RLG00000031902

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011634
Physical Location & Seq
Forward (+)
9336415 .. 9337300
886 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000031902

Sequence Viewer

Length: 654 bp
ATGGGTTCTGAAAATGCTACATACTTTACTGATCTCCTCAACACAGATTCAGAACTCAATGACTCTTTTTTTATCCACAACGATGGCCTCAATATCGATGGTTGCGTGTCTTCTGAAGCGCCTACTATGACATCTGAAATACCTTCTCAAAATAAACCCTCTACAAAGAGCAAAAATAGATCTACGAATTACTCAGTTCAAGAAGACCTTCTTTTGATTTTTGAAACTAACTGGGATGCTAGTTCTCTACAACACCGTTGGTCGGCAATTCAAACGGCTGTTAATAAATTTTGTGGATACTATGAACAGATTCTGAATCGACCACAAAGTGGTGAGACTGAACACAAGCTCCAACGAGCGAAAAAGATGTACAGAGACAGAGAAAAAGTTGCATTTTTGCAAGAACATAACTGGAATATCTTGAAGTATGAGCAAAAGTGGATATCGTTCAGTGCCAAGAAAGCTGCAATTGCAACTACTAGAAAAAGGAAGTCTGTAAATCCTGAACCATCTCTTCAAAATGCTTCATCTCCAATAGTTTTACATGAAGGCAATGGTGCAACTTCTGAACCTTCTTTCATGGAGCGGCCAATAGGACAAAAACAAGCTAAGGACTTGTTAAAGAAAGAAAAGGGCATTCAAAAGAGAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

218

Amino Acids

24.76

Weight (kDa)

8.94

Isoelectric Point (pI)

59.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 132 - 212 1.4e-08 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 329
AccBSI CCGCTC 1 cut(s) 586
AciI CCGC 1 cut(s) 586
AcoI YGGCCR 1 cut(s) 587
AcsI RAATTY 1 cut(s) 287
AcuI CTGAAG 1 cut(s) 135
AdeI CACNNNGTG 1 cut(s) 329
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 2 cut(s) 262, 329
AgsI TTSAA 6 cut(s) 200, 224, 272, 424, 518, 641
AloI GAACNNNNNNTCC 2 cut(s) 333, 365
AluBI AGCT 3 cut(s) 349, 464, 608
AluI AGCT 3 cut(s) 349, 464, 608
Alw26I GTCTC 2 cut(s) 329, 369
AlwNI CAGNNNCTG 1 cut(s) 313
AoxI GGCC 2 cut(s) 85, 587
ApeKI GCWGC 1 cut(s) 464
ApoI RAATTY 1 cut(s) 287
Asp700I GAANNNNTTC 2 cut(s) 207, 309
AspLEI GCGC 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 344
BbsI GAAGAC 2 cut(s) 102, 210
BbvI GCAGC 1 cut(s) 451
BccI CCATC 3 cut(s) 77, 92, 517
BceAI ACGGC 1 cut(s) 291
BciVI GTATCC 1 cut(s) 290
BcoDI GTCTC 2 cut(s) 329, 369
BfaI CTAG 2 cut(s) 240, 480
BfoI RGCGCY 1 cut(s) 122
BfuI GTATCC 1 cut(s) 290
BglII AGATCT 1 cut(s) 179
BisI GCNGC 2 cut(s) 465, 587
BlsI GCNGC 2 cut(s) 466, 588
BmrI ACTGGG 1 cut(s) 241
BmsI GCATC 1 cut(s) 226
BmuI ACTGGG 1 cut(s) 241
BpiI GAAGAC 2 cut(s) 102, 210
Bpu10I CCTNAGC 1 cut(s) 609
Bsa29I ATCGAT 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bsc4I CCNNNNNNNGG 2 cut(s) 262, 329
Bse1I ACTGG 2 cut(s) 236, 416
Bse3DI GCAATG 1 cut(s) 559
BseCI ATCGAT 1 cut(s) 96
BseGI GGATG 1 cut(s) 241
BseLI CCNNNNNNNGG 2 cut(s) 262, 329
BseMI GCAATG 1 cut(s) 559
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 2 cut(s) 236, 416
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 451
BshFI GGCC 2 cut(s) 87, 589
BshVI ATCGAT 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 262, 329
BsmAI GTCTC 2 cut(s) 329, 369
BsmI GAATGC 1 cut(s) 636
BsnI GGCC 2 cut(s) 87, 589
Bsp1407I TGTACA 1 cut(s) 369
Bsp143I GATC 2 cut(s) 31, 179
BspACI CCGC 1 cut(s) 586
BspANI GGCC 2 cut(s) 87, 589
BspCNI CTCAG 1 cut(s) 206
BspDI ATCGAT 1 cut(s) 96
BsrBI CCGCTC 1 cut(s) 586
BsrDI GCAATG 1 cut(s) 559
BsrGI TGTACA 1 cut(s) 369
BsrI ACTGG 2 cut(s) 236, 416
BssMI GATC 2 cut(s) 31, 179
Bst4CI ACNGT 1 cut(s) 257
Bst6I CTCTTC 1 cut(s) 519
BstAUI TGTACA 1 cut(s) 369
BstDEI CTNAG 2 cut(s) 193, 609
BstF5I GGATG 1 cut(s) 241
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 1 cut(s) 121
BstKTI GATC 2 cut(s) 34, 182
BstMAI GTCTC 2 cut(s) 329, 369
BstMBI GATC 2 cut(s) 31, 179
BstMWI GCNNNNNNNGC 2 cut(s) 461, 470
BstV1I GCAGC 1 cut(s) 451
BstV2I GAAGAC 2 cut(s) 102, 210
BstX2I RGATCY 1 cut(s) 179
BstXI CCANNNNNNTGG 1 cut(s) 83
BstYI RGATCY 1 cut(s) 179
Bsu15I ATCGAT 1 cut(s) 96
BsuI GTATCC 1 cut(s) 290
BsuRI GGCC 2 cut(s) 87, 589
BsuTUI ATCGAT 1 cut(s) 96
BtsCI GGATG 1 cut(s) 241
BtsIMutI CAGTG 1 cut(s) 457
CaiI CAGNNNCTG 1 cut(s) 313
CfoI GCGC 1 cut(s) 121
ClaI ATCGAT 1 cut(s) 96
Csp6I GTAC 1 cut(s) 370
CviAII CATG 2 cut(s) 545, 580
CviJI RGCY 6 cut(s) 87, 278, 349, 464, 589, 608
CviKI_1 RGCY 6 cut(s) 87, 278, 349, 464, 589, 608
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 2 cut(s) 193, 609
DpnI GATC 2 cut(s) 33, 181
DpnII GATC 2 cut(s) 31, 179
DraIII CACNNNGTG 1 cut(s) 329
EaeI YGGCCR 1 cut(s) 587
Eam1104I CTCTTC 1 cut(s) 519
EarI CTCTTC 1 cut(s) 519
Eco32I GATATC 1 cut(s) 444
Eco57I CTGAAG 1 cut(s) 135
EcoRV GATATC 1 cut(s) 444
FaeI CATG 2 cut(s) 548, 583
FaiI YATR 7 cut(s) 22, 128, 303, 408, 429, 546, 581
FalI AAGNNNNNCTT 4 cut(s) 192, 224, 195, 227
FatI CATG 2 cut(s) 544, 579
Fnu4HI GCNGC 2 cut(s) 465, 587
FokI GGATG 1 cut(s) 248
Fsp4HI GCNGC 2 cut(s) 465, 587
FspBI CTAG 2 cut(s) 240, 480
GlaI GCGC 1 cut(s) 120
GluI GCNGC 2 cut(s) 465, 587
HaeII RGCGCY 1 cut(s) 122
HaeIII GGCC 2 cut(s) 87, 589
HhaI GCGC 1 cut(s) 121
Hin1II CATG 2 cut(s) 548, 583
Hin6I GCGC 1 cut(s) 119
HinP1I GCGC 1 cut(s) 119
HinfI GANTC 4 cut(s) 47, 62, 310, 316
HphI GGTGA 1 cut(s) 344
Hpy188I TCNGA 6 cut(s) 10, 52, 115, 136, 315, 568
Hpy188III TCNNGA 3 cut(s) 200, 421, 503
HpyAV CCTTC 4 cut(s) 153, 218, 542, 582
HpyCH4III ACNGT 1 cut(s) 257
HpyCH4V TGCA 5 cut(s) 392, 400, 467, 473, 560
HpyF10VI GCNNNNNNNGC 2 cut(s) 461, 470
HpyF3I CTNAG 2 cut(s) 193, 609
Hsp92II CATG 2 cut(s) 548, 583
HspAI GCGC 1 cut(s) 119
Kzo9I GATC 2 cut(s) 31, 179
LmnI GCTCC 2 cut(s) 354, 583
LpnPI CCDG 3 cut(s) 217, 397, 516
Lsp1109I GCAGC 1 cut(s) 451
LweI GCATC 1 cut(s) 226
MaeI CTAG 2 cut(s) 240, 480
MalI GATC 2 cut(s) 33, 181
MbiI CCGCTC 1 cut(s) 586
MboI GATC 2 cut(s) 31, 179
MboII GAAGA 3 cut(s) 102, 215, 506
MfeI CAATTG 1 cut(s) 468
MflI RGATCY 1 cut(s) 179
MluCI AATT 4 cut(s) 187, 267, 287, 468
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 376
MnlI CCTC 3 cut(s) 47, 98, 169
MroXI GAANNNNTTC 2 cut(s) 207, 309
MseI TTAA 2 cut(s) 282, 620
MslI CAYNNNNRTG 1 cut(s) 81
MunI CAATTG 1 cut(s) 468
Mva1269I GAATGC 1 cut(s) 636
MwoI GCNNNNNNNGC 2 cut(s) 461, 470
NdeII GATC 2 cut(s) 31, 179
NlaIII CATG 2 cut(s) 548, 583
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PctI GAATGC 1 cut(s) 636
PdmI GAANNNNTTC 2 cut(s) 207, 309
PfeI GAWTC 3 cut(s) 47, 310, 316
PflMI CCANNNNNTGG 1 cut(s) 329
PkrI GCNGC 2 cut(s) 466, 588
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PstNI CAGNNNCTG 1 cut(s) 313
PsuI RGATCY 1 cut(s) 179
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
RseI CAYNNNNRTG 1 cut(s) 81
SaqAI TTAA 2 cut(s) 282, 620
SatI GCNGC 2 cut(s) 465, 587
Sau3AI GATC 2 cut(s) 31, 179
SchI GAGTC 1 cut(s) 56
SetI ASST 6 cut(s) 145, 210, 351, 466, 574, 610
SfaNI GCATC 1 cut(s) 226
SmiMI CAYNNNNRTG 1 cut(s) 81
Sse9I AATT 4 cut(s) 187, 267, 287, 468
SsiI CCGC 1 cut(s) 586
SspMI CTAG 2 cut(s) 240, 480
TaaI ACNGT 1 cut(s) 257
TaqI TCGA 2 cut(s) 96, 319
TasI AATT 4 cut(s) 187, 267, 287, 468
TatI WGTACW 1 cut(s) 369
TauI GCSGC 1 cut(s) 589
TfiI GAWTC 3 cut(s) 47, 310, 316
Tru1I TTAA 2 cut(s) 282, 620
Tru9I TTAA 2 cut(s) 282, 620
TscAI CASTG 1 cut(s) 457
TseI GCWGC 1 cut(s) 464
TspDTI ATGAA 4 cut(s) 318, 516, 561, 568
TspRI CASTG 1 cut(s) 457
Van91I CCANNNNNTGG 1 cut(s) 329
XapI RAATTY 1 cut(s) 287
XmnI GAANNNNTTC 2 cut(s) 207, 309
XspI CTAG 2 cut(s) 240, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.