Rh4CG257500

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0011634
Physical Location & Seq
Reverse (-)
51022878 .. 51025157
2280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG257500.1

Sequence Viewer

Length: 1011 bp
ATGGGTTCTGAAAATGCTACATACTTTACCGATCTCCTCAACACAAATTCAGAACTTAATGACTCTTTTTTTATCCACAACGATGGCCTCAATATCGATGGTTGCGTGTCTTCTGAAGCACCTGCTATGACATCTGAAATACCTTCTCAAAATAAACCCTCTGCAAAGAGCAAAAATAGATCTACGAATTACTCAGTTCAAGAAGACATTCTTCTGGTATCTGCATGGCTCAACATTGGCTTAGATCCAGTGAAAGGAAATGATCAAAAAAGTACTGCATATTGGGCTAGAATTGCAGAATACTATCATAAAAACAAGACTTTTGAAACTAACCGGGATGCTAGTTCTCTACAACACCGTTGGTCGGCAATTCAAGCGGCTGTTAATAAGTTTTGTGGATACTATGAACAGATTCTGAATCGACCACAAAGTGGTGAGACTGAACAAGACAAGCTCCAACGAGCGAAAAAGATGTACAGAGACAGAGAAAAAGTTGCATTTTTGCAAGAACATAACTGGAATATCTTGAAGTATGAGCAAAAGTGGATATCGTTCAGTGCCAAGAAAGCTACAATTGCAACTACTAGAAAAAGGAAGTCTGTAAATCCTGAAGCGTCTCTTCAAAATGCTTCATCTCCAATAGTTTTAGATGAAGGCAATGGTGCAACTTCTGAACCTCCTTCCGTGGAGCGGCCAATAGGACAAAAACAAGCTAAGGACTTGTTAAAGAAAGAAAAGGTAAAAGAGAATGTGGCTTCACAATCGGAACAATTCAGGGCATTCAAAAGAGAAACTGAACATAGGAAAGAAGAACGTTTCCAATTGAGTCTTTCTCAAGAAGAAAAGCTCTATATCCTCAAGGAAAAAAAGGAGCAAGCGAAACAACAACGAGAGGATGATAAAATAATGTTGATAGATATCACAACTCTGCCGGAAATGCAAGCTGAATATTTTAGAGAACGTCAGGCAGAAATCATGGCAAGAAGAGCCCGTCCAAGTGAAAGTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

336

Amino Acids

38.79

Weight (kDa)

8.75

Isoelectric Point (pI)

59.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 167 - 325 5.7e-17 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 130
Acc36I ACCTGC 1 cut(s) 130
AccB7I CCANNNNNTGG 1 cut(s) 431
AccBSI CCGCTC 1 cut(s) 691
AciI CCGC 2 cut(s) 377, 691
AclI AACGTT 1 cut(s) 814
AclWI GGATC 1 cut(s) 239
AcoI YGGCCR 1 cut(s) 692
AcsI RAATTY 1 cut(s) 46
AcuI CTGAAG 2 cut(s) 135, 630
AdeI CACNNNGTG 1 cut(s) 431
AfaI GTAC 2 cut(s) 274, 476
AfiI CCNNNNNNNGG 4 cut(s) 254, 364, 431, 690
AgsI TTSAA 6 cut(s) 200, 326, 374, 529, 623, 784
AluBI AGCT 5 cut(s) 454, 569, 713, 847, 944
AluI AGCT 5 cut(s) 454, 569, 713, 847, 944
Alw26I GTCTC 3 cut(s) 431, 474, 621
AlwI GGATC 1 cut(s) 239
AlwNI CAGNNNCTG 1 cut(s) 415
AoxI GGCC 2 cut(s) 85, 692
ApoI RAATTY 1 cut(s) 46
Asp700I GAANNNNTTC 2 cut(s) 207, 411
AsuC2I CCSGG 1 cut(s) 335
AsuHPI GGTGA 1 cut(s) 446
BanII GRGCYC 1 cut(s) 991
BbsI GAAGAC 2 cut(s) 102, 210
BccI CCATC 2 cut(s) 77, 92
BciVI GTATCC 1 cut(s) 392
BclI TGATCA 1 cut(s) 262
BcnI CCSGG 1 cut(s) 335
BcoDI GTCTC 3 cut(s) 431, 474, 621
BfaI CTAG 3 cut(s) 288, 342, 585
BfuAI ACCTGC 1 cut(s) 130
BfuI GTATCC 1 cut(s) 392
BglII AGATCT 1 cut(s) 179
BisI GCNGC 2 cut(s) 378, 692
BlsI GCNGC 2 cut(s) 379, 693
BmcAI AGTACT 1 cut(s) 274
Bme1390I CCNGG 1 cut(s) 335
BmrFI CCNGG 1 cut(s) 335
BmsI GCATC 1 cut(s) 328
BpiI GAAGAC 2 cut(s) 102, 210
BplI GAGNNNNNCTC 2 cut(s) 817, 849
Bpu10I CCTNAGC 1 cut(s) 714
BpuEI CTTGAG 2 cut(s) 819, 842
BpuMI CCSGG 1 cut(s) 335
Bsa29I ATCGAT 1 cut(s) 96
BsaBI GATNNNNATC 1 cut(s) 917
BsaJI CCNNGG 1 cut(s) 684
Bsc4I CCNNNNNNNGG 4 cut(s) 254, 364, 431, 690
Bse1I ACTGG 2 cut(s) 248, 521
Bse3DI GCAATG 1 cut(s) 664
Bse8I GATNNNNATC 1 cut(s) 917
BseCI ATCGAT 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 684
BseGI GGATG 2 cut(s) 343, 901
BseJI GATNNNNATC 1 cut(s) 917
BseLI CCNNNNNNNGG 4 cut(s) 254, 364, 431, 690
BseMI GCAATG 1 cut(s) 664
BseMII CTCAG 1 cut(s) 207
BseNI ACTGG 2 cut(s) 248, 521
BseRI GAGGAG 1 cut(s) 26
BshFI GGCC 2 cut(s) 87, 694
BshVI ATCGAT 1 cut(s) 96
BsiSI CCGG 2 cut(s) 334, 932
BslI CCNNNNNNNGG 4 cut(s) 254, 364, 431, 690
BsmAI GTCTC 3 cut(s) 431, 474, 621
BsmBI CGTCTC 1 cut(s) 621
BsmI GAATGC 1 cut(s) 779
BsnI GGCC 2 cut(s) 87, 694
Bsp1286I GDGCHC 1 cut(s) 991
Bsp1407I TGTACA 1 cut(s) 474
Bsp143I GATC 4 cut(s) 31, 179, 244, 262
BspACI CCGC 2 cut(s) 377, 691
BspANI GGCC 2 cut(s) 87, 694
BspCNI CTCAG 1 cut(s) 206
BspDI ATCGAT 1 cut(s) 96
BspMI ACCTGC 1 cut(s) 130
BspPI GGATC 1 cut(s) 239
BspQI GCTCTTC 1 cut(s) 979
BsrBI CCGCTC 1 cut(s) 691
BsrDI GCAATG 1 cut(s) 664
BsrGI TGTACA 1 cut(s) 474
BsrI ACTGG 2 cut(s) 248, 521
BssECI CCNNGG 1 cut(s) 684
BssMI GATC 4 cut(s) 31, 179, 244, 262
Bst4CI ACNGT 1 cut(s) 359
Bst6I CTCTTC 2 cut(s) 624, 979
BstAUI TGTACA 1 cut(s) 474
BstC8I GCNNGC 2 cut(s) 876, 942
BstDEI CTNAG 3 cut(s) 193, 241, 714
BstDSI CCRYGG 1 cut(s) 684
BstF5I GGATG 2 cut(s) 343, 901
BstKTI GATC 4 cut(s) 34, 182, 247, 265
BstMAI GTCTC 3 cut(s) 431, 474, 621
BstMBI GATC 4 cut(s) 31, 179, 244, 262
BstMWI GCNNNNNNNGC 7 cut(s) 284, 293, 374, 566, 575, 937, 986
BstSCI CCNGG 1 cut(s) 333
BstV2I GAAGAC 2 cut(s) 102, 210
BstX2I RGATCY 2 cut(s) 179, 244
BstXI CCANNNNNNTGG 1 cut(s) 83
BstYI RGATCY 2 cut(s) 179, 244
Bsu15I ATCGAT 1 cut(s) 96
BsuI GTATCC 1 cut(s) 392
BsuRI GGCC 2 cut(s) 87, 694
BsuTUI ATCGAT 1 cut(s) 96
BtgI CCRYGG 1 cut(s) 684
BtsCI GGATG 2 cut(s) 343, 901
BtsIMutI CAGTG 2 cut(s) 255, 562
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 2 cut(s) 876, 942
CaiI CAGNNNCTG 1 cut(s) 415
ClaI ATCGAT 1 cut(s) 96
CseI GACGC 1 cut(s) 603
Csp6I GTAC 2 cut(s) 273, 475
CviAII CATG 2 cut(s) 225, 976
CviQI GTAC 2 cut(s) 273, 475
DdeI CTNAG 3 cut(s) 193, 241, 714
DpnI GATC 4 cut(s) 33, 181, 246, 264
DpnII GATC 4 cut(s) 31, 179, 244, 262
DraIII CACNNNGTG 1 cut(s) 431
EaeI YGGCCR 1 cut(s) 692
Eam1104I CTCTTC 2 cut(s) 624, 979
EarI CTCTTC 2 cut(s) 624, 979
Eco24I GRGCYC 1 cut(s) 991
Eco32I GATATC 2 cut(s) 549, 919
Eco57I CTGAAG 2 cut(s) 135, 630
EcoRV GATATC 2 cut(s) 549, 919
EcoT38I GRGCYC 1 cut(s) 991
Esp3I CGTCTC 1 cut(s) 621
FaeI CATG 2 cut(s) 228, 979
FalI AAGNNNNNCTT 4 cut(s) 195, 227, 603, 635
FatI CATG 2 cut(s) 224, 975
FbaI TGATCA 1 cut(s) 262
Fnu4HI GCNGC 2 cut(s) 378, 692
FokI GGATG 2 cut(s) 350, 908
FriOI GRGCYC 1 cut(s) 991
Fsp4HI GCNGC 2 cut(s) 378, 692
FspBI CTAG 3 cut(s) 288, 342, 585
GluI GCNGC 2 cut(s) 378, 692
HaeIII GGCC 2 cut(s) 87, 694
HapII CCGG 2 cut(s) 334, 932
HgaI GACGC 1 cut(s) 603
Hin1II CATG 2 cut(s) 228, 979
HinfI GANTC 4 cut(s) 62, 412, 418, 826
HpaII CCGG 2 cut(s) 334, 932
HphI GGTGA 1 cut(s) 446
Hpy188I TCNGA 7 cut(s) 10, 52, 115, 136, 417, 673, 766
Hpy188III TCNNGA 4 cut(s) 200, 526, 608, 836
HpyAV CCTTC 3 cut(s) 153, 647, 690
HpyCH4III ACNGT 1 cut(s) 359
HpyCH4IV ACGT 2 cut(s) 814, 961
HpyCH4V TGCA 9 cut(s) 164, 224, 278, 296, 497, 505, 578, 665, 940
HpyF10VI GCNNNNNNNGC 7 cut(s) 284, 293, 374, 566, 575, 937, 986
HpyF3I CTNAG 3 cut(s) 193, 241, 714
HpySE526I ACGT 2 cut(s) 814, 961
Hsp92II CATG 2 cut(s) 228, 979
Ksp22I TGATCA 1 cut(s) 262
Kzo9I GATC 4 cut(s) 31, 179, 244, 262
LguI GCTCTTC 1 cut(s) 979
LmnI GCTCC 3 cut(s) 459, 688, 871
LpnPI CCDG 9 cut(s) 135, 200, 261, 347, 502, 621, 760, 945, 950
LweI GCATC 1 cut(s) 328
MaeI CTAG 3 cut(s) 288, 342, 585
MaeII ACGT 2 cut(s) 814, 961
MalI GATC 4 cut(s) 33, 181, 246, 264
MbiI CCGCTC 1 cut(s) 691
MboI GATC 4 cut(s) 31, 179, 244, 262
MboII GAAGA 7 cut(s) 102, 203, 215, 611, 821, 851, 996
MfeI CAATTG 2 cut(s) 573, 821
MflI RGATCY 2 cut(s) 179, 244
MhlI GDGCHC 1 cut(s) 991
MluCI AATT 7 cut(s) 46, 187, 291, 369, 573, 770, 821
MlyI GAGTC 2 cut(s) 56, 835
MmeI TCCRAC 1 cut(s) 481
MnlI CCTC 6 cut(s) 47, 98, 169, 687, 866, 886
MroXI GAANNNNTTC 2 cut(s) 207, 411
MseI TTAA 3 cut(s) 57, 384, 725
MslI CAYNNNNRTG 1 cut(s) 81
MspI CCGG 2 cut(s) 334, 932
MspR9I CCNGG 1 cut(s) 335
MunI CAATTG 2 cut(s) 573, 821
Mva1269I GAATGC 1 cut(s) 779
MwoI GCNNNNNNNGC 7 cut(s) 284, 293, 374, 566, 575, 937, 986
NciI CCSGG 1 cut(s) 335
NdeII GATC 4 cut(s) 31, 179, 244, 262
NlaIII CATG 2 cut(s) 228, 979
PaqCI CACCTGC 1 cut(s) 130
PciSI GCTCTTC 1 cut(s) 979
PcsI WCGNNNNNNNCGW 1 cut(s) 102
PctI GAATGC 1 cut(s) 779
PdmI GAANNNNTTC 2 cut(s) 207, 411
PfeI GAWTC 2 cut(s) 412, 418
PflMI CCANNNNNTGG 1 cut(s) 431
PkrI GCNGC 2 cut(s) 379, 693
PleI GAGTC 2 cut(s) 56, 834
PpsI GAGTC 2 cut(s) 56, 834
Psp1406I AACGTT 1 cut(s) 814
PstNI CAGNNNCTG 1 cut(s) 415
PsuI RGATCY 2 cut(s) 179, 244
RsaI GTAC 2 cut(s) 274, 476
RsaNI GTAC 2 cut(s) 273, 475
RseI CAYNNNNRTG 1 cut(s) 81
SapI GCTCTTC 1 cut(s) 979
SaqAI TTAA 3 cut(s) 57, 384, 725
SatI GCNGC 2 cut(s) 378, 692
Sau3AI GATC 4 cut(s) 31, 179, 244, 262
ScaI AGTACT 1 cut(s) 274
SchI GAGTC 2 cut(s) 56, 835
ScrFI CCNGG 1 cut(s) 335
SduI GDGCHC 1 cut(s) 991
SfaNI GCATC 1 cut(s) 328
SmiMI CAYNNNNRTG 1 cut(s) 81
SmlI CTYRAG 2 cut(s) 834, 857
SmoI CTYRAG 2 cut(s) 834, 857
Sse9I AATT 7 cut(s) 46, 187, 291, 369, 573, 770, 821
SsiI CCGC 2 cut(s) 377, 691
SspI AATATT 1 cut(s) 950
SspMI CTAG 3 cut(s) 288, 342, 585
StyD4I CCNGG 1 cut(s) 333
TaaI ACNGT 1 cut(s) 359
TaiI ACGT 2 cut(s) 817, 964
TaqI TCGA 2 cut(s) 96, 421
TasI AATT 7 cut(s) 46, 187, 291, 369, 573, 770, 821
TatI WGTACW 2 cut(s) 272, 474
TauI GCSGC 2 cut(s) 380, 694
TfiI GAWTC 2 cut(s) 412, 418
Tru1I TTAA 3 cut(s) 57, 384, 725
Tru9I TTAA 3 cut(s) 57, 384, 725
TscAI CASTG 2 cut(s) 255, 562
TspDTI ATGAA 3 cut(s) 420, 621, 666
TspGWI ACGGA 1 cut(s) 673
TspRI CASTG 2 cut(s) 255, 562
Van91I CCANNNNNTGG 1 cut(s) 431
XapI RAATTY 1 cut(s) 46
XmnI GAANNNNTTC 2 cut(s) 207, 411
XspI CTAG 3 cut(s) 288, 342, 585
ZrmI AGTACT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.