Rw6G020280

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0011634
Physical Location & Seq
Reverse (-)
40558453 .. 40559552
1100 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G020280.1

Sequence Viewer

Length: 1005 bp
ATGGGTTCTGAAAATGCTACATACTTTACCGATCTCCTCAACACAGATTCAGAACTTAATGACTCTTTTTTTATCCACAACGATGGCCTCAATATCGATGGTTGCGTGTCTTCTGAAGCACCTGCTATGACATCTGAAATACCTTCTCAAAATAAACCCTCTGCAAAGAGCAAAAATAGATCTACGAATTACTTAGTTCAAGAAGACATTCTTCTGGTATCTGCATGGCTCAACATTGGCTTAGATCCAGTGAAAGGAAATGATCAAAAAAGTACTGCATATTGGGCTAGAATTGCAGAATACTATCACAAAAACAAGACTTTTGAAACTAACCGGGATGCTAGTTCTCTACAACACCGTTGGTCGGCAATTCAAGCGGCTGTTAATAAGTTTTGTGGATACTATGAACAGATTCTGAATCGACCACAAAGTGGTGAGACTGAACAAGACAAGGTAATCAAAGTGAATGACTTTTACACAGAAAAAGTTGCATTTTTGCAAGAACATAACTGGAATATCTTGAAGTATGAGCAAAAGTGGATATCGTTCAGTGCCAAGAAAGCTACAATTGCAACTACTAGAAAAAGGAAGTCTGTAAATCCTGAAGCGTCTCTTCAAAATGCTTCATCTCCAATAGTTTTAGATGAAGGCAATGGTGCAACTTCTGAACCTCCTTTCATGGAGCGGCCAATAGGACAAAAACAAGCTAAGGACTTGTTAAAGAAAGAAAAGGTAAAAGAGAATGTGGCTTCACAATTGGAACAATTCAGGGCATTCAAAAGAGAAACTGAACATAGGAAAGAAGAACGTTTCCAATTGAGTCTTTCTCAAGAAGAAAAGCTCTATATCCTCAAGGAAAAAAAGGAGCAAGCGAAACAACAACGAGAGGATGATAAAATAATGTTGATAGATATCACAACTCTGCCGGAAATGCAAGCTGAATATTTTAGAGACCGTCAGGCAGAAATCATGGCAAGAAGAGCCCGTCCAAGTGAAAGTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

334

Amino Acids

38.55

Weight (kDa)

6.58

Isoelectric Point (pI)

57.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 165 - 323 1.6e-16 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 130
Acc36I ACCTGC 1 cut(s) 130
AccB7I CCANNNNNTGG 1 cut(s) 431
AccBSI CCGCTC 1 cut(s) 685
AciI CCGC 2 cut(s) 377, 685
AclI AACGTT 1 cut(s) 808
AclWI GGATC 1 cut(s) 239
AcoI YGGCCR 1 cut(s) 686
AcuI CTGAAG 2 cut(s) 135, 624
AdeI CACNNNGTG 1 cut(s) 431
AfaI GTAC 1 cut(s) 274
AfiI CCNNNNNNNGG 3 cut(s) 254, 364, 431
AgsI TTSAA 6 cut(s) 200, 326, 374, 523, 617, 778
AluBI AGCT 4 cut(s) 563, 707, 841, 938
AluI AGCT 4 cut(s) 563, 707, 841, 938
Alw26I GTCTC 3 cut(s) 431, 615, 945
AlwI GGATC 1 cut(s) 239
AlwNI CAGNNNCTG 1 cut(s) 415
AoxI GGCC 2 cut(s) 85, 686
Asp700I GAANNNNTTC 2 cut(s) 207, 411
AsuC2I CCSGG 1 cut(s) 335
AsuHPI GGTGA 1 cut(s) 446
BanII GRGCYC 1 cut(s) 985
BbsI GAAGAC 2 cut(s) 102, 210
BccI CCATC 2 cut(s) 77, 92
BciVI GTATCC 1 cut(s) 392
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 1 cut(s) 335
BcoDI GTCTC 3 cut(s) 431, 615, 945
BfaI CTAG 3 cut(s) 288, 342, 579
BfuAI ACCTGC 1 cut(s) 130
BfuI GTATCC 1 cut(s) 392
BglII AGATCT 1 cut(s) 179
BisI GCNGC 2 cut(s) 378, 686
BlsI GCNGC 2 cut(s) 379, 687
BmcAI AGTACT 1 cut(s) 274
Bme1390I CCNGG 1 cut(s) 335
BmrFI CCNGG 1 cut(s) 335
BmsI GCATC 1 cut(s) 328
BpiI GAAGAC 2 cut(s) 102, 210
BplI GAGNNNNNCTC 2 cut(s) 811, 843
Bpu10I CCTNAGC 1 cut(s) 708
BpuEI CTTGAG 2 cut(s) 813, 836
BpuMI CCSGG 1 cut(s) 335
Bsa29I ATCGAT 1 cut(s) 96
BsaBI GATNNNNATC 1 cut(s) 911
BsaI GGTCTC 1 cut(s) 945
Bsc4I CCNNNNNNNGG 3 cut(s) 254, 364, 431
Bse1I ACTGG 2 cut(s) 248, 515
Bse3DI GCAATG 1 cut(s) 658
Bse8I GATNNNNATC 1 cut(s) 911
BseCI ATCGAT 1 cut(s) 96
BseGI GGATG 2 cut(s) 343, 895
BseJI GATNNNNATC 1 cut(s) 911
BseLI CCNNNNNNNGG 3 cut(s) 254, 364, 431
BseMI GCAATG 1 cut(s) 658
BseNI ACTGG 2 cut(s) 248, 515
BseRI GAGGAG 1 cut(s) 26
BshFI GGCC 2 cut(s) 87, 688
BshVI ATCGAT 1 cut(s) 96
BsiSI CCGG 2 cut(s) 334, 926
BslI CCNNNNNNNGG 3 cut(s) 254, 364, 431
BsmAI GTCTC 3 cut(s) 431, 615, 945
BsmBI CGTCTC 1 cut(s) 615
BsmI GAATGC 1 cut(s) 773
BsnI GGCC 2 cut(s) 87, 688
Bso31I GGTCTC 1 cut(s) 945
Bsp1286I GDGCHC 1 cut(s) 985
Bsp143I GATC 4 cut(s) 31, 179, 244, 262
BspACI CCGC 2 cut(s) 377, 685
BspANI GGCC 2 cut(s) 87, 688
BspDI ATCGAT 1 cut(s) 96
BspMI ACCTGC 1 cut(s) 130
BspPI GGATC 1 cut(s) 239
BspQI GCTCTTC 1 cut(s) 973
BspTNI GGTCTC 1 cut(s) 945
BsrBI CCGCTC 1 cut(s) 685
BsrDI GCAATG 1 cut(s) 658
BsrI ACTGG 2 cut(s) 248, 515
BssMI GATC 4 cut(s) 31, 179, 244, 262
Bst4CI ACNGT 2 cut(s) 359, 956
Bst6I CTCTTC 2 cut(s) 618, 973
BstC8I GCNNGC 2 cut(s) 870, 936
BstDEI CTNAG 3 cut(s) 193, 241, 708
BstF5I GGATG 2 cut(s) 343, 895
BstKTI GATC 4 cut(s) 34, 182, 247, 265
BstMAI GTCTC 3 cut(s) 431, 615, 945
BstMBI GATC 4 cut(s) 31, 179, 244, 262
BstMWI GCNNNNNNNGC 7 cut(s) 284, 293, 374, 560, 569, 931, 980
BstSCI CCNGG 1 cut(s) 333
BstV2I GAAGAC 2 cut(s) 102, 210
BstX2I RGATCY 2 cut(s) 179, 244
BstXI CCANNNNNNTGG 1 cut(s) 83
BstYI RGATCY 2 cut(s) 179, 244
Bsu15I ATCGAT 1 cut(s) 96
BsuI GTATCC 1 cut(s) 392
BsuRI GGCC 2 cut(s) 87, 688
BsuTUI ATCGAT 1 cut(s) 96
BtsCI GGATG 2 cut(s) 343, 895
BtsIMutI CAGTG 2 cut(s) 255, 556
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 2 cut(s) 870, 936
CaiI CAGNNNCTG 1 cut(s) 415
ClaI ATCGAT 1 cut(s) 96
CseI GACGC 1 cut(s) 597
Csp6I GTAC 1 cut(s) 273
CviAII CATG 3 cut(s) 225, 679, 970
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 3 cut(s) 193, 241, 708
DpnI GATC 4 cut(s) 33, 181, 246, 264
DpnII GATC 4 cut(s) 31, 179, 244, 262
DraIII CACNNNGTG 1 cut(s) 431
EaeI YGGCCR 1 cut(s) 686
Eam1104I CTCTTC 2 cut(s) 618, 973
EarI CTCTTC 2 cut(s) 618, 973
Eco24I GRGCYC 1 cut(s) 985
Eco31I GGTCTC 1 cut(s) 945
Eco32I GATATC 2 cut(s) 543, 913
Eco57I CTGAAG 2 cut(s) 135, 624
EcoRV GATATC 2 cut(s) 543, 913
EcoT38I GRGCYC 1 cut(s) 985
Esp3I CGTCTC 1 cut(s) 615
FaeI CATG 3 cut(s) 228, 682, 973
FalI AAGNNNNNCTT 4 cut(s) 195, 227, 597, 629
FatI CATG 3 cut(s) 224, 678, 969
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 378, 686
FokI GGATG 2 cut(s) 350, 902
FriOI GRGCYC 1 cut(s) 985
Fsp4HI GCNGC 2 cut(s) 378, 686
FspBI CTAG 3 cut(s) 288, 342, 579
GluI GCNGC 2 cut(s) 378, 686
HaeIII GGCC 2 cut(s) 87, 688
HapII CCGG 2 cut(s) 334, 926
HgaI GACGC 1 cut(s) 597
Hin1II CATG 3 cut(s) 228, 682, 973
HinfI GANTC 5 cut(s) 47, 62, 412, 418, 820
HpaII CCGG 2 cut(s) 334, 926
HphI GGTGA 1 cut(s) 446
Hpy188I TCNGA 6 cut(s) 10, 52, 115, 136, 417, 667
Hpy188III TCNNGA 4 cut(s) 200, 520, 602, 830
HpyAV CCTTC 2 cut(s) 153, 641
HpyCH4III ACNGT 2 cut(s) 359, 956
HpyCH4IV ACGT 1 cut(s) 808
HpyCH4V TGCA 9 cut(s) 164, 224, 278, 296, 491, 499, 572, 659, 934
HpyF10VI GCNNNNNNNGC 7 cut(s) 284, 293, 374, 560, 569, 931, 980
HpyF3I CTNAG 3 cut(s) 193, 241, 708
HpySE526I ACGT 1 cut(s) 808
Hsp92II CATG 3 cut(s) 228, 682, 973
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 4 cut(s) 31, 179, 244, 262
LguI GCTCTTC 1 cut(s) 973
LmnI GCTCC 2 cut(s) 682, 865
LpnPI CCDG 9 cut(s) 135, 200, 261, 347, 496, 615, 754, 939, 944
LweI GCATC 1 cut(s) 328
MaeI CTAG 3 cut(s) 288, 342, 579
MaeII ACGT 1 cut(s) 808
MalI GATC 4 cut(s) 33, 181, 246, 264
MbiI CCGCTC 1 cut(s) 685
MboI GATC 4 cut(s) 31, 179, 244, 262
MboII GAAGA 7 cut(s) 102, 203, 215, 605, 815, 845, 990
MfeI CAATTG 3 cut(s) 567, 755, 815
MflI RGATCY 2 cut(s) 179, 244
MhlI GDGCHC 1 cut(s) 985
MluCI AATT 7 cut(s) 187, 291, 369, 567, 755, 764, 815
MlyI GAGTC 2 cut(s) 56, 829
MnlI CCTC 6 cut(s) 47, 98, 169, 681, 860, 880
MroXI GAANNNNTTC 2 cut(s) 207, 411
MseI TTAA 3 cut(s) 57, 384, 719
MslI CAYNNNNRTG 1 cut(s) 81
MspI CCGG 2 cut(s) 334, 926
MspR9I CCNGG 1 cut(s) 335
MunI CAATTG 3 cut(s) 567, 755, 815
Mva1269I GAATGC 1 cut(s) 773
MwoI GCNNNNNNNGC 7 cut(s) 284, 293, 374, 560, 569, 931, 980
NciI CCSGG 1 cut(s) 335
NdeII GATC 4 cut(s) 31, 179, 244, 262
NlaIII CATG 3 cut(s) 228, 682, 973
PaqCI CACCTGC 1 cut(s) 130
PciSI GCTCTTC 1 cut(s) 973
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PctI GAATGC 1 cut(s) 773
PdmI GAANNNNTTC 2 cut(s) 207, 411
PfeI GAWTC 3 cut(s) 47, 412, 418
PflMI CCANNNNNTGG 1 cut(s) 431
PkrI GCNGC 2 cut(s) 379, 687
PleI GAGTC 2 cut(s) 56, 828
PpsI GAGTC 2 cut(s) 56, 828
Psp1406I AACGTT 1 cut(s) 808
PstNI CAGNNNCTG 1 cut(s) 415
PsuI RGATCY 2 cut(s) 179, 244
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
RseI CAYNNNNRTG 1 cut(s) 81
SapI GCTCTTC 1 cut(s) 973
SaqAI TTAA 3 cut(s) 57, 384, 719
SatI GCNGC 2 cut(s) 378, 686
Sau3AI GATC 4 cut(s) 31, 179, 244, 262
ScaI AGTACT 1 cut(s) 274
SchI GAGTC 2 cut(s) 56, 829
ScrFI CCNGG 1 cut(s) 335
SduI GDGCHC 1 cut(s) 985
SfaNI GCATC 1 cut(s) 328
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 2 cut(s) 828, 851
SmoI CTYRAG 2 cut(s) 828, 851
Sse9I AATT 7 cut(s) 187, 291, 369, 567, 755, 764, 815
SsiI CCGC 2 cut(s) 377, 685
SspI AATATT 1 cut(s) 944
SspMI CTAG 3 cut(s) 288, 342, 579
StyD4I CCNGG 1 cut(s) 333
TaaI ACNGT 2 cut(s) 359, 956
TaiI ACGT 1 cut(s) 811
TaqI TCGA 2 cut(s) 96, 421
TasI AATT 7 cut(s) 187, 291, 369, 567, 755, 764, 815
TatI WGTACW 1 cut(s) 272
TauI GCSGC 2 cut(s) 380, 688
TfiI GAWTC 3 cut(s) 47, 412, 418
Tru1I TTAA 3 cut(s) 57, 384, 719
Tru9I TTAA 3 cut(s) 57, 384, 719
TscAI CASTG 2 cut(s) 255, 556
TspDTI ATGAA 4 cut(s) 420, 615, 660, 667
TspRI CASTG 2 cut(s) 255, 556
Van91I CCANNNNNTGG 1 cut(s) 431
XmnI GAANNNNTTC 2 cut(s) 207, 411
XspI CTAG 3 cut(s) 288, 342, 579
ZrmI AGTACT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.