Rh6CG047300

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0011634
Physical Location & Seq
Reverse (-)
4675538 .. 4677844
2307 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG047300.1

Sequence Viewer

Length: 480 bp
ATGTACAGAGACAGAGAAAAAGTTGCATTTTTGCAAGAACATAACTGGAATATCTTGAAGTATGAACAAAAGTGGATATCGTTCAGTGCCAAGAAAGCTGCAATTGCAACTACTAGAAAAAGGAACTCTATAAATCCTGAAGCGTCTCTTCAAAATGCTTCATCTCCAATAGTTTTAGATGAAGGCAATGGTGCAACTTCTGAACCTTCTTTCATGGAGCGGCCAATAGGACAAAAACAAGCTAAGGACTTGTTAAAGAAAGAAAAGGTAAAAGAGAATGTGGCTTCACAATTGGAACAATTCAGGGCATTCAAAAGAGAAACTGAGCGTAGGAAAGAAGAGCGTTTCCAATTGAGTCTTTCTCAAGAAGAAAAGCTCAATATCCTCAAGGAAAAAAAGAAGCAAGCGAAACAACAACGAGAGGATGATAAAATAATGTTGATATATAGGTATCACTACTCTGTCGGAAATGCAAGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

159

Amino Acids

18.74

Weight (kDa)

9.72

Isoelectric Point (pI)

52.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 10 - 146 1.9e-12 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 220
AciI CCGC 1 cut(s) 220
AcoI YGGCCR 1 cut(s) 221
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 1 cut(s) 5
AgsI TTSAA 3 cut(s) 58, 152, 313
AluBI AGCT 4 cut(s) 98, 242, 376, 477
AluI AGCT 4 cut(s) 98, 242, 376, 477
Alw26I GTCTC 2 cut(s) 3, 150
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 1 cut(s) 98
BbvI GCAGC 1 cut(s) 85
BcoDI GTCTC 2 cut(s) 3, 150
BfaI CTAG 1 cut(s) 114
BisI GCNGC 2 cut(s) 99, 221
BlsI GCNGC 2 cut(s) 100, 222
BplI GAGNNNNNCTC 2 cut(s) 346, 378
Bpu10I CCTNAGC 1 cut(s) 243
BpuEI CTTGAG 2 cut(s) 348, 371
Bse1I ACTGG 1 cut(s) 50
Bse3DI GCAATG 1 cut(s) 193
BseGI GGATG 1 cut(s) 430
BseMI GCAATG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 315
BseNI ACTGG 1 cut(s) 50
BseXI GCAGC 1 cut(s) 85
BshFI GGCC 1 cut(s) 223
BsmAI GTCTC 2 cut(s) 3, 150
BsmBI CGTCTC 1 cut(s) 150
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 1 cut(s) 223
Bsp1407I TGTACA 1 cut(s) 3
BspACI CCGC 1 cut(s) 220
BspANI GGCC 1 cut(s) 223
BspCNI CTCAG 1 cut(s) 316
BspQI GCTCTTC 1 cut(s) 333
BsrBI CCGCTC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 193
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 50
Bst6I CTCTTC 2 cut(s) 153, 333
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 405, 475
BstDEI CTNAG 2 cut(s) 243, 324
BstF5I GGATG 1 cut(s) 430
BstMAI GTCTC 2 cut(s) 3, 150
BstMWI GCNNNNNNNGC 2 cut(s) 95, 104
BstV1I GCAGC 1 cut(s) 85
BsuRI GGCC 1 cut(s) 223
BtsCI GGATG 1 cut(s) 430
BtsIMutI CAGTG 1 cut(s) 91
Cac8I GCNNGC 2 cut(s) 405, 475
CseI GACGC 1 cut(s) 132
Csp6I GTAC 1 cut(s) 4
CviAII CATG 1 cut(s) 214
CviJI RGCY 6 cut(s) 98, 223, 242, 284, 376, 477
CviKI_1 RGCY 6 cut(s) 98, 223, 242, 284, 376, 477
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 243, 324
EaeI YGGCCR 1 cut(s) 221
Eam1104I CTCTTC 2 cut(s) 153, 333
EarI CTCTTC 2 cut(s) 153, 333
Eco32I GATATC 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 159
EcoRV GATATC 1 cut(s) 78
Esp3I CGTCTC 1 cut(s) 150
FaeI CATG 1 cut(s) 217
FaiI YATR 6 cut(s) 42, 63, 131, 215, 445, 447
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FatI CATG 1 cut(s) 213
Fnu4HI GCNGC 2 cut(s) 99, 221
FokI GGATG 1 cut(s) 437
Fsp4HI GCNGC 2 cut(s) 99, 221
FspBI CTAG 1 cut(s) 114
GluI GCNGC 2 cut(s) 99, 221
HaeIII GGCC 1 cut(s) 223
HgaI GACGC 1 cut(s) 132
Hin1II CATG 1 cut(s) 217
HinfI GANTC 1 cut(s) 355
Hpy188I TCNGA 2 cut(s) 202, 467
Hpy188III TCNNGA 3 cut(s) 55, 137, 365
HpyAV CCTTC 2 cut(s) 176, 216
HpyCH4V TGCA 6 cut(s) 26, 34, 101, 107, 194, 473
HpyF10VI GCNNNNNNNGC 2 cut(s) 95, 104
HpyF3I CTNAG 2 cut(s) 243, 324
Hsp92II CATG 1 cut(s) 217
LguI GCTCTTC 1 cut(s) 333
LmnI GCTCC 1 cut(s) 217
LpnPI CCDG 3 cut(s) 31, 150, 289
Lsp1109I GCAGC 1 cut(s) 85
MaeI CTAG 1 cut(s) 114
MbiI CCGCTC 1 cut(s) 220
MboII GAAGA 3 cut(s) 140, 350, 380
MfeI CAATTG 3 cut(s) 102, 290, 350
MluCI AATT 4 cut(s) 102, 290, 299, 350
MlyI GAGTC 1 cut(s) 364
MmeI TCCRAC 1 cut(s) 445
MnlI CCTC 2 cut(s) 395, 415
MseI TTAA 1 cut(s) 254
MunI CAATTG 3 cut(s) 102, 290, 350
Mva1269I GAATGC 1 cut(s) 308
MwoI GCNNNNNNNGC 2 cut(s) 95, 104
NlaIII CATG 1 cut(s) 217
PciSI GCTCTTC 1 cut(s) 333
PctI GAATGC 1 cut(s) 308
PkrI GCNGC 2 cut(s) 100, 222
PleI GAGTC 1 cut(s) 363
PpsI GAGTC 1 cut(s) 363
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 333
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 2 cut(s) 99, 221
SchI GAGTC 1 cut(s) 364
SetI ASST 7 cut(s) 100, 208, 244, 270, 378, 452, 479
SmlI CTYRAG 2 cut(s) 363, 386
SmoI CTYRAG 2 cut(s) 363, 386
Sse9I AATT 4 cut(s) 102, 290, 299, 350
SsiI CCGC 1 cut(s) 220
SspMI CTAG 1 cut(s) 114
TasI AATT 4 cut(s) 102, 290, 299, 350
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 223
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 1 cut(s) 91
TseI GCWGC 1 cut(s) 98
TspDTI ATGAA 4 cut(s) 78, 150, 195, 202
TspRI CASTG 1 cut(s) 91
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.