RLG00000001662

No apical meristem-associated C-terminal domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0011634
Physical Location & Seq
Forward (+)
18920995 .. 18921534
540 bp
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UTR
Exon/CDS
Intron
RLM00000001662

Sequence Viewer

Length: 540 bp
ATGTACAGGGACAGAGAAAAAGTTGCATTTTTGCAAGAGCATAACTGGAATATCTTGAAGTATGAGCAAAAGTGGGTATCGTTCAGTGCCAAGAAAGCTGCAATTGCAACTACTAGAAAAAGGAAGTCTGTAAATCCTGAAGTGTCTCTTCAAAATGCTTCATCTCCAATAGTTTTAGATGAAGGCAATGGTGCAACTTCTGAACCTTCTTTCATGGAGCGGCCAATAGGACAAAAACAAGCTAAAGACATGTTAAAGAAAGAAAAGGCAAAAGAGAATGTGGCTTCACAATTGGAACAATTCAGAGCATTCAAAAGAGAAACTGAACGTAGGAAAGAAGAACGTTTCCAATTGAGCCTTTCTCAAGAAGAAAAGCTCTATATCCTCAAGGAAAAAAAGGAGCAAGCGAAGCAACAACGAGAGGATGATAAAATAATGTTGATAGATATCACTACTCTGCCGGAAATGCAAGCTGCATATTTTAGTGACCGTCAGGCAGAAATCATGGCAAGAAGAGCCCGTCCAAGTGAAAGTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM-associated

Protein Analysis

180

Amino Acids

21.05

Weight (kDa)

9.5

Isoelectric Point (pI)

55.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM-associated PF14303 10 - 168 5.6e-17 No apical meristem-associated C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 220
AciI CCGC 1 cut(s) 220
AclI AACGTT 1 cut(s) 343
AcoI YGGCCR 1 cut(s) 221
AcuI CTGAAG 1 cut(s) 159
AfaI GTAC 1 cut(s) 5
AflIII ACRYGT 1 cut(s) 249
AgsI TTSAA 3 cut(s) 58, 152, 313
AluBI AGCT 4 cut(s) 98, 242, 376, 473
AluI AGCT 4 cut(s) 98, 242, 376, 473
Alw26I GTCTC 1 cut(s) 150
AoxI GGCC 1 cut(s) 221
ApeKI GCWGC 2 cut(s) 98, 473
BanII GRGCYC 1 cut(s) 520
BbvI GCAGC 2 cut(s) 85, 460
BcoDI GTCTC 1 cut(s) 150
BfaI CTAG 1 cut(s) 114
BisI GCNGC 3 cut(s) 99, 221, 474
BlsI GCNGC 3 cut(s) 100, 222, 475
BplI GAGNNNNNCTC 2 cut(s) 346, 378
BpuEI CTTGAG 2 cut(s) 348, 371
BsaBI GATNNNNATC 1 cut(s) 446
Bse1I ACTGG 1 cut(s) 50
Bse3DI GCAATG 1 cut(s) 193
Bse8I GATNNNNATC 1 cut(s) 446
BseGI GGATG 1 cut(s) 430
BseJI GATNNNNATC 1 cut(s) 446
BseMI GCAATG 1 cut(s) 193
BseNI ACTGG 1 cut(s) 50
BseXI GCAGC 2 cut(s) 85, 460
BshFI GGCC 1 cut(s) 223
BsiSI CCGG 1 cut(s) 461
BslFI GGGAC 1 cut(s) 23
BsmAI GTCTC 1 cut(s) 150
BsmFI GGGAC 1 cut(s) 23
BsmI GAATGC 1 cut(s) 308
BsnI GGCC 1 cut(s) 223
Bsp1286I GDGCHC 1 cut(s) 520
Bsp1407I TGTACA 1 cut(s) 3
BspACI CCGC 1 cut(s) 220
BspANI GGCC 1 cut(s) 223
BspQI GCTCTTC 1 cut(s) 508
BsrBI CCGCTC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 193
BsrGI TGTACA 1 cut(s) 3
BsrI ACTGG 1 cut(s) 50
Bst4CI ACNGT 1 cut(s) 491
Bst6I CTCTTC 2 cut(s) 153, 508
BstAUI TGTACA 1 cut(s) 3
BstC8I GCNNGC 2 cut(s) 405, 471
BstF5I GGATG 1 cut(s) 430
BstMAI GTCTC 1 cut(s) 150
BstMWI GCNNNNNNNGC 5 cut(s) 95, 104, 409, 466, 515
BstNSI RCATGY 1 cut(s) 253
BstV1I GCAGC 2 cut(s) 85, 460
BsuRI GGCC 1 cut(s) 223
BtsCI GGATG 1 cut(s) 430
BtsIMutI CAGTG 1 cut(s) 91
Cac8I GCNNGC 2 cut(s) 405, 471
Csp6I GTAC 1 cut(s) 4
CviAII CATG 3 cut(s) 214, 250, 505
CviJI RGCY 8 cut(s) 98, 223, 242, 284, 357, 376, 473, 518
CviKI_1 RGCY 8 cut(s) 98, 223, 242, 284, 357, 376, 473, 518
CviQI GTAC 1 cut(s) 4
EaeI YGGCCR 1 cut(s) 221
Eam1104I CTCTTC 2 cut(s) 153, 508
EarI CTCTTC 2 cut(s) 153, 508
Eco24I GRGCYC 1 cut(s) 520
Eco32I GATATC 1 cut(s) 448
Eco57I CTGAAG 1 cut(s) 159
EcoRV GATATC 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 520
FaeI CATG 3 cut(s) 217, 253, 508
FaiI YATR 8 cut(s) 42, 63, 215, 251, 381, 478, 506, 536
FalI AAGNNNNNCTT 2 cut(s) 132, 164
FaqI GGGAC 1 cut(s) 23
FatI CATG 3 cut(s) 213, 249, 504
Fnu4HI GCNGC 3 cut(s) 99, 221, 474
FokI GGATG 1 cut(s) 437
FriOI GRGCYC 1 cut(s) 520
Fsp4HI GCNGC 3 cut(s) 99, 221, 474
FspBI CTAG 1 cut(s) 114
GluI GCNGC 3 cut(s) 99, 221, 474
HaeIII GGCC 1 cut(s) 223
HapII CCGG 1 cut(s) 461
Hin1II CATG 3 cut(s) 217, 253, 508
HpaII CCGG 1 cut(s) 461
Hpy188I TCNGA 2 cut(s) 202, 305
Hpy188III TCNNGA 3 cut(s) 55, 137, 365
HpyAV CCTTC 2 cut(s) 176, 216
HpyCH4III ACNGT 1 cut(s) 491
HpyCH4IV ACGT 2 cut(s) 328, 343
HpyCH4V TGCA 7 cut(s) 26, 34, 101, 107, 194, 469, 476
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 104, 409, 466, 515
HpySE526I ACGT 2 cut(s) 328, 343
Hsp92II CATG 3 cut(s) 217, 253, 508
LguI GCTCTTC 1 cut(s) 508
LmnI GCTCC 2 cut(s) 217, 400
LpnPI CCDG 4 cut(s) 31, 150, 474, 479
Lsp1109I GCAGC 2 cut(s) 85, 460
MaeI CTAG 1 cut(s) 114
MaeII ACGT 2 cut(s) 328, 343
MaeIII GTNAC 1 cut(s) 485
MbiI CCGCTC 1 cut(s) 220
MboII GAAGA 4 cut(s) 140, 350, 380, 525
MfeI CAATTG 3 cut(s) 102, 290, 350
MhlI GDGCHC 1 cut(s) 520
MluCI AATT 4 cut(s) 102, 290, 299, 350
MnlI CCTC 2 cut(s) 395, 415
MseI TTAA 1 cut(s) 254
MspI CCGG 1 cut(s) 461
MunI CAATTG 3 cut(s) 102, 290, 350
Mva1269I GAATGC 1 cut(s) 308
MwoI GCNNNNNNNGC 5 cut(s) 95, 104, 409, 466, 515
NlaIII CATG 3 cut(s) 217, 253, 508
NmuCI GTSAC 1 cut(s) 485
NspI RCATGY 1 cut(s) 253
PciI ACATGT 1 cut(s) 249
PciSI GCTCTTC 1 cut(s) 508
PctI GAATGC 1 cut(s) 308
PkrI GCNGC 3 cut(s) 100, 222, 475
PscI ACATGT 1 cut(s) 249
Psp1406I AACGTT 1 cut(s) 343
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SapI GCTCTTC 1 cut(s) 508
SaqAI TTAA 1 cut(s) 254
SatI GCNGC 3 cut(s) 99, 221, 474
SduI GDGCHC 1 cut(s) 520
SetI ASST 7 cut(s) 100, 208, 244, 331, 346, 378, 475
SmlI CTYRAG 2 cut(s) 363, 386
SmoI CTYRAG 2 cut(s) 363, 386
Sse9I AATT 4 cut(s) 102, 290, 299, 350
SsiI CCGC 1 cut(s) 220
SspMI CTAG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 491
TaiI ACGT 2 cut(s) 331, 346
TasI AATT 4 cut(s) 102, 290, 299, 350
TatI WGTACW 1 cut(s) 3
TauI GCSGC 1 cut(s) 223
Tru1I TTAA 1 cut(s) 254
Tru9I TTAA 1 cut(s) 254
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 1 cut(s) 485
TseI GCWGC 2 cut(s) 98, 473
Tsp45I GTSAC 1 cut(s) 485
TspDTI ATGAA 3 cut(s) 150, 195, 202
TspRI CASTG 1 cut(s) 91
XceI RCATGY 1 cut(s) 253
XspI CTAG 1 cut(s) 114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.