Rh4CG409000

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0011634
Physical Location & Seq
Forward (+)
65465952 .. 65467717
1766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG409000.1

Sequence Viewer

Length: 1020 bp
ATGGACCAGATGGGTTCTGAAAATGTTACATATTTTACCGATCTCCTTAACACACCATCATCAGGACTTGATGACTCTTTTTTGATCCACAATGATGGGTTCAATACTGGTGTGTTGCCTTCTCAAGCACCTACTATGGCATCTGAAATACCTGCTCAAAATGAACCTTCTGCAAAGAGTAGACACAGGTCTACGAATTACTCAGTTCAAGAGGATGTGCTTCTTGTATCTGCATGGCTCAATGTTGGCTTAGATCCAGTGAAAGGAAATGATCAAAAAAGTTGCCAATATTGGGCTAGAATTGCAGAACAATATCATAAAAACAAGACTTTTGAAACCAACCGGGATGCTAGTTCTCTACAACATCGTTGGTCTGCAATTCAGGCAGCAGTTAATAAGTTTTGTGGATACTATGAACAGATTCTGAATCGACCACAAAGTGGTGAGACTGAACAGGACAAGCTCCAACGAGCGAAAAAGATGTACAGAGACAAAGAAAAAGTTGCATTTCTGCAAGAACATAACTGGAATATCTTGAAGTATGCGCAAAAGTGGATATCGTTTAGTGCCAAGAAAGCTGCAATTGCAACTACTAGAAAAAGGAAGCCTGTAAATCTTGAAGGGTCTCTTCAAAATGCGTCATCTCCAATAGTTTTAGATGAAGGCAATGGTGCAACTTCTGAACCTTCTTTCATGGAGCGGCCAATAGGCCAAAAACAAGCTAAGGACTTGTTAAAGAAAGACAAGGTAAAAGAGAATTTGGCTTCACAATTGGAACAATTCAGGGCATTCAAAAGAGAAACTGAGTGTAGGAAAGAAGAGCGTTTTCAATTGAGTCTTTCTCAAGAACAAAAGCTCTATATCCTCAAGGAAAAAAAGGAGCAAGCGAAACAACAACGTGAGGATGATAAAATAATGTTGATAGATATCACTACTCTACCGGAAATGCAAGCTGAATATTTTAGAGACCGTCAGGCAGAAATCATAGCAAGAAGAGCCCGTCTAAGTGAAAGTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

339

Amino Acids

39.07

Weight (kDa)

8.86

Isoelectric Point (pI)

54.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 170 - 328 1.3e-16 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 546
Acc36I ACCTGC 1 cut(s) 160
AccB7I CCANNNNNTGG 1 cut(s) 440
AccBSI CCGCTC 1 cut(s) 700
AccI GTMKAC 2 cut(s) 181, 191
AciI CCGC 1 cut(s) 700
AclWI GGATC 2 cut(s) 79, 248
AcoI YGGCCR 1 cut(s) 701
AcsI RAATTY 1 cut(s) 757
AdeI CACNNNGTG 1 cut(s) 440
AfaI GTAC 1 cut(s) 485
AfiI CCNNNNNNNGG 4 cut(s) 62, 263, 292, 440
AgsI TTSAA 8 cut(s) 103, 209, 335, 538, 620, 632, 793, 830
AluBI AGCT 5 cut(s) 463, 578, 722, 856, 953
AluI AGCT 5 cut(s) 463, 578, 722, 856, 953
Alw26I GTCTC 4 cut(s) 440, 483, 630, 960
AlwI GGATC 2 cut(s) 79, 248
AlwNI CAGNNNCTG 1 cut(s) 424
AoxI GGCC 2 cut(s) 701, 709
ApeKI GCWGC 2 cut(s) 386, 578
ApoI RAATTY 1 cut(s) 757
Asp700I GAANNNNTTC 1 cut(s) 420
AspLEI GCGC 1 cut(s) 547
AspS9I GGNCC 1 cut(s) 4
AsuC2I CCSGG 1 cut(s) 344
AsuHPI GGTGA 1 cut(s) 455
AvaII GGWCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 1000
BbvI GCAGC 2 cut(s) 398, 565
BccI CCATC 3 cut(s) 4, 64, 89
BciVI GTATCC 1 cut(s) 401
BclI TGATCA 1 cut(s) 271
BcnI CCSGG 1 cut(s) 344
BcoDI GTCTC 4 cut(s) 440, 483, 630, 960
BfaI CTAG 3 cut(s) 297, 351, 594
BfuAI ACCTGC 1 cut(s) 160
BfuI GTATCC 1 cut(s) 401
BisI GCNGC 3 cut(s) 387, 579, 701
BlsI GCNGC 3 cut(s) 388, 580, 702
Bme1390I CCNGG 1 cut(s) 344
Bme18I GGWCC 1 cut(s) 4
BmgT120I GGNCC 1 cut(s) 4
BmrFI CCNGG 1 cut(s) 344
BmsI GCATC 2 cut(s) 149, 337
BoxI GACNNNNGTC 1 cut(s) 187
BplI GAGNNNNNCTC 2 cut(s) 826, 858
Bpu10I CCTNAGC 1 cut(s) 723
BpuEI CTTGAG 3 cut(s) 108, 828, 851
BpuMI CCSGG 1 cut(s) 344
BsaBI GATNNNNATC 1 cut(s) 926
BsaI GGTCTC 2 cut(s) 630, 960
BsaWI WCCGGW 1 cut(s) 940
Bsc4I CCNNNNNNNGG 4 cut(s) 62, 263, 292, 440
Bse1I ACTGG 3 cut(s) 112, 257, 530
Bse3DI GCAATG 1 cut(s) 673
Bse8I GATNNNNATC 1 cut(s) 926
BseGI GGATG 3 cut(s) 220, 352, 910
BseJI GATNNNNATC 1 cut(s) 926
BseLI CCNNNNNNNGG 4 cut(s) 62, 263, 292, 440
BseMI GCAATG 1 cut(s) 673
BseMII CTCAG 2 cut(s) 216, 795
BseNI ACTGG 3 cut(s) 112, 257, 530
BseXI GCAGC 2 cut(s) 398, 565
BshFI GGCC 2 cut(s) 703, 711
BsiSI CCGG 2 cut(s) 343, 941
BslI CCNNNNNNNGG 4 cut(s) 62, 263, 292, 440
BsmAI GTCTC 4 cut(s) 440, 483, 630, 960
BsmI GAATGC 1 cut(s) 788
BsnI GGCC 2 cut(s) 703, 711
Bso31I GGTCTC 2 cut(s) 630, 960
Bsp1286I GDGCHC 1 cut(s) 1000
Bsp1407I TGTACA 1 cut(s) 483
Bsp143I GATC 4 cut(s) 40, 84, 253, 271
BspACI CCGC 1 cut(s) 700
BspANI GGCC 2 cut(s) 703, 711
BspCNI CTCAG 2 cut(s) 215, 796
BspMI ACCTGC 1 cut(s) 160
BspPI GGATC 2 cut(s) 79, 248
BspQI GCTCTTC 2 cut(s) 813, 988
BspTNI GGTCTC 2 cut(s) 630, 960
BsrBI CCGCTC 1 cut(s) 700
BsrDI GCAATG 1 cut(s) 673
BsrGI TGTACA 1 cut(s) 483
BsrI ACTGG 3 cut(s) 112, 257, 530
BssMI GATC 4 cut(s) 40, 84, 253, 271
Bst4CI ACNGT 1 cut(s) 971
Bst6I CTCTTC 3 cut(s) 633, 813, 988
BstAUI TGTACA 1 cut(s) 483
BstC8I GCNNGC 2 cut(s) 885, 951
BstDEI CTNAG 5 cut(s) 202, 250, 723, 804, 1004
BstF5I GGATG 3 cut(s) 220, 352, 910
BstHHI GCGC 1 cut(s) 547
BstKTI GATC 4 cut(s) 43, 87, 256, 274
BstMAI GTCTC 4 cut(s) 440, 483, 630, 960
BstMBI GATC 4 cut(s) 40, 84, 253, 271
BstMWI GCNNNNNNNGC 5 cut(s) 302, 383, 575, 584, 995
BstPAI GACNNNNGTC 1 cut(s) 187
BstSCI CCNGG 1 cut(s) 342
BstV1I GCAGC 2 cut(s) 398, 565
BstX2I RGATCY 1 cut(s) 253
BstXI CCANNNNNNTGG 1 cut(s) 95
BstYI RGATCY 1 cut(s) 253
BsuI GTATCC 1 cut(s) 401
BsuRI GGCC 2 cut(s) 703, 711
BtsCI GGATG 3 cut(s) 220, 352, 910
BtsIMutI CAGTG 1 cut(s) 264
BveI ACCTGC 1 cut(s) 160
Cac8I GCNNGC 2 cut(s) 885, 951
CaiI CAGNNNCTG 1 cut(s) 424
CfoI GCGC 1 cut(s) 547
Cfr13I GGNCC 1 cut(s) 4
CseI GACGC 1 cut(s) 627
Csp6I GTAC 1 cut(s) 484
CviAII CATG 2 cut(s) 234, 694
CviQI GTAC 1 cut(s) 484
DdeI CTNAG 5 cut(s) 202, 250, 723, 804, 1004
DpnI GATC 4 cut(s) 42, 86, 255, 273
DpnII GATC 4 cut(s) 40, 84, 253, 271
DraIII CACNNNGTG 1 cut(s) 440
EaeI YGGCCR 1 cut(s) 701
Eam1104I CTCTTC 3 cut(s) 633, 813, 988
EarI CTCTTC 3 cut(s) 633, 813, 988
Eco24I GRGCYC 1 cut(s) 1000
Eco31I GGTCTC 2 cut(s) 630, 960
Eco32I GATATC 2 cut(s) 558, 928
Eco47I GGWCC 1 cut(s) 4
EcoRV GATATC 2 cut(s) 558, 928
EcoT38I GRGCYC 1 cut(s) 1000
FaeI CATG 2 cut(s) 237, 697
FalI AAGNNNNNCTT 2 cut(s) 612, 644
FatI CATG 2 cut(s) 233, 693
FbaI TGATCA 1 cut(s) 271
FblI GTMKAC 2 cut(s) 181, 191
Fnu4HI GCNGC 3 cut(s) 387, 579, 701
FokI GGATG 3 cut(s) 227, 359, 917
FriOI GRGCYC 1 cut(s) 1000
Fsp4HI GCNGC 3 cut(s) 387, 579, 701
FspBI CTAG 3 cut(s) 297, 351, 594
FspI TGCGCA 1 cut(s) 546
GlaI GCGC 1 cut(s) 546
GluI GCNGC 3 cut(s) 387, 579, 701
HaeIII GGCC 2 cut(s) 703, 711
HapII CCGG 2 cut(s) 343, 941
HgaI GACGC 1 cut(s) 627
HhaI GCGC 1 cut(s) 547
Hin1II CATG 2 cut(s) 237, 697
Hin6I GCGC 1 cut(s) 545
HinP1I GCGC 1 cut(s) 545
HinfI GANTC 4 cut(s) 74, 421, 427, 835
HpaII CCGG 2 cut(s) 343, 941
HphI GGTGA 1 cut(s) 455
Hpy166II GTNNAC 2 cut(s) 182, 192
Hpy188I TCNGA 4 cut(s) 19, 145, 426, 682
Hpy188III TCNNGA 5 cut(s) 63, 209, 535, 617, 845
Hpy8I GTNNAC 2 cut(s) 182, 192
HpyAV CCTTC 5 cut(s) 129, 177, 614, 656, 696
HpyCH4III ACNGT 1 cut(s) 971
HpyCH4IV ACGT 1 cut(s) 898
HpyF10VI GCNNNNNNNGC 5 cut(s) 302, 383, 575, 584, 995
HpyF3I CTNAG 5 cut(s) 202, 250, 723, 804, 1004
HpySE526I ACGT 1 cut(s) 898
Hsp92II CATG 2 cut(s) 237, 697
HspAI GCGC 1 cut(s) 545
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 4 cut(s) 40, 84, 253, 271
LguI GCTCTTC 2 cut(s) 813, 988
LmnI GCTCC 3 cut(s) 468, 697, 880
Lsp1109I GCAGC 2 cut(s) 398, 565
LweI GCATC 2 cut(s) 149, 337
MaeI CTAG 3 cut(s) 297, 351, 594
MaeII ACGT 1 cut(s) 898
MaeIII GTNAC 1 cut(s) 25
MalI GATC 4 cut(s) 42, 86, 255, 273
MbiI CCGCTC 1 cut(s) 700
MboI GATC 4 cut(s) 40, 84, 253, 271
MboII GAAGA 3 cut(s) 620, 830, 1005
MfeI CAATTG 3 cut(s) 582, 770, 830
MflI RGATCY 1 cut(s) 253
MhlI GDGCHC 1 cut(s) 1000
MluCI AATT 8 cut(s) 196, 300, 378, 582, 757, 770, 779, 830
MlyI GAGTC 2 cut(s) 68, 844
MmeI TCCRAC 1 cut(s) 490
MnlI CCTC 3 cut(s) 205, 875, 895
MroXI GAANNNNTTC 1 cut(s) 420
MseI TTAA 3 cut(s) 48, 393, 734
MslI CAYNNNNRTG 1 cut(s) 93
MspI CCGG 2 cut(s) 343, 941
MspR9I CCNGG 1 cut(s) 344
MunI CAATTG 3 cut(s) 582, 770, 830
Mva1269I GAATGC 1 cut(s) 788
MwoI GCNNNNNNNGC 5 cut(s) 302, 383, 575, 584, 995
NciI CCSGG 1 cut(s) 344
NdeII GATC 4 cut(s) 40, 84, 253, 271
NlaIII CATG 2 cut(s) 237, 697
NsbI TGCGCA 1 cut(s) 546
PciSI GCTCTTC 2 cut(s) 813, 988
PctI GAATGC 1 cut(s) 788
PdmI GAANNNNTTC 1 cut(s) 420
PfeI GAWTC 2 cut(s) 421, 427
PflMI CCANNNNNTGG 1 cut(s) 440
PkrI GCNGC 3 cut(s) 388, 580, 702
PleI GAGTC 2 cut(s) 68, 843
PpsI GAGTC 2 cut(s) 68, 843
PshAI GACNNNNGTC 1 cut(s) 187
PspPI GGNCC 1 cut(s) 4
PstNI CAGNNNCTG 1 cut(s) 424
PsuI RGATCY 1 cut(s) 253
RsaI GTAC 1 cut(s) 485
RsaNI GTAC 1 cut(s) 484
RseI CAYNNNNRTG 1 cut(s) 93
SapI GCTCTTC 2 cut(s) 813, 988
SaqAI TTAA 3 cut(s) 48, 393, 734
SatI GCNGC 3 cut(s) 387, 579, 701
Sau3AI GATC 4 cut(s) 40, 84, 253, 271
Sau96I GGNCC 1 cut(s) 4
SchI GAGTC 2 cut(s) 68, 844
ScrFI CCNGG 1 cut(s) 344
SduI GDGCHC 1 cut(s) 1000
SfaNI GCATC 2 cut(s) 149, 337
SinI GGWCC 1 cut(s) 4
SmiMI CAYNNNNRTG 1 cut(s) 93
SmlI CTYRAG 3 cut(s) 123, 843, 866
SmoI CTYRAG 3 cut(s) 123, 843, 866
Sse9I AATT 8 cut(s) 196, 300, 378, 582, 757, 770, 779, 830
SsiI CCGC 1 cut(s) 700
SspI AATATT 2 cut(s) 290, 959
SspMI CTAG 3 cut(s) 297, 351, 594
StyD4I CCNGG 1 cut(s) 342
TaaI ACNGT 1 cut(s) 971
TaiI ACGT 1 cut(s) 901
TaqI TCGA 1 cut(s) 430
TasI AATT 8 cut(s) 196, 300, 378, 582, 757, 770, 779, 830
TatI WGTACW 1 cut(s) 483
TauI GCSGC 1 cut(s) 703
TfiI GAWTC 2 cut(s) 421, 427
Tru1I TTAA 3 cut(s) 48, 393, 734
Tru9I TTAA 3 cut(s) 48, 393, 734
TscAI CASTG 1 cut(s) 264
TseI GCWGC 2 cut(s) 386, 578
TspDTI ATGAA 4 cut(s) 177, 429, 675, 682
TspRI CASTG 1 cut(s) 264
Van91I CCANNNNNTGG 1 cut(s) 440
VpaK11BI GGWCC 1 cut(s) 4
XapI RAATTY 1 cut(s) 757
XmiI GTMKAC 2 cut(s) 181, 191
XmnI GAANNNNTTC 1 cut(s) 420
XspI CTAG 3 cut(s) 297, 351, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.