Rh4BG394100

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0011634
Physical Location & Seq
Forward (+)
54564125 .. 54566339
2215 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG394100.1

Sequence Viewer

Length: 1221 bp
ATGACTTCACGTAAAATCTCCAACGTTCCAATTTTTCAGTTTCAACGTTCCAATTTCTGGGTTCTTGAGTTCTCTGTTCCTCTATTTAAGTTTTGGCGTTGTACTGTACACACTTTAACTTGTGGAGCAACAACTATCATTATATTTTTTCGACGGCCATTTGAACAATCAAGGAAATCTGCCGTTGGATCCCAGTTCTTCATGGACCAGATGGGTTCTGAAAATGTTACATATTTTACCGATCTCCTTAACACACCATCATCAGGACTTGATGACTCTTTTTTGATCCACAATGATGGGTTCAATACTGGTGTGTTGCCTTCTCAAGCACCTACTATGGCATCTGAAATACCTGCTCAAAATGAACCTTCTGCAAAGAGTAGACACAGGTCTACGAATTACTCAGTTCAAGAGGATGTGCTTCTTGTATCTGCATGGCTCAATGTTGGCTTAGATCCAGTGAAAGGAAATGATCAAAAAAGTTGCCAATATTGGGCTAGAATTGCAGAACAATATCATAAAAACAAGACTTTTGAAACCAACCGGGATGCTAGTTCTCTACAACATCGTTGGTCTGCAATTCAGGCAGCAGTTAATAAGTTTTGTGGATACTATGAACAGATTCTGAATCGACCACAAAGTGGTGAGACTGAACAGGACAAGCTCCAACGAGCGAAAAAGATGTACAGAGACAAAGAAAAAGTTGCATTTCTGCAAGAACATAACTGGAATATCTTGAAGTATGCGCAAAAGTGGATATCGTTTAGTGCCAAGAAAGCTGCAATTGCAACTACTAGAAAAAGGAAGCCTGTAAATCTTGAAGGGTCTCTTCAAAATGCGTCATCTCCAATAGTTTTAGATGAAGGCAATGGTGCAACTTCTGAACCTTCTTTCATGGAGCGGCCAATAGGCCAAAAACAAGCTAAGGACTTGTTAAAGAAAGACAAGGTAAAAGAGAATTTGGCTTCACAATTGGAACAATTCAGGGCATTCAAAAGAGAAACTGAGTGTAGGAAAGAAGAGCGTTTTCAATTGAGTCTTTCTCAAGAACAAAAGCTCTATATCCTCAAGGAAAAAAAGGAGCAAGCGAAACAACAACGTGAGGATGATAAAATAATGTTGATAGATATCACTACTCTACCGGAAATGCAAGCTGAATATTTTAGAGACCGTCAGGCAGAAATCATAGCAAGAAGAGCCCGTCTAAGTGAAAGTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

406

Amino Acids

47.02

Weight (kDa)

9.32

Isoelectric Point (pI)

53.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 237 - 395 2e-16 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 747
Acc36I ACCTGC 1 cut(s) 361
AccB7I CCANNNNNTGG 2 cut(s) 57, 641
AccBSI CCGCTC 1 cut(s) 901
AccI GTMKAC 2 cut(s) 382, 392
AciI CCGC 1 cut(s) 901
AclI AACGTT 2 cut(s) 24, 46
AclWI GGATC 4 cut(s) 183, 196, 280, 449
AcoI YGGCCR 2 cut(s) 155, 902
AcsI RAATTY 1 cut(s) 958
AdeI CACNNNGTG 1 cut(s) 641
AfaI GTAC 3 cut(s) 103, 108, 686
AfiI CCNNNNNNNGG 5 cut(s) 57, 263, 464, 493, 641
AluBI AGCT 5 cut(s) 664, 779, 923, 1057, 1154
AluI AGCT 5 cut(s) 664, 779, 923, 1057, 1154
Alw26I GTCTC 4 cut(s) 641, 684, 831, 1161
AlwI GGATC 4 cut(s) 183, 196, 280, 449
AlwNI CAGNNNCTG 1 cut(s) 625
AoxI GGCC 3 cut(s) 155, 902, 910
ApeKI GCWGC 2 cut(s) 587, 779
ApoI RAATTY 1 cut(s) 958
Asp700I GAANNNNTTC 1 cut(s) 621
AspLEI GCGC 1 cut(s) 748
AspS9I GGNCC 1 cut(s) 205
AsuC2I CCSGG 1 cut(s) 545
AsuHPI GGTGA 1 cut(s) 656
AvaII GGWCC 1 cut(s) 205
BamHI GGATCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 1201
BbvI GCAGC 2 cut(s) 599, 766
BccI CCATC 3 cut(s) 205, 265, 290
BceAI ACGGC 2 cut(s) 167, 170
BciVI GTATCC 1 cut(s) 602
BclI TGATCA 1 cut(s) 472
BcnI CCSGG 1 cut(s) 545
BcoDI GTCTC 4 cut(s) 641, 684, 831, 1161
BfaI CTAG 3 cut(s) 498, 552, 795
BfuAI ACCTGC 1 cut(s) 361
BfuI GTATCC 1 cut(s) 602
BisI GCNGC 3 cut(s) 588, 780, 902
BlsI GCNGC 3 cut(s) 589, 781, 903
Bme1390I CCNGG 1 cut(s) 545
Bme18I GGWCC 1 cut(s) 205
BmgT120I GGNCC 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 545
BmrI ACTGGG 1 cut(s) 187
BmsI GCATC 2 cut(s) 350, 538
BmuI ACTGGG 1 cut(s) 187
BoxI GACNNNNGTC 1 cut(s) 388
BplI GAGNNNNNCTC 2 cut(s) 1027, 1059
Bpu10I CCTNAGC 1 cut(s) 924
BpuEI CTTGAG 4 cut(s) 86, 309, 1029, 1052
BpuMI CCSGG 1 cut(s) 545
BsaAI YACGTR 1 cut(s) 11
BsaBI GATNNNNATC 1 cut(s) 1127
BsaI GGTCTC 2 cut(s) 831, 1161
BsaWI WCCGGW 1 cut(s) 1141
Bsc4I CCNNNNNNNGG 5 cut(s) 57, 263, 464, 493, 641
Bse1I ACTGG 4 cut(s) 193, 313, 458, 731
Bse3DI GCAATG 1 cut(s) 874
Bse8I GATNNNNATC 1 cut(s) 1127
BseGI GGATG 3 cut(s) 421, 553, 1111
BseJI GATNNNNATC 1 cut(s) 1127
BseLI CCNNNNNNNGG 5 cut(s) 57, 263, 464, 493, 641
BseMI GCAATG 1 cut(s) 874
BseMII CTCAG 2 cut(s) 417, 996
BseNI ACTGG 4 cut(s) 193, 313, 458, 731
BseXI GCAGC 2 cut(s) 599, 766
BshFI GGCC 3 cut(s) 157, 904, 912
BsiSI CCGG 2 cut(s) 544, 1142
BslI CCNNNNNNNGG 5 cut(s) 57, 263, 464, 493, 641
BsmAI GTCTC 4 cut(s) 641, 684, 831, 1161
BsmI GAATGC 1 cut(s) 989
BsnI GGCC 3 cut(s) 157, 904, 912
Bso31I GGTCTC 2 cut(s) 831, 1161
Bsp1286I GDGCHC 1 cut(s) 1201
Bsp1407I TGTACA 2 cut(s) 106, 684
Bsp143I GATC 5 cut(s) 188, 241, 285, 454, 472
BspACI CCGC 1 cut(s) 901
BspANI GGCC 3 cut(s) 157, 904, 912
BspCNI CTCAG 2 cut(s) 416, 997
BspLI GGNNCC 1 cut(s) 190
BspMI ACCTGC 1 cut(s) 361
BspPI GGATC 4 cut(s) 183, 196, 280, 449
BspQI GCTCTTC 2 cut(s) 1014, 1189
BspTNI GGTCTC 2 cut(s) 831, 1161
BsrBI CCGCTC 1 cut(s) 901
BsrDI GCAATG 1 cut(s) 874
BsrGI TGTACA 2 cut(s) 106, 684
BsrI ACTGG 4 cut(s) 193, 313, 458, 731
BssMI GATC 5 cut(s) 188, 241, 285, 454, 472
Bst4CI ACNGT 2 cut(s) 106, 1172
Bst6I CTCTTC 3 cut(s) 834, 1014, 1189
BstAUI TGTACA 2 cut(s) 106, 684
BstBAI YACGTR 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 1086, 1152
BstDEI CTNAG 5 cut(s) 403, 451, 924, 1005, 1205
BstF5I GGATG 3 cut(s) 421, 553, 1111
BstHHI GCGC 1 cut(s) 748
BstKTI GATC 5 cut(s) 191, 244, 288, 457, 475
BstMAI GTCTC 4 cut(s) 641, 684, 831, 1161
BstMBI GATC 5 cut(s) 188, 241, 285, 454, 472
BstMWI GCNNNNNNNGC 5 cut(s) 503, 584, 776, 785, 1196
BstPAI GACNNNNGTC 1 cut(s) 388
BstSCI CCNGG 1 cut(s) 543
BstV1I GCAGC 2 cut(s) 599, 766
BstX2I RGATCY 2 cut(s) 188, 454
BstXI CCANNNNNNTGG 1 cut(s) 296
BstYI RGATCY 2 cut(s) 188, 454
BsuI GTATCC 1 cut(s) 602
BsuRI GGCC 3 cut(s) 157, 904, 912
BtsCI GGATG 3 cut(s) 421, 553, 1111
BtsIMutI CAGTG 1 cut(s) 465
BveI ACCTGC 1 cut(s) 361
Cac8I GCNNGC 2 cut(s) 1086, 1152
CaiI CAGNNNCTG 1 cut(s) 625
CfoI GCGC 1 cut(s) 748
Cfr13I GGNCC 1 cut(s) 205
CseI GACGC 1 cut(s) 828
Csp6I GTAC 3 cut(s) 102, 107, 685
CviAII CATG 3 cut(s) 202, 435, 895
CviQI GTAC 3 cut(s) 102, 107, 685
DdeI CTNAG 5 cut(s) 403, 451, 924, 1005, 1205
DpnI GATC 5 cut(s) 190, 243, 287, 456, 474
DpnII GATC 5 cut(s) 188, 241, 285, 454, 472
DraIII CACNNNGTG 1 cut(s) 641
EaeI YGGCCR 2 cut(s) 155, 902
Eam1104I CTCTTC 3 cut(s) 834, 1014, 1189
EarI CTCTTC 3 cut(s) 834, 1014, 1189
Eco24I GRGCYC 1 cut(s) 1201
Eco31I GGTCTC 2 cut(s) 831, 1161
Eco32I GATATC 2 cut(s) 759, 1129
Eco47I GGWCC 1 cut(s) 205
EcoRV GATATC 2 cut(s) 759, 1129
EcoT38I GRGCYC 1 cut(s) 1201
FaeI CATG 3 cut(s) 205, 438, 898
FalI AAGNNNNNCTT 2 cut(s) 813, 845
FatI CATG 3 cut(s) 201, 434, 894
FbaI TGATCA 1 cut(s) 472
FblI GTMKAC 2 cut(s) 382, 392
Fnu4HI GCNGC 3 cut(s) 588, 780, 902
FokI GGATG 3 cut(s) 428, 560, 1118
FriOI GRGCYC 1 cut(s) 1201
Fsp4HI GCNGC 3 cut(s) 588, 780, 902
FspBI CTAG 3 cut(s) 498, 552, 795
FspI TGCGCA 1 cut(s) 747
GlaI GCGC 1 cut(s) 747
GluI GCNGC 3 cut(s) 588, 780, 902
HaeIII GGCC 3 cut(s) 157, 904, 912
HapII CCGG 2 cut(s) 544, 1142
HgaI GACGC 1 cut(s) 828
HhaI GCGC 1 cut(s) 748
Hin1II CATG 3 cut(s) 205, 438, 898
Hin6I GCGC 1 cut(s) 746
HinP1I GCGC 1 cut(s) 746
HinfI GANTC 4 cut(s) 275, 622, 628, 1036
HpaII CCGG 2 cut(s) 544, 1142
HphI GGTGA 1 cut(s) 656
Hpy166II GTNNAC 3 cut(s) 109, 383, 393
Hpy188I TCNGA 4 cut(s) 220, 346, 627, 883
Hpy188III TCNNGA 6 cut(s) 65, 264, 410, 736, 818, 1046
Hpy8I GTNNAC 3 cut(s) 109, 383, 393
Hpy99I CGWCG 1 cut(s) 156
HpyAV CCTTC 5 cut(s) 330, 378, 815, 857, 897
HpyCH4III ACNGT 2 cut(s) 106, 1172
HpyCH4IV ACGT 4 cut(s) 10, 24, 46, 1099
HpyF10VI GCNNNNNNNGC 5 cut(s) 503, 584, 776, 785, 1196
HpyF3I CTNAG 5 cut(s) 403, 451, 924, 1005, 1205
HpySE526I ACGT 4 cut(s) 10, 24, 46, 1099
Hsp92II CATG 3 cut(s) 205, 438, 898
HspAI GCGC 1 cut(s) 746
Ksp22I TGATCA 1 cut(s) 472
Kzo9I GATC 5 cut(s) 188, 241, 285, 454, 472
LguI GCTCTTC 2 cut(s) 1014, 1189
LmnI GCTCC 4 cut(s) 125, 669, 898, 1081
Lsp1109I GCAGC 2 cut(s) 599, 766
LweI GCATC 2 cut(s) 350, 538
MaeI CTAG 3 cut(s) 498, 552, 795
MaeII ACGT 4 cut(s) 10, 24, 46, 1099
MaeIII GTNAC 1 cut(s) 226
MalI GATC 5 cut(s) 190, 243, 287, 456, 474
MbiI CCGCTC 1 cut(s) 901
MboI GATC 5 cut(s) 188, 241, 285, 454, 472
MboII GAAGA 4 cut(s) 190, 821, 1031, 1206
MfeI CAATTG 3 cut(s) 783, 971, 1031
MflI RGATCY 2 cut(s) 188, 454
MhlI GDGCHC 1 cut(s) 1201
MlyI GAGTC 2 cut(s) 269, 1045
MmeI TCCRAC 3 cut(s) 45, 166, 691
MnlI CCTC 4 cut(s) 90, 406, 1076, 1096
MroXI GAANNNNTTC 1 cut(s) 621
MseI TTAA 5 cut(s) 87, 116, 249, 594, 935
MslI CAYNNNNRTG 1 cut(s) 294
MspI CCGG 2 cut(s) 544, 1142
MspR9I CCNGG 1 cut(s) 545
MunI CAATTG 3 cut(s) 783, 971, 1031
Mva1269I GAATGC 1 cut(s) 989
MwoI GCNNNNNNNGC 5 cut(s) 503, 584, 776, 785, 1196
NciI CCSGG 1 cut(s) 545
NdeII GATC 5 cut(s) 188, 241, 285, 454, 472
NlaIII CATG 3 cut(s) 205, 438, 898
NlaIV GGNNCC 1 cut(s) 190
NsbI TGCGCA 1 cut(s) 747
PciSI GCTCTTC 2 cut(s) 1014, 1189
PctI GAATGC 1 cut(s) 989
PdmI GAANNNNTTC 1 cut(s) 621
PfeI GAWTC 2 cut(s) 622, 628
PflMI CCANNNNNTGG 2 cut(s) 57, 641
PkrI GCNGC 3 cut(s) 589, 781, 903
PleI GAGTC 2 cut(s) 269, 1044
PpsI GAGTC 2 cut(s) 269, 1044
Ppu21I YACGTR 1 cut(s) 11
PshAI GACNNNNGTC 1 cut(s) 388
Psp1406I AACGTT 2 cut(s) 24, 46
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 205
PstNI CAGNNNCTG 1 cut(s) 625
PsuI RGATCY 2 cut(s) 188, 454
RsaI GTAC 3 cut(s) 103, 108, 686
RsaNI GTAC 3 cut(s) 102, 107, 685
RseI CAYNNNNRTG 1 cut(s) 294
SapI GCTCTTC 2 cut(s) 1014, 1189
SaqAI TTAA 5 cut(s) 87, 116, 249, 594, 935
SatI GCNGC 3 cut(s) 588, 780, 902
Sau3AI GATC 5 cut(s) 188, 241, 285, 454, 472
Sau96I GGNCC 1 cut(s) 205
SchI GAGTC 2 cut(s) 269, 1045
ScrFI CCNGG 1 cut(s) 545
SduI GDGCHC 1 cut(s) 1201
SfaNI GCATC 2 cut(s) 350, 538
SinI GGWCC 1 cut(s) 205
SmiMI CAYNNNNRTG 1 cut(s) 294
SmlI CTYRAG 4 cut(s) 65, 324, 1044, 1067
SmoI CTYRAG 4 cut(s) 65, 324, 1044, 1067
SsiI CCGC 1 cut(s) 901
SspI AATATT 2 cut(s) 491, 1160
SspMI CTAG 3 cut(s) 498, 552, 795
StyD4I CCNGG 1 cut(s) 543
TaaI ACNGT 2 cut(s) 106, 1172
TaiI ACGT 4 cut(s) 13, 27, 49, 1102
TaqI TCGA 2 cut(s) 151, 631
TatI WGTACW 3 cut(s) 101, 106, 684
TauI GCSGC 1 cut(s) 904
TfiI GAWTC 2 cut(s) 622, 628
Tru1I TTAA 5 cut(s) 87, 116, 249, 594, 935
Tru9I TTAA 5 cut(s) 87, 116, 249, 594, 935
TscAI CASTG 1 cut(s) 465
TseI GCWGC 2 cut(s) 587, 779
TspDTI ATGAA 5 cut(s) 190, 378, 630, 876, 883
TspRI CASTG 1 cut(s) 465
Van91I CCANNNNNTGG 2 cut(s) 57, 641
VpaK11BI GGWCC 1 cut(s) 205
XapI RAATTY 1 cut(s) 958
XmiI GTMKAC 2 cut(s) 382, 392
XmnI GAANNNNTTC 1 cut(s) 621
XspI CTAG 3 cut(s) 498, 552, 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.