Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0011634

Physical Location & Seq

Genomic Coordinates Reverse (-)

3669763 .. 3673848

Gene Structure 4086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0047500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1998 bp

ATGTCCACAACTCCGGCGCCCTCCTCGCCGCCGACCAACACCACCTCCCCACCACCCGCCGCACCGGCGCCCACAACCCCAAGCGCTCCTCCGCCAACAACCCCAAGCGCTCCTCCGCCAACAACTCCCGCCACTCCACCGCCCACAACACCCGCGACTCCACCGCCGACGACCCCCAGCGCGCCGCCGCCCAAGACTCCGGCATCCCCACCGCCGCCGTCAGGTACCCCACCTTCACCCCCAGCGCCCTCCACCCCAGCTCCGACATCTCCGGGGTCCTCGCCGCCGCCGCCGTCCACCCCAACCGTTACATCGCCGCCTCCCCCCAAAACGCCGACCACGACCAAGAGCCCTCCGCCGCCTAAGTCGCCGTCGACAACACCGTCACCGTCATCGGGATTGGATACTGGGGTTATAGTCGGAATTGCTATTGGGGCTGTGGCGATTCTAGTGGTGCTCAGTCTTTGCTGCATTTTTTGCTCCAAGAAGAAGAGGAGAAGAAGAGAGGAGCCTGCCTATTATGTGCCTCCGCCGCCGCCTCCAACCGGCCCTAAAGGCGAAATTTACTACGGTCCACCACGCCCTCATCAAAATACTCCTCCTCCACCTGCAGATCATCATGTAATCACAATGCCTAAGCCACCTCCTGCACAAGCTGTAGCATCCAGGCCACCGCACTCGCCAGGATATACACCGCCACCGCAGCCATACAGCAGTGGAGGTTCTGGTTCCAATTATTCAGGGTCTGAAACTCCACTCCCACCACCTCCACCACCGGGGTATTCCTTGGGATTCTCTAAAAGCACGTTTACTTATGAGGAACTGGCTTTGGCAACAGAAGGGTTCTCGGATTCCAATCTCCTTGGACAGGGTGGGTTTGGATATGTTCACAAAGGAGTTCTTCCCAATGGGAAGGAAGTAGCGGTCAAGCAGCTGAAGGCTGGAAGCGGGCAAGGGGAACGTGAATTCCAGGCAGAAGTTGAAATTATTAGCCGTGTACATCACAGACATCTGGTTTCGCTGGTTGGATACTGTATGACTGGATCTGAGAGACTACTTGTCTATGAATTTGTTCCAAATAACACTATGGAGTTCCACTTACATGGAAAAGGGAGACCTACCATGGATTGGTCCACAAGACTGAAAATCGCTTTAGGATCTGCAAAAGGACTGGCATATCTTCATGAGGATTGTCATCCTAAAATCATTCATCGTGATATCAAAGCAGCTAATATACTTTTGGATTTCAAGTTTGAGTGCAAGGTTGCAGACTTTGGTCTTGCCAAGCTTTCTTCTGATCTTAATACTCATGTTTCCACCCGAGTGATGGGGACTTTTGGGTATCTAGCTCCAGAATATGCTTCTAGTGGAAAACTCACAGACAAGTCAGATGTTTTCTCGTTTGGGGTTATGCTTTTGGAGTTGATTACTGGACGCCGCCCAGTTGACGCATCTCATACGTACATAGAGGACAGTTTGGTAGAGTGGGCAAGGCCCGTTCTGACTCGAGCTTTGGAATCAGATGACTTTGATGAACTGGTTGATCCTAGACTGCAGAATAGTTTTGACCACAATGAGATGGCTCGCATGGTTGCTTGTGCTGCAGCTTGTGTACGACATTCTGCAAGGCGACGACCACGAATGAGTCAGGTTGTCCGTGCTTTAGAGGGAGATGTGTCTCTTTCTGATCTGAACGAAGGAATCAGGCCTGGGCATAGCAGTGTCTACAGTTCCCATGGAAGCTCAGACTATGACTCAAGGCCTTATGACACAAAGCAACGCAATCTGGATATGATAAACCACAGGAAGATGGCATTGGAAAGCCAGGAGTACGGCGCTAGTAGCGAGTACAGTGGTGGTCGCACCACCAGCGAGTATGGTTTGAACCCATCTGGTTCAAGCAGTGAAGGCCAACGAACCCGGGAAACCACCAGAGAAATGGAGCTGGGAAAGATGAATAAGAACAATCGAGGTTACAGTGGAAGCTCCGAGTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

665

Amino Acids

70.91

Weight (kDa)

8.44

Isoelectric Point (pI)

65.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	284 - 488	3.3e-42	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	286 - 555	8.3e-47	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011634)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31921
rosa_laevigata	RLG00000001662 RLG00000029965 RLG00000031902 RLG00000032919
rosa_multiflora	Rmu_sc0002545.1_g000001 Rmu_sc0002720.1_g000018 Rmu_sc0004092.1_g000030
rosa_roxburghii	Rroxscaffold_1G00010410
rosa_rugosa	Rorug02G0047500 Rorug03G0276600
rosa_samantha	Rh3DG253500 Rh4AG050300 Rh4BG394100 Rh4CG257500 Rh4CG409000 Rh6CG047300 Rh6DG042800
rosa_wichuraiana	Rw6G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	616
AasI	GACNNNNNNGTC	1 cut(s)	382
Acc36I	ACCTGC	1 cut(s)	616
Acc65I	GGTACC	1 cut(s)	224
AccB1I	GGYRCC	3 cut(s)	16, 67, 224
AccB7I	CCANNNNNTGG	1 cut(s)	1128
AccI	GTMKAC	2 cut(s)	374, 1725
AccII	CGCG	2 cut(s)	155, 182
AclWI	GGATC	3 cut(s)	1051, 1165, 1538
AcsI	RAATTY	3 cut(s)	561, 965, 1067
AcuI	CTGAAG	1 cut(s)	956
AcyI	GRCGYC	3 cut(s)	17, 68, 1435
AfaI	GTAC	6 cut(s)	226, 999, 1463, 1614, 1832, 1850
AfeI	AGCGCT	2 cut(s)	85, 109
AfiI	CCNNNNNNNGG	7 cut(s)	221, 395, 545, 776, 868, 1128, 1327
AgsI	TTSAA	4 cut(s)	983, 1249, 1885, 1899
AhdI	GACNNNNNGTC	1 cut(s)	1058
AjnI	CCWGG	5 cut(s)	665, 682, 969, 1708, 1824
AjuI	GAANNNNNNNTTGG	2 cut(s)	1799, 1831
AleI	CACNNNNGTG	1 cut(s)	1322
AloI	GAACNNNNNNTCC	2 cut(s)	951, 983
Alw21I	GWGCWC	1 cut(s)	459
Alw26I	GTCTC	3 cut(s)	1045, 1108, 1683
AlwI	GGATC	3 cut(s)	1051, 1165, 1538
AlwNI	CAGNNNCTG	1 cut(s)	746
Ama87I	CYCGRG	3 cut(s)	1320, 1506, 1920
Aor51HI	AGCGCT	2 cut(s)	85, 109
AoxI	GGCC	6 cut(s)	547, 668, 1493, 1706, 1760, 1909
ApeKI	GCWGC	6 cut(s)	468, 703, 931, 1226, 1601, 1604
ApoI	RAATTY	3 cut(s)	561, 965, 1067
ArsI	GACNNNNNNTTYG	2 cut(s)	1495, 1527
Asp700I	GAANNNNTTC	1 cut(s)	1071
Asp718I	GGTACC	1 cut(s)	224
AspLEI	GCGC	8 cut(s)	19, 70, 86, 110, 182, 184, 247, 1838
AspS9I	GGNCC	5 cut(s)	276, 548, 572, 1131, 1494
AsuC2I	CCSGG	4 cut(s)	273, 777, 1921, 1922
AsuHPI	GGTGA	2 cut(s)	228, 378
AvaI	CYCGRG	3 cut(s)	1320, 1506, 1920
AvaII	GGWCC	3 cut(s)	276, 572, 1131
BaeI	ACNNNNGTAYC	2 cut(s)	396, 429
BanI	GGYRCC	3 cut(s)	16, 67, 224
BanII	GRGCYC	1 cut(s)	353
BarI	GAAGNNNNNNTAC	2 cut(s)	217, 249
Bbv12I	GWGCWC	1 cut(s)	459
BbvI	GCAGC	6 cut(s)	455, 715, 943, 1238, 1588, 1616
BccI	CCATC	4 cut(s)	1321, 1573, 1804, 1897
BceAI	ACGGC	5 cut(s)	202, 277, 355, 978, 1849
BciT130I	CCWGG	5 cut(s)	667, 684, 971, 1710, 1826
BciVI	GTATCC	2 cut(s)	397, 1022
BcnI	CCSGG	4 cut(s)	273, 777, 1921, 1922
BcoDI	GTCTC	3 cut(s)	1045, 1108, 1683
BfaI	CTAG	5 cut(s)	449, 1346, 1365, 1548, 1839
BfmI	CTRYAG	5 cut(s)	609, 657, 1553, 1602, 1726
BfoI	RGCGCY	6 cut(s)	20, 71, 87, 111, 248, 1839
BfuAI	ACCTGC	1 cut(s)	616
BfuI	GTATCC	2 cut(s)	397, 1022
BglI	GCCNNNNNGGC	2 cut(s)	65, 555
Bme1390I	CCNGG	9 cut(s)	273, 667, 684, 777, 971, 1710, 1826, 1921, 1922
Bme18I	GGWCC	3 cut(s)	276, 572, 1131
BmeRI	GACNNNNNGTC	1 cut(s)	1058
BmeT110I	CYCGRG	3 cut(s)	1320, 1506, 1920
BmgT120I	GGNCC	5 cut(s)	276, 548, 572, 1131, 1494
BmiI	GGNNCC	6 cut(s)	18, 69, 226, 277, 510, 730
BmrFI	CCNGG	9 cut(s)	273, 667, 684, 777, 971, 1710, 1826, 1921, 1922
BmrI	ACTGGG	2 cut(s)	417, 1436
BmsI	GCATC	3 cut(s)	212, 671, 1460
BmuI	ACTGGG	2 cut(s)	417, 1436
BoxI	GACNNNNGTC	1 cut(s)	1275
BpmI	CTGGAG	1 cut(s)	1335
Bpu10I	CCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	1 cut(s)	1741
BpuMI	CCSGG	4 cut(s)	273, 777, 1921, 1922
BsaAI	YACGTR	1 cut(s)	1461
BsaBI	GATNNNNATC	2 cut(s)	855, 1194
BsaHI	GRCGYC	3 cut(s)	17, 68, 1435
BsaI	GGTCTC	1 cut(s)	1108
BsaJI	CCNNGG	8 cut(s)	272, 776, 786, 862, 1122, 1709, 1735, 1920
BsaXI	ACNNNNNCTCC	6 cut(s)	29, 59, 244, 274, 586, 616
Bsc4I	CCNNNNNNNGG	7 cut(s)	221, 395, 545, 776, 868, 1128, 1327
Bse118I	RCCGGY	2 cut(s)	64, 545
Bse1I	ACTGG	7 cut(s)	412, 828, 1045, 1176, 1435, 1442, 1542
Bse8I	GATNNNNATC	2 cut(s)	855, 1194
BseBI	CCWGG	5 cut(s)	667, 684, 971, 1710, 1826
BseDI	CCNNGG	8 cut(s)	272, 776, 786, 862, 1122, 1709, 1735, 1920
BseGI	GGATG	3 cut(s)	203, 662, 1195
BseJI	GATNNNNATC	2 cut(s)	855, 1194
BseLI	CCNNNNNNNGG	7 cut(s)	221, 395, 545, 776, 868, 1128, 1327
BseMII	CTCAG	3 cut(s)	472, 1038, 1758
BseNI	ACTGG	7 cut(s)	412, 828, 1045, 1176, 1435, 1442, 1542
BsePI	GCGCGC	1 cut(s)	180
BseRI	GAGGAG	7 cut(s)	13, 78, 102, 508, 521, 588, 591
BseXI	GCAGC	6 cut(s)	455, 715, 943, 1238, 1588, 1616
BseYI	CCCAGC	4 cut(s)	176, 241, 256, 1945
BsgI	GTGCAG	1 cut(s)	633
Bsh1236I	CGCG	2 cut(s)	155, 182
BshFI	GGCC	6 cut(s)	549, 670, 1495, 1708, 1762, 1911
BshNI	GGYRCC	3 cut(s)	16, 67, 224
BsiHKAI	GWGCWC	1 cut(s)	459
BsiHKCI	CYCGRG	3 cut(s)	1320, 1506, 1920
BsiSI	CCGG	7 cut(s)	14, 65, 200, 272, 546, 776, 1921
BslFI	GGGAC	1 cut(s)	1345
BslI	CCNNNNNNNGG	7 cut(s)	221, 395, 545, 776, 868, 1128, 1327
BsmAI	GTCTC	3 cut(s)	1045, 1108, 1683
BsmFI	GGGAC	1 cut(s)	1345
BsnI	GGCC	6 cut(s)	549, 670, 1495, 1708, 1762, 1911
Bso31I	GGTCTC	1 cut(s)	1108
BsoBI	CYCGRG	3 cut(s)	1320, 1506, 1920
Bsp1286I	GDGCHC	2 cut(s)	353, 459
Bsp1407I	TGTACA	1 cut(s)	997
Bsp143I	GATC	6 cut(s)	613, 1043, 1157, 1297, 1543, 1687
Bsp19I	CCATGG	2 cut(s)	1122, 1735
BspANI	GGCC	6 cut(s)	549, 670, 1495, 1708, 1762, 1911
BspCNI	CTCAG	3 cut(s)	471, 1039, 1757
BspFNI	CGCG	2 cut(s)	155, 182
BspHI	TCATGA	1 cut(s)	1183
BspLI	GGNNCC	6 cut(s)	18, 69, 226, 277, 510, 730
BspMAI	CTGCAG	3 cut(s)	613, 1557, 1606
BspMI	ACCTGC	1 cut(s)	616
BspPI	GGATC	3 cut(s)	1051, 1165, 1538
BspT107I	GGYRCC	3 cut(s)	16, 67, 224
BspTNI	GGTCTC	1 cut(s)	1108
BsrFI	RCCGGY	2 cut(s)	64, 545
BsrGI	TGTACA	1 cut(s)	997
BsrI	ACTGG	7 cut(s)	412, 828, 1045, 1176, 1435, 1442, 1542
BssAI	RCCGGY	2 cut(s)	64, 545
BssECI	CCNNGG	8 cut(s)	272, 776, 786, 862, 1122, 1709, 1735, 1920
BssHII	GCGCGC	1 cut(s)	180
BssMI	GATC	6 cut(s)	613, 1043, 1157, 1297, 1543, 1687
BssNI	GRCGYC	3 cut(s)	17, 68, 1435
BssT1I	CCWWGG	4 cut(s)	786, 862, 1122, 1735
Bst2UI	CCWGG	5 cut(s)	667, 684, 971, 1710, 1826
Bst4CI	ACNGT	9 cut(s)	307, 384, 390, 572, 1034, 1475, 1730, 1853, 1979
Bst6I	CTCTTC	2 cut(s)	485, 496
BstACI	GRCGYC	3 cut(s)	17, 68, 1435
BstAPI	GCANNNNNTGC	1 cut(s)	477
BstAUI	TGTACA	1 cut(s)	997
BstBAI	YACGTR	1 cut(s)	1461
BstC8I	GCNNGC	4 cut(s)	182, 513, 950, 1585
BstDEI	CTNAG	5 cut(s)	363, 458, 636, 1047, 1744
BstDSI	CCRYGG	2 cut(s)	1122, 1735
BstENI	CCTNNNNNAGG	1 cut(s)	866
BstF5I	GGATG	3 cut(s)	203, 662, 1195
BstFNI	CGCG	2 cut(s)	155, 182
BstH2I	RGCGCY	6 cut(s)	20, 71, 87, 111, 248, 1839
BstHHI	GCGC	8 cut(s)	19, 70, 86, 110, 182, 184, 247, 1838
BstKTI	GATC	6 cut(s)	616, 1046, 1160, 1300, 1546, 1690
BstMAI	GTCTC	3 cut(s)	1045, 1108, 1683
BstMBI	GATC	6 cut(s)	613, 1043, 1157, 1297, 1543, 1687
BstNI	CCWGG	5 cut(s)	667, 684, 971, 1710, 1826
BstPAI	GACNNNNGTC	1 cut(s)	1275
BstSCI	CCNGG	9 cut(s)	271, 665, 682, 775, 969, 1708, 1824, 1919, 1920
BstSFI	CTRYAG	5 cut(s)	609, 657, 1553, 1602, 1726
BstSNI	TACGTA	1 cut(s)	1461
BstUI	CGCG	2 cut(s)	155, 182
BstV1I	GCAGC	6 cut(s)	455, 715, 943, 1238, 1588, 1616
BstX2I	RGATCY	2 cut(s)	1043, 1157
BstXI	CCANNNNNNTGG	2 cut(s)	1103, 1939
BstYI	RGATCY	2 cut(s)	1043, 1157
BsuI	GTATCC	2 cut(s)	397, 1022
BsuRI	GGCC	6 cut(s)	549, 670, 1495, 1708, 1762, 1911
BtgI	CCRYGG	2 cut(s)	1122, 1735
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	3 cut(s)	203, 662, 1195
BtsI	GCAGTG	3 cut(s)	721, 1726, 1909
BtsIMutI	CAGTG	5 cut(s)	721, 1726, 1858, 1909, 1984
BveI	ACCTGC	1 cut(s)	616
Cac8I	GCNNGC	4 cut(s)	182, 513, 950, 1585
CaiI	CAGNNNCTG	1 cut(s)	746
CciI	TCATGA	1 cut(s)	1183
CfoI	GCGC	8 cut(s)	19, 70, 86, 110, 182, 184, 247, 1838
Cfr10I	RCCGGY	2 cut(s)	64, 545
Cfr13I	GGNCC	5 cut(s)	276, 548, 572, 1131, 1494
Cfr9I	CCCGGG	1 cut(s)	1920
CseI	GACGC	2 cut(s)	1443, 1457
Csp6I	GTAC	6 cut(s)	225, 998, 1462, 1613, 1831, 1849
CviAII	CATG	7 cut(s)	620, 1103, 1123, 1184, 1310, 1588, 1736
CviQI	GTAC	6 cut(s)	225, 998, 1462, 1613, 1831, 1849
DdeI	CTNAG	5 cut(s)	363, 458, 636, 1047, 1744
DinI	GGCGCC	2 cut(s)	18, 69
DpnI	GATC	6 cut(s)	615, 1045, 1159, 1299, 1545, 1689
DpnII	GATC	6 cut(s)	613, 1043, 1157, 1297, 1543, 1687
DrdI	GACNNNNNNGTC	1 cut(s)	382
DriI	GACNNNNNGTC	1 cut(s)	1058
DseDI	GACNNNNNNGTC	1 cut(s)	382
Eam1104I	CTCTTC	2 cut(s)	485, 496
Eam1105I	GACNNNNNGTC	1 cut(s)	1058
EarI	CTCTTC	2 cut(s)	485, 496
EciI	GGCGGA	4 cut(s)	81, 105, 345, 519
Eco105I	TACGTA	1 cut(s)	1461
Eco130I	CCWWGG	4 cut(s)	786, 862, 1122, 1735
Eco147I	AGGCCT	2 cut(s)	1708, 1762
Eco24I	GRGCYC	1 cut(s)	353
Eco31I	GGTCTC	1 cut(s)	1108
Eco32I	GATATC	1 cut(s)	1219
Eco47I	GGWCC	3 cut(s)	276, 572, 1131
Eco47III	AGCGCT	2 cut(s)	85, 109
Eco57I	CTGAAG	1 cut(s)	956
Eco88I	CYCGRG	3 cut(s)	1320, 1506, 1920
EcoNI	CCTNNNNNAGG	1 cut(s)	866
EcoO109I	RGGNCCY	1 cut(s)	276
EcoRI	GAATTC	1 cut(s)	965
EcoRII	CCWGG	5 cut(s)	665, 682, 969, 1708, 1824
EcoRV	GATATC	1 cut(s)	1219
EcoT14I	CCWWGG	4 cut(s)	786, 862, 1122, 1735
EcoT38I	GRGCYC	1 cut(s)	353
EgeI	GGCGCC	2 cut(s)	18, 69
EheI	GGCGCC	2 cut(s)	18, 69
ErhI	CCWWGG	4 cut(s)	786, 862, 1122, 1735
FaeI	CATG	7 cut(s)	623, 1106, 1126, 1187, 1313, 1591, 1739
FalI	AAGNNNNNCTT	2 cut(s)	885, 917
FaqI	GGGAC	1 cut(s)	1345
FatI	CATG	7 cut(s)	619, 1102, 1122, 1183, 1309, 1587, 1735
FauI	CCCGC	4 cut(s)	64, 136, 160, 941
FblI	GTMKAC	2 cut(s)	374, 1725
FokI	GGATG	3 cut(s)	190, 649, 1182
FriOI	GRGCYC	1 cut(s)	353
FspBI	CTAG	5 cut(s)	449, 1346, 1365, 1548, 1839
GlaI	GCGC	8 cut(s)	18, 69, 85, 109, 181, 183, 246, 1837
GsaI	CCCAGC	4 cut(s)	180, 245, 260, 1949
GsuI	CTGGAG	1 cut(s)	1335
HaeII	RGCGCY	6 cut(s)	20, 71, 87, 111, 248, 1839
HaeIII	GGCC	6 cut(s)	549, 670, 1495, 1708, 1762, 1911
HapII	CCGG	7 cut(s)	14, 65, 200, 272, 546, 776, 1921
HgaI	GACGC	2 cut(s)	1443, 1457
HhaI	GCGC	8 cut(s)	19, 70, 86, 110, 182, 184, 247, 1838
Hin1I	GRCGYC	3 cut(s)	17, 68, 1435
Hin1II	CATG	7 cut(s)	623, 1106, 1126, 1187, 1313, 1591, 1739
Hin6I	GCGC	8 cut(s)	17, 68, 84, 108, 180, 182, 245, 1836
HinP1I	GCGC	8 cut(s)	17, 68, 84, 108, 180, 182, 245, 1836
HincII	GTYRAC	2 cut(s)	375, 1447
HindII	GTYRAC	2 cut(s)	375, 1447
HindIII	AAGCTT	1 cut(s)	1286
HpaII	CCGG	7 cut(s)	14, 65, 200, 272, 546, 776, 1921
HphI	GGTGA	2 cut(s)	228, 378
Hpy188III	TCNNGA	5 cut(s)	396, 1184, 1214, 1352, 1787
Hpy99I	CGWCG	3 cut(s)	172, 376, 1635
HpyAV	CCTTC	6 cut(s)	243, 833, 907, 931, 1691, 1901
HpyCH4III	ACNGT	9 cut(s)	307, 384, 390, 572, 1034, 1475, 1730, 1853, 1979
HpyCH4IV	ACGT	3 cut(s)	806, 961, 1460
HpyCH4V	TGCA	9 cut(s)	471, 611, 650, 1163, 1260, 1268, 1555, 1604, 1625
HpyF3I	CTNAG	5 cut(s)	363, 458, 636, 1047, 1744
HpySE526I	ACGT	3 cut(s)	806, 961, 1460
Hsp92I	GRCGYC	3 cut(s)	17, 68, 1435
Hsp92II	CATG	7 cut(s)	623, 1106, 1126, 1187, 1313, 1591, 1739
HspAI	GCGC	8 cut(s)	17, 68, 84, 108, 180, 182, 245, 1836
KasI	GGCGCC	2 cut(s)	16, 67
KpnI	GGTACC	1 cut(s)	228
Kzo9I	GATC	6 cut(s)	613, 1043, 1157, 1297, 1543, 1687
LmnI	GCTCC	8 cut(s)	91, 115, 265, 485, 508, 1354, 1942, 1991
Lsp1109I	GCAGC	6 cut(s)	455, 715, 943, 1238, 1588, 1616
LweI	GCATC	3 cut(s)	212, 671, 1460
MaeI	CTAG	5 cut(s)	449, 1346, 1365, 1548, 1839
MaeII	ACGT	3 cut(s)	806, 961, 1460
MaeIII	GTNAC	3 cut(s)	307, 384, 1973
MalI	GATC	6 cut(s)	615, 1045, 1159, 1299, 1545, 1689
MboI	GATC	6 cut(s)	613, 1043, 1157, 1297, 1543, 1687
MboII	GAAGA	8 cut(s)	499, 502, 510, 513, 893, 1172, 1284, 1819
MflI	RGATCY	2 cut(s)	1043, 1157
MhlI	GDGCHC	2 cut(s)	353, 459
MluCI	AATT	6 cut(s)	423, 561, 733, 965, 984, 1067
Mly113I	GGCGCC	2 cut(s)	17, 68
MlyI	GAGTC	5 cut(s)	151, 190, 1498, 1654, 1748
MmeI	TCCRAC	4 cut(s)	287, 400, 566, 1006
MroXI	GAANNNNTTC	1 cut(s)	1071
MseI	TTAA	2 cut(s)	1302, 1996
MslI	CAYNNNNRTG	3 cut(s)	1101, 1322, 1719
MspA1I	CMGCKG	1 cut(s)	934
MspI	CCGG	7 cut(s)	14, 65, 200, 272, 546, 776, 1921
MspR9I	CCNGG	9 cut(s)	273, 667, 684, 777, 971, 1710, 1826, 1921, 1922
MvaI	CCWGG	5 cut(s)	667, 684, 971, 1710, 1826
MvnI	CGCG	2 cut(s)	155, 182
NarI	GGCGCC	2 cut(s)	17, 68
NciI	CCSGG	4 cut(s)	273, 777, 1921, 1922
NcoI	CCATGG	2 cut(s)	1122, 1735
NdeII	GATC	6 cut(s)	613, 1043, 1157, 1297, 1543, 1687
NlaIII	CATG	7 cut(s)	623, 1106, 1126, 1187, 1313, 1591, 1739
NlaIV	GGNNCC	6 cut(s)	18, 69, 226, 277, 510, 730
NmuCI	GTSAC	1 cut(s)	384
OliI	CACNNNNGTG	1 cut(s)	1322
PaeR7I	CTCGAG	1 cut(s)	1506
PagI	TCATGA	1 cut(s)	1183
PaqCI	CACCTGC	1 cut(s)	616
PauI	GCGCGC	1 cut(s)	180
PceI	AGGCCT	2 cut(s)	1708, 1762
PcsI	WCGNNNNNNNCGW	2 cut(s)	338, 380
PdmI	GAANNNNTTC	1 cut(s)	1071
PfeI	GAWTC	5 cut(s)	445, 792, 851, 1517, 1701
PflMI	CCANNNNNTGG	1 cut(s)	1128
PleI	GAGTC	5 cut(s)	151, 190, 1498, 1653, 1748
PluTI	GGCGCC	2 cut(s)	20, 71
PpsI	GAGTC	5 cut(s)	151, 190, 1498, 1653, 1748
Ppu21I	YACGTR	1 cut(s)	1461
PpuMI	RGGWCCY	1 cut(s)	276
PshAI	GACNNNNGTC	1 cut(s)	1275
Psp5II	RGGWCCY	1 cut(s)	276
Psp6I	CCWGG	5 cut(s)	665, 682, 969, 1708, 1824
PspFI	CCCAGC	4 cut(s)	176, 241, 256, 1945
PspGI	CCWGG	5 cut(s)	665, 682, 969, 1708, 1824
PspN4I	GGNNCC	6 cut(s)	18, 69, 226, 277, 510, 730
PspPI	GGNCC	5 cut(s)	276, 548, 572, 1131, 1494
PspPPI	RGGWCCY	1 cut(s)	276
PspXI	VCTCGAGB	1 cut(s)	1506
PstI	CTGCAG	3 cut(s)	613, 1557, 1606
PstNI	CAGNNNCTG	1 cut(s)	746
PsuI	RGATCY	2 cut(s)	1043, 1157
PteI	GCGCGC	1 cut(s)	180
PvuII	CAGCTG	1 cut(s)	934
RsaI	GTAC	6 cut(s)	226, 999, 1463, 1614, 1832, 1850
RsaNI	GTAC	6 cut(s)	225, 998, 1462, 1613, 1831, 1849
RseI	CAYNNNNRTG	3 cut(s)	1101, 1322, 1719
SalI	GTCGAC	1 cut(s)	373
SaqAI	TTAA	2 cut(s)	1302, 1996
Sau3AI	GATC	6 cut(s)	613, 1043, 1157, 1297, 1543, 1687
Sau96I	GGNCC	5 cut(s)	276, 548, 572, 1131, 1494
SchI	GAGTC	5 cut(s)	151, 190, 1498, 1654, 1748
ScrFI	CCNGG	9 cut(s)	273, 667, 684, 777, 971, 1710, 1826, 1921, 1922
SduI	GDGCHC	2 cut(s)	353, 459
SfaNI	GCATC	3 cut(s)	212, 671, 1460
SfcI	CTRYAG	5 cut(s)	609, 657, 1553, 1602, 1726
SfoI	GGCGCC	2 cut(s)	18, 69
Sfr274I	CTCGAG	1 cut(s)	1506
SgrAI	CRCCGGYG	1 cut(s)	64
SinI	GGWCC	3 cut(s)	276, 572, 1131
SlaI	CTCGAG	1 cut(s)	1506
SmaI	CCCGGG	1 cut(s)	1922
SmiMI	CAYNNNNRTG	3 cut(s)	1101, 1322, 1719
SmlI	CTYRAG	2 cut(s)	1506, 1756
SmoI	CTYRAG	2 cut(s)	1506, 1756
SnaBI	TACGTA	1 cut(s)	1461
Sse9I	AATT	6 cut(s)	423, 561, 733, 965, 984, 1067
SseBI	AGGCCT	2 cut(s)	1708, 1762
SspDI	GGCGCC	2 cut(s)	16, 67
SspMI	CTAG	5 cut(s)	449, 1346, 1365, 1548, 1839
StuI	AGGCCT	2 cut(s)	1708, 1762
StyD4I	CCNGG	9 cut(s)	271, 665, 682, 775, 969, 1708, 1824, 1919, 1920
StyI	CCWWGG	4 cut(s)	786, 862, 1122, 1735
TaaI	ACNGT	9 cut(s)	307, 384, 390, 572, 1034, 1475, 1730, 1853, 1979
TaiI	ACGT	3 cut(s)	809, 964, 1463
TaqI	TCGA	3 cut(s)	374, 1507, 1969
TasI	AATT	6 cut(s)	423, 561, 733, 965, 984, 1067
TatI	WGTACW	2 cut(s)	997, 1848
TfiI	GAWTC	5 cut(s)	445, 792, 851, 1517, 1701
Tru1I	TTAA	2 cut(s)	1302, 1996
Tru9I	TTAA	2 cut(s)	1302, 1996
TscAI	CASTG	5 cut(s)	721, 1726, 1858, 1909, 1984
TseFI	GTSAC	1 cut(s)	384
TseI	GCWGC	6 cut(s)	468, 703, 931, 1226, 1601, 1604
Tsp45I	GTSAC	1 cut(s)	384
TspDTI	ATGAA	5 cut(s)	1080, 1172, 1199, 1548, 1970
TspGWI	ACGGA	1 cut(s)	1646
TspMI	CCCGGG	1 cut(s)	1920
TspRI	CASTG	5 cut(s)	721, 1726, 1858, 1909, 1984
Van91I	CCANNNNNTGG	1 cut(s)	1128
VpaK11BI	GGWCC	3 cut(s)	276, 572, 1131
XagI	CCTNNNNNAGG	1 cut(s)	866
XapI	RAATTY	3 cut(s)	561, 965, 1067
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1324, 1936
XhoI	CTCGAG	1 cut(s)	1506
XmaI	CCCGGG	1 cut(s)	1920
XmiI	GTMKAC	2 cut(s)	374, 1725
XmnI	GAANNNNTTC	1 cut(s)	1071
XspI	CTAG	5 cut(s)	449, 1346, 1365, 1548, 1839

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.