RLG00000032919

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0011634
Physical Location & Seq
Forward (+)
20797878 .. 20798981
1104 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032919

Sequence Viewer

Length: 906 bp
ATGCAGATGGGTGCTGAAAATGTTACATATTTTACCGATCTCCTTAAAACATCATCAGGACTTGATGACTCTTTTTTGATCCACAATGATGGGTTCAATGCTGATGGTGTATTGTCTTCTCAAGCACCTACTATGACATCTGAAATTCCTGCTCAAAATGAACCTTCTGTAAAGAGCAGACACAGAATTGCAGAACACTATCATAAAAACAAGACTTTCGAAACCAGCCGGGATGCTAGTTCTCTACAACATCGTTGGTCGGCAATTCAGGCAGCAGTTAATAAGTTTTGTGGATACTATGAACAAATTCTGAATCGACCACAAAGTGGTGAGACTGAACAGGACAAGCTCCAAAGAGCAAAAAAGATGTACAGAGACAAAGAAAAAGTTGCATTTCTGCAAGAACATAATTGGAATATCTGGAAGTATGAGCAAAAGTGGATGTCGTTTAGTGCCAAGAAAGCTGCAATTGCAACTACTAGAAAAAGGAAGCCTGTAAATCCTGAAGGGTCTCTTCAAAATGCGTCATCTCCAATAGTTTTAGATGAAGGCAATGGTGCAACTTCTGAACCTTCTTTCGTGGAGCGGCCAATAGGCCAAAAACAAGCTAAGGACTTGTTAAAGAAAGAAAAGGTAAAAGAGAATGTGGCTTCACAATTGGAACAATTCAGGGCATTCAAAAGAGAAACTGAGCGTAGGAAAGAAGAGCGTTTTCAATTGAGTCTTTCTCAAGAAGAGAAGCTCTATATCCTCAAGGAAAAAAAGGAGCAAGCGAAACAACAACGTGAGGATGATAAAATAATGTTGATAGATATCACTACTTTGCCGGAAATGCAAGCTGAATATTTTAGAGACCGTCAGGCAGAAATCCTGGCAAGAAGAGCCCGTCTAACTGAAAGTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

302

Amino Acids

34.97

Weight (kDa)

9.12

Isoelectric Point (pI)

61.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 132 - 290 4.9e-16 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 326
AccBSI CCGCTC 1 cut(s) 586
AciI CCGC 1 cut(s) 586
AclWI GGATC 1 cut(s) 73
AcoI YGGCCR 1 cut(s) 587
AcsI RAATTY 2 cut(s) 144, 306
AcuI CTGAAG 1 cut(s) 525
AdeI CACNNNGTG 1 cut(s) 326
AfaI GTAC 1 cut(s) 371
AfiI CCNNNNNNNGG 1 cut(s) 326
AgsI TTSAA 4 cut(s) 97, 518, 679, 716
AjnI CCWGG 1 cut(s) 870
AluBI AGCT 5 cut(s) 349, 464, 608, 742, 839
AluI AGCT 5 cut(s) 349, 464, 608, 742, 839
Alw26I GTCTC 4 cut(s) 326, 369, 516, 846
AlwI GGATC 1 cut(s) 73
AoxI GGCC 2 cut(s) 587, 595
ApeKI GCWGC 2 cut(s) 272, 464
ApoI RAATTY 2 cut(s) 144, 306
Asp700I GAANNNNTTC 1 cut(s) 306
AsuC2I CCSGG 1 cut(s) 230
AsuHPI GGTGA 1 cut(s) 341
AsuII TTCGAA 1 cut(s) 219
BanII GRGCYC 1 cut(s) 886
BbsI GAAGAC 1 cut(s) 108
BbvI GCAGC 2 cut(s) 284, 451
BccI CCATC 2 cut(s) 83, 98
BciT130I CCWGG 1 cut(s) 872
BciVI GTATCC 1 cut(s) 287
BcnI CCSGG 1 cut(s) 230
BcoDI GTCTC 4 cut(s) 326, 369, 516, 846
BfaI CTAG 2 cut(s) 237, 480
BfuI GTATCC 1 cut(s) 287
BisI GCNGC 3 cut(s) 273, 465, 587
BlsI GCNGC 3 cut(s) 274, 466, 588
Bme1390I CCNGG 2 cut(s) 230, 872
BmrFI CCNGG 2 cut(s) 230, 872
BmsI GCATC 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 108
BplI GAGNNNNNCTC 2 cut(s) 712, 744
Bpu10I CCTNAGC 1 cut(s) 609
Bpu14I TTCGAA 1 cut(s) 219
BpuEI CTTGAG 3 cut(s) 105, 714, 737
BpuMI CCSGG 1 cut(s) 230
BsaBI GATNNNNATC 1 cut(s) 812
BsaI GGTCTC 2 cut(s) 516, 846
Bsc4I CCNNNNNNNGG 1 cut(s) 326
Bse3DI GCAATG 1 cut(s) 559
Bse8I GATNNNNATC 1 cut(s) 812
BseBI CCWGG 1 cut(s) 872
BseGI GGATG 3 cut(s) 238, 447, 796
BseJI GATNNNNATC 1 cut(s) 812
BseLI CCNNNNNNNGG 1 cut(s) 326
BseMI GCAATG 1 cut(s) 559
BseMII CTCAG 1 cut(s) 681
BseXI GCAGC 2 cut(s) 284, 451
BshFI GGCC 2 cut(s) 589, 597
BsiSI CCGG 2 cut(s) 229, 827
BslI CCNNNNNNNGG 1 cut(s) 326
BsmAI GTCTC 4 cut(s) 326, 369, 516, 846
BsmI GAATGC 1 cut(s) 674
BsnI GGCC 2 cut(s) 589, 597
Bso31I GGTCTC 2 cut(s) 516, 846
Bsp119I TTCGAA 1 cut(s) 219
Bsp1286I GDGCHC 1 cut(s) 886
Bsp1407I TGTACA 1 cut(s) 369
Bsp143I GATC 2 cut(s) 37, 78
BspACI CCGC 1 cut(s) 586
BspANI GGCC 2 cut(s) 589, 597
BspCNI CTCAG 1 cut(s) 682
BspPI GGATC 1 cut(s) 73
BspQI GCTCTTC 2 cut(s) 699, 874
BspT104I TTCGAA 1 cut(s) 219
BspTNI GGTCTC 2 cut(s) 516, 846
BsrBI CCGCTC 1 cut(s) 586
BsrDI GCAATG 1 cut(s) 559
BsrGI TGTACA 1 cut(s) 369
BssMI GATC 2 cut(s) 37, 78
Bst2UI CCWGG 1 cut(s) 872
Bst4CI ACNGT 1 cut(s) 857
Bst6I CTCTTC 4 cut(s) 519, 699, 729, 874
BstAUI TGTACA 1 cut(s) 369
BstBI TTCGAA 1 cut(s) 219
BstC8I GCNNGC 2 cut(s) 771, 837
BstDEI CTNAG 2 cut(s) 609, 690
BstF5I GGATG 3 cut(s) 238, 447, 796
BstKTI GATC 2 cut(s) 40, 81
BstMAI GTCTC 4 cut(s) 326, 369, 516, 846
BstMBI GATC 2 cut(s) 37, 78
BstMWI GCNNNNNNNGC 5 cut(s) 269, 461, 470, 832, 881
BstNI CCWGG 1 cut(s) 872
BstSCI CCNGG 2 cut(s) 228, 870
BstV1I GCAGC 2 cut(s) 284, 451
BstV2I GAAGAC 1 cut(s) 108
BstXI CCANNNNNNTGG 1 cut(s) 89
BsuI GTATCC 1 cut(s) 287
BsuRI GGCC 2 cut(s) 589, 597
BtsCI GGATG 3 cut(s) 238, 447, 796
Cac8I GCNNGC 2 cut(s) 771, 837
CseI GACGC 1 cut(s) 513
Csp6I GTAC 1 cut(s) 370
CviQI GTAC 1 cut(s) 370
DdeI CTNAG 2 cut(s) 609, 690
DpnI GATC 2 cut(s) 39, 80
DpnII GATC 2 cut(s) 37, 78
DraIII CACNNNGTG 1 cut(s) 326
EaeI YGGCCR 1 cut(s) 587
Eam1104I CTCTTC 4 cut(s) 519, 699, 729, 874
EarI CTCTTC 4 cut(s) 519, 699, 729, 874
Eco24I GRGCYC 1 cut(s) 886
Eco31I GGTCTC 2 cut(s) 516, 846
Eco32I GATATC 1 cut(s) 814
Eco57I CTGAAG 1 cut(s) 525
EcoRII CCWGG 1 cut(s) 870
EcoRV GATATC 1 cut(s) 814
EcoT38I GRGCYC 1 cut(s) 886
FaiI YATR 8 cut(s) 28, 134, 204, 300, 408, 429, 747, 902
FalI AAGNNNNNCTT 2 cut(s) 498, 530
Fnu4HI GCNGC 3 cut(s) 273, 465, 587
FokI GGATG 3 cut(s) 245, 454, 803
FriOI GRGCYC 1 cut(s) 886
Fsp4HI GCNGC 3 cut(s) 273, 465, 587
FspBI CTAG 2 cut(s) 237, 480
GluI GCNGC 3 cut(s) 273, 465, 587
HaeIII GGCC 2 cut(s) 589, 597
HapII CCGG 2 cut(s) 229, 827
HgaI GACGC 1 cut(s) 513
HinfI GANTC 3 cut(s) 68, 313, 721
HpaII CCGG 2 cut(s) 229, 827
HphI GGTGA 1 cut(s) 341
Hpy188I TCNGA 3 cut(s) 142, 312, 568
Hpy188III TCNNGA 4 cut(s) 57, 421, 503, 731
HpyAV CCTTC 4 cut(s) 174, 500, 542, 582
HpyCH4III ACNGT 1 cut(s) 857
HpyCH4IV ACGT 1 cut(s) 784
HpyCH4V TGCA 8 cut(s) 4, 191, 392, 400, 467, 473, 560, 835
HpyF10VI GCNNNNNNNGC 5 cut(s) 269, 461, 470, 832, 881
HpyF3I CTNAG 2 cut(s) 609, 690
HpySE526I ACGT 1 cut(s) 784
Kzo9I GATC 2 cut(s) 37, 78
LguI GCTCTTC 2 cut(s) 699, 874
LmnI GCTCC 3 cut(s) 354, 583, 766
Lsp1109I GCAGC 2 cut(s) 284, 451
LweI GCATC 1 cut(s) 223
MaeI CTAG 2 cut(s) 237, 480
MaeII ACGT 1 cut(s) 784
MaeIII GTNAC 1 cut(s) 22
MalI GATC 2 cut(s) 39, 80
MbiI CCGCTC 1 cut(s) 586
MboI GATC 2 cut(s) 37, 78
MboII GAAGA 5 cut(s) 108, 506, 716, 746, 891
MfeI CAATTG 3 cut(s) 468, 656, 716
MhlI GDGCHC 1 cut(s) 886
MluCI AATT 9 cut(s) 144, 186, 264, 306, 409, 468, 656, 665, 716
MlyI GAGTC 2 cut(s) 62, 730
MnlI CCTC 2 cut(s) 761, 781
MroXI GAANNNNTTC 1 cut(s) 306
MseI TTAA 3 cut(s) 45, 279, 620
MslI CAYNNNNRTG 1 cut(s) 87
MspI CCGG 2 cut(s) 229, 827
MspR9I CCNGG 2 cut(s) 230, 872
MunI CAATTG 3 cut(s) 468, 656, 716
Mva1269I GAATGC 1 cut(s) 674
MvaI CCWGG 1 cut(s) 872
MwoI GCNNNNNNNGC 5 cut(s) 269, 461, 470, 832, 881
NciI CCSGG 1 cut(s) 230
NdeII GATC 2 cut(s) 37, 78
NspV TTCGAA 1 cut(s) 219
PciSI GCTCTTC 2 cut(s) 699, 874
PctI GAATGC 1 cut(s) 674
PdmI GAANNNNTTC 1 cut(s) 306
PfeI GAWTC 1 cut(s) 313
PflMI CCANNNNNTGG 1 cut(s) 326
PkrI GCNGC 3 cut(s) 274, 466, 588
PleI GAGTC 2 cut(s) 62, 729
PpsI GAGTC 2 cut(s) 62, 729
Psp6I CCWGG 1 cut(s) 870
PspGI CCWGG 1 cut(s) 870
RsaI GTAC 1 cut(s) 371
RsaNI GTAC 1 cut(s) 370
RseI CAYNNNNRTG 1 cut(s) 87
SapI GCTCTTC 2 cut(s) 699, 874
SaqAI TTAA 3 cut(s) 45, 279, 620
SatI GCNGC 3 cut(s) 273, 465, 587
Sau3AI GATC 2 cut(s) 37, 78
SchI GAGTC 2 cut(s) 62, 730
ScrFI CCNGG 2 cut(s) 230, 872
SduI GDGCHC 1 cut(s) 886
SfaNI GCATC 1 cut(s) 223
SfuI TTCGAA 1 cut(s) 219
SmiMI CAYNNNNRTG 1 cut(s) 87
SmlI CTYRAG 3 cut(s) 120, 729, 752
SmoI CTYRAG 3 cut(s) 120, 729, 752
Sse9I AATT 9 cut(s) 144, 186, 264, 306, 409, 468, 656, 665, 716
SsiI CCGC 1 cut(s) 586
SspI AATATT 1 cut(s) 845
SspMI CTAG 2 cut(s) 237, 480
StyD4I CCNGG 2 cut(s) 228, 870
TaaI ACNGT 1 cut(s) 857
TaiI ACGT 1 cut(s) 787
TaqI TCGA 2 cut(s) 219, 316
TasI AATT 9 cut(s) 144, 186, 264, 306, 409, 468, 656, 665, 716
TatI WGTACW 1 cut(s) 369
TauI GCSGC 1 cut(s) 589
TfiI GAWTC 1 cut(s) 313
Tru1I TTAA 3 cut(s) 45, 279, 620
Tru9I TTAA 3 cut(s) 45, 279, 620
TseI GCWGC 2 cut(s) 272, 464
TspDTI ATGAA 3 cut(s) 174, 315, 561
Van91I CCANNNNNTGG 1 cut(s) 326
XapI RAATTY 2 cut(s) 144, 306
XmnI GAANNNNTTC 1 cut(s) 306
XspI CTAG 2 cut(s) 237, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.