 1 cut(s) 751
MhlI GDGCHC 1 cut(s) 1113
MlsI TGGCCA 1 cut(s) 368
MluNI TGGCCA 1 cut(s) 368
MlyI GAGTC 3 cut(s) 767, 826, 1011
Mox20I TGGCCA 1 cut(s) 368
MscI TGGCCA 1 cut(s) 368
MseI TTAA 1 cut(s) 1022
MslI CAYNNNNRTG 7 cut(s) 92, 368, 564, 992, 1175, 1226, 1244
Msp20I TGGCCA 1 cut(s) 368
MspI CCGG 7 cut(s) 41, 273, 582, 705, 735, 1071, 1095
MspR9I CCNGG 3 cut(s) 114, 274, 884
MvaI CCWGG 2 cut(s) 114, 884
MvnI CGCG 3 cut(s) 419, 761, 1152
NciI CCSGG 1 cut(s) 274
NcoI CCATGG 4 cut(s) 363, 393, 780, 980
NdeII GATC 4 cut(s) 78, 751, 996, 1236
NlaIV GGNNCC 2 cut(s) 404, 1426
NmeAIII GCCGAG 1 cut(s) 1132
NmuCI GTSAC 3 cut(s) 59, 1138, 1228
NsbI TGCGCA 1 cut(s) 1123
NspI RCATGY 1 cut(s) 1174
OliI CACNNNNGTG 2 cut(s) 92, 564
PaeI GCATGC 1 cut(s) 1174
PceI AGGCCT 1 cut(s) 1328
PcsI WCGNNNNNNNCGW 1 cut(s) 198
PfeI GAWTC 3 cut(s) 323, 672, 1264
Pfl23II CGTACG 2 cut(s) 15, 756
PflMI CCANNNNNTGG 2 cut(s) 399, 1066
PleI GAGTC 3 cut(s) 767, 825, 1011
PpsI GAGTC 3 cut(s) 767, 825, 1011
PpuMI RGGWCCY 1 cut(s) 644
Psp5II RGGWCCY 1 cut(s) 644
Psp6I CCWGG 2 cut(s) 112, 882
PspEI GGTNACC 1 cut(s) 1228
PspFI CCCAGC 2 cut(s) 210, 454
PspGI CCWGG 2 cut(s) 112, 882
PspLI CGTACG 2 cut(s) 15, 756
PspN4I GGNNCC 2 cut(s) 404, 1426
PspPI GGNCC 6 cut(s) 156, 178, 222, 275, 644, 732
PspPPI RGGWCCY 1 cut(s) 644
PstI CTGCAG 1 cut(s) 925
PsuI RGATCY 1 cut(s) 751
RsaI GTAC 6 cut(s) 17, 515, 590, 690, 758, 933
RsaNI GTAC 6 cut(s) 16, 514, 589, 689, 757, 932
RseI CAYNNNNRTG 7 cut(s) 92, 368, 564, 992, 1175, 1226, 1244
SaqAI TTAA 1 cut(s) 1022
Sau3AI GATC 4 cut(s) 78, 751, 996, 1236
Sau96I GGNCC 6 cut(s) 156, 178, 222, 275, 644, 732
SchI GAGTC 3 cut(s) 767, 826, 1011
ScrFI CCNGG 3 cut(s) 114, 274, 884
SduI GDGCHC 1 cut(s) 1113
SfaNI GCATC 4 cut(s) 1107, 1266, 1297, 1424
SfcI CTRYAG 1 cut(s) 921
SinI GGWCC 1 cut(s) 644
SmiMI CAYNNNNRTG 7 cut(s) 92, 368, 564, 992, 1175, 1226, 1244
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
SphI GCATGC 1 cut(s) 1174
SseBI AGGCCT 1 cut(s) 1328
SspMI CTAG 2 cut(s) 648, 1079
StuI AGGCCT 1 cut(s) 1328
StyD4I CCNGG 3 cut(s) 112, 272, 882
StyI CCWWGG 7 cut(s) 363, 393, 647, 780, 980, 1042, 1078
TaaI ACNGT 3 cut(s) 438, 520, 1027
TaiI ACGT 4 cut(s) 509, 594, 690, 701
TaqI TCGA 2 cut(s) 840, 1235
TatI WGTACW 1 cut(s) 931
TauI GCSGC 7 cut(s) 8, 197, 422, 764, 812, 1086, 1200
TfiI GAWTC 3 cut(s) 323, 672, 1264
Tru1I TTAA 1 cut(s) 1022
Tru9I TTAA 1 cut(s) 1022
TscAI CASTG 7 cut(s) 413, 435, 566, 634, 1071, 1317, 1426
TseFI GTSAC 3 cut(s) 59, 1138, 1228
TseI GCWGC 6 cut(s) 250, 253, 311, 920, 944, 972
Tsp45I GTSAC 3 cut(s) 59, 1138, 1228
TspDTI ATGAA 5 cut(s) 163, 479, 587, 1195, 1377
TspGWI ACGGA 3 cut(s) 744, 856, 1288
TspRI CASTG 7 cut(s) 413, 435, 566, 634, 1071, 1317, 1426
Van91I CCANNNNNTGG 2 cut(s) 399, 1066
VpaK11BI GGWCC 1 cut(s) 644
XagI CCTNNNNNAGG 2 cut(s) 282, 921
XceI RCATGY 1 cut(s) 1174
XcmI CCANNNNNNNNNTGG 1 cut(s) 820
XmaJI CCTAGG 2 cut(s) 647, 1078
XmiI GTMKAC 2 cut(s) 1002, 1161
XspI CTAG 2 cut(s) 648, 1079
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.