RLG00000029965

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0011634
Physical Location & Seq
Reverse (-)
52313769 .. 52314614
846 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029965

Sequence Viewer

Length: 519 bp
ATGGGTTCTGAAAATGCTACATACTTTACCGAACTCCTCAACACAGATTCAGAACTTAATGACTCTTTTTTTATCCACAACGATGGCCTCAATATCGATGGTTGCGTGTCTTCTGAAGCACCTGCTATGACATCTGAAATACCTTCTCAAAATAAAGCCTCTGCAAAGAGCAAAAATAGATCTACAAATTACTCAGTTCAAGAAGACCTTCTTTTGCTCCAACGAGCGAAAAAGATGTACATGGACAGAGAAAAAGTTGCATTTTTGCAAGAACATAACTGGAATATCTTGAAGTATGAGCAAAAGTGGTTATCGTTCAGTGCCAAGAAAGCTGCAATTGCAACTACTAGAAAAAGGAAGTCTGTAAATCCTGAAGCGTCTCTTCAAAATGCTTCATCTCCAATAGTTTTAGATGAAGGCGATGGTGCAATTTCTGATCCTTCTTTCATGGAGCGGCCAATAGGACAAAAACAAGCTAAAGACTTGTTAAAGAAAGAAAAGGTAAAAGAGCAAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

173

Amino Acids

19.31

Weight (kDa)

6.75

Isoelectric Point (pI)

59.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 88 - 169 1.6e-08 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 130
Acc36I ACCTGC 1 cut(s) 130
AccBSI CCGCTC 1 cut(s) 454
AciI CCGC 1 cut(s) 454
AclWI GGATC 1 cut(s) 431
AcoI YGGCCR 1 cut(s) 455
AcuI CTGAAG 2 cut(s) 135, 393
AfaI GTAC 1 cut(s) 239
AgsI TTSAA 3 cut(s) 200, 292, 386
AluBI AGCT 2 cut(s) 332, 476
AluI AGCT 2 cut(s) 332, 476
Alw26I GTCTC 1 cut(s) 384
AlwI GGATC 1 cut(s) 431
AoxI GGCC 2 cut(s) 85, 455
ApeKI GCWGC 1 cut(s) 332
Asp700I GAANNNNTTC 1 cut(s) 207
BbsI GAAGAC 2 cut(s) 102, 210
BbvI GCAGC 1 cut(s) 319
BccI CCATC 3 cut(s) 77, 92, 416
BcoDI GTCTC 1 cut(s) 384
BfaI CTAG 1 cut(s) 348
BfuAI ACCTGC 1 cut(s) 130
BglII AGATCT 1 cut(s) 179
BisI GCNGC 2 cut(s) 333, 455
BlsI GCNGC 2 cut(s) 334, 456
BpiI GAAGAC 2 cut(s) 102, 210
Bsa29I ATCGAT 1 cut(s) 96
Bse1I ACTGG 1 cut(s) 284
BseCI ATCGAT 1 cut(s) 96
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 1 cut(s) 284
BseRI GAGGAG 1 cut(s) 26
BseXI GCAGC 1 cut(s) 319
BshFI GGCC 2 cut(s) 87, 457
BshVI ATCGAT 1 cut(s) 96
BsmAI GTCTC 1 cut(s) 384
BsmBI CGTCTC 1 cut(s) 384
BsnI GGCC 2 cut(s) 87, 457
Bsp1407I TGTACA 1 cut(s) 237
Bsp143I GATC 2 cut(s) 179, 436
BspACI CCGC 1 cut(s) 454
BspANI GGCC 2 cut(s) 87, 457
BspCNI CTCAG 1 cut(s) 206
BspDI ATCGAT 1 cut(s) 96
BspMI ACCTGC 1 cut(s) 130
BspPI GGATC 1 cut(s) 431
BsrBI CCGCTC 1 cut(s) 454
BsrGI TGTACA 1 cut(s) 237
BsrI ACTGG 1 cut(s) 284
BssMI GATC 2 cut(s) 179, 436
Bst6I CTCTTC 1 cut(s) 387
BstAUI TGTACA 1 cut(s) 237
BstC8I GCNNGC 1 cut(s) 513
BstDEI CTNAG 1 cut(s) 193
BstKTI GATC 2 cut(s) 182, 439
BstMAI GTCTC 1 cut(s) 384
BstMBI GATC 2 cut(s) 179, 436
BstMWI GCNNNNNNNGC 2 cut(s) 329, 338
BstV1I GCAGC 1 cut(s) 319
BstV2I GAAGAC 2 cut(s) 102, 210
BstX2I RGATCY 1 cut(s) 179
BstXI CCANNNNNNTGG 1 cut(s) 83
BstYI RGATCY 1 cut(s) 179
Bsu15I ATCGAT 1 cut(s) 96
BsuRI GGCC 2 cut(s) 87, 457
BsuTUI ATCGAT 1 cut(s) 96
BtgZI GCGATG 1 cut(s) 435
BtsIMutI CAGTG 1 cut(s) 325
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 1 cut(s) 513
ClaI ATCGAT 1 cut(s) 96
CseI GACGC 1 cut(s) 366
Csp6I GTAC 1 cut(s) 238
CviAII CATG 2 cut(s) 241, 448
CviJI RGCY 5 cut(s) 87, 158, 332, 457, 476
CviKI_1 RGCY 5 cut(s) 87, 158, 332, 457, 476
CviQI GTAC 1 cut(s) 238
DdeI CTNAG 1 cut(s) 193
DpnI GATC 2 cut(s) 181, 438
DpnII GATC 2 cut(s) 179, 436
EaeI YGGCCR 1 cut(s) 455
Eam1104I CTCTTC 1 cut(s) 387
EarI CTCTTC 1 cut(s) 387
Eco57I CTGAAG 2 cut(s) 135, 393
Esp3I CGTCTC 1 cut(s) 384
FaeI CATG 2 cut(s) 244, 451
FaiI YATR 7 cut(s) 22, 128, 242, 276, 297, 449, 517
FalI AAGNNNNNCTT 6 cut(s) 192, 224, 195, 227, 366, 398
FatI CATG 2 cut(s) 240, 447
Fnu4HI GCNGC 2 cut(s) 333, 455
Fsp4HI GCNGC 2 cut(s) 333, 455
FspBI CTAG 1 cut(s) 348
GluI GCNGC 2 cut(s) 333, 455
HaeIII GGCC 2 cut(s) 87, 457
HgaI GACGC 1 cut(s) 366
Hin1II CATG 2 cut(s) 244, 451
HinfI GANTC 2 cut(s) 47, 62
Hpy188I TCNGA 5 cut(s) 10, 52, 115, 136, 436
Hpy188III TCNNGA 3 cut(s) 200, 289, 371
HpyAV CCTTC 4 cut(s) 153, 218, 410, 450
HpyCH4V TGCA 6 cut(s) 164, 260, 268, 335, 341, 428
HpyF10VI GCNNNNNNNGC 2 cut(s) 329, 338
HpyF3I CTNAG 1 cut(s) 193
Hsp92II CATG 2 cut(s) 244, 451
Kzo9I GATC 2 cut(s) 179, 436
LmnI GCTCC 2 cut(s) 222, 451
LpnPI CCDG 3 cut(s) 135, 265, 384
Lsp1109I GCAGC 1 cut(s) 319
MaeI CTAG 1 cut(s) 348
MalI GATC 2 cut(s) 181, 438
MbiI CCGCTC 1 cut(s) 454
MboI GATC 2 cut(s) 179, 436
MboII GAAGA 3 cut(s) 102, 215, 374
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 1 cut(s) 179
MluCI AATT 3 cut(s) 187, 336, 429
MlyI GAGTC 1 cut(s) 56
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 3 cut(s) 47, 98, 169
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 2 cut(s) 57, 488
MslI CAYNNNNRTG 1 cut(s) 81
MunI CAATTG 1 cut(s) 336
MwoI GCNNNNNNNGC 2 cut(s) 329, 338
NdeII GATC 2 cut(s) 179, 436
NlaIII CATG 2 cut(s) 244, 451
PaqCI CACCTGC 1 cut(s) 130
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 1 cut(s) 47
PkrI GCNGC 2 cut(s) 334, 456
PleI GAGTC 1 cut(s) 56
PpsI GAGTC 1 cut(s) 56
PsuI RGATCY 1 cut(s) 179
RsaI GTAC 1 cut(s) 239
RsaNI GTAC 1 cut(s) 238
RseI CAYNNNNRTG 1 cut(s) 81
SaqAI TTAA 2 cut(s) 57, 488
SatI GCNGC 2 cut(s) 333, 455
Sau3AI GATC 2 cut(s) 179, 436
SchI GAGTC 1 cut(s) 56
SetI ASST 6 cut(s) 124, 145, 210, 334, 478, 504
SmiMI CAYNNNNRTG 1 cut(s) 81
Sse9I AATT 3 cut(s) 187, 336, 429
SsiI CCGC 1 cut(s) 454
SspMI CTAG 1 cut(s) 348
TaqI TCGA 1 cut(s) 96
TasI AATT 3 cut(s) 187, 336, 429
TatI WGTACW 1 cut(s) 237
TauI GCSGC 1 cut(s) 457
TfiI GAWTC 1 cut(s) 47
Tru1I TTAA 2 cut(s) 57, 488
Tru9I TTAA 2 cut(s) 57, 488
TscAI CASTG 1 cut(s) 325
TseI GCWGC 1 cut(s) 332
TspDTI ATGAA 3 cut(s) 384, 429, 436
TspRI CASTG 1 cut(s) 325
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 1 cut(s) 348
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.