Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002720.1

Orthogroup ID

OG0011634

Physical Location & Seq

Genomic Coordinates Reverse (-)

78608 .. 79344

Gene Structure 737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002720.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atgggttatgaaaatgctacatactttaccgatctcctcaacacagattcagaacttaatgactctttttttatccacaacgatggcctcaatatcgatggttgcgtgtcttctgaagcacttgctatgacatctgaaataccttctcaaaataaagcctctgcaaagagcaaaaatagatctacgaagtactcagttcaagaagacattcttctggtatctgcacggctcgacattggcttagatccagtgaaaggaaatgatcaaaaaggactgcatattgggctagaattgcataatactatcataaaaacaagacttttgaaactaaccgggatgctagttctctacatgcaacaccgttggtcggcaattcaagcggctgttaataagttttgtggatactatgaacagattctgaatcgaccacaaagtgctctaacgagcgaaaaaaagatgtatagagacagagaaaaagttgcagttttgcaagaacataactggaatatcttgaagtacgagcaaaagtggatatcgttcagtgccaagaaagctacaattgcaactactagaaaaaggaagtctgtaaatcctgaagcgtctcttcaaaatgcttcaaaatcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM-associated

Protein Analysis

208

Amino Acids

23.55

Weight (kDa)

9.21

Isoelectric Point (pI)

50.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011634)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g31921
rosa_laevigata	RLG00000001662 RLG00000029965 RLG00000031902 RLG00000032919
rosa_multiflora	Rmu_sc0002545.1_g000001 Rmu_sc0002720.1_g000018 Rmu_sc0004092.1_g000030
rosa_roxburghii	Rroxscaffold_1G00010410
rosa_rugosa	Rorug02G0047500 Rorug03G0276600
rosa_samantha	Rh3DG253500 Rh4AG050300 Rh4BG394100 Rh4CG257500 Rh4CG409000 Rh6CG047300 Rh6DG042800
rosa_wichuraiana	Rw6G020280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	380
AclWI	GGATC	1 cut(s)	239
AcuI	CTGAAG	2 cut(s)	135, 615
AdeI	CACNNNGTG	1 cut(s)	434
AfaI	GTAC	2 cut(s)	191, 518
AfiI	CCNNNNNNNGG	2 cut(s)	254, 367
AgsI	TTSAA	6 cut(s)	200, 325, 377, 514, 608, 618
AluBI	AGCT	1 cut(s)	554
AluI	AGCT	1 cut(s)	554
Alw21I	GWGCWC	1 cut(s)	439
Alw26I	GTCTC	2 cut(s)	459, 606
AlwI	GGATC	1 cut(s)	239
AlwNI	CAGNNNCTG	1 cut(s)	418
AoxI	GGCC	1 cut(s)	85
Asp700I	GAANNNNTTC	2 cut(s)	207, 414
AsuC2I	CCSGG	1 cut(s)	334
BbsI	GAAGAC	2 cut(s)	102, 210
Bbv12I	GWGCWC	1 cut(s)	439
BccI	CCATC	2 cut(s)	77, 92
BceAI	ACGGC	1 cut(s)	242
BciVI	GTATCC	1 cut(s)	395
BclI	TGATCA	1 cut(s)	262
BcnI	CCSGG	1 cut(s)	334
BcoDI	GTCTC	2 cut(s)	459, 606
BfaI	CTAG	3 cut(s)	287, 341, 570
BfuI	GTATCC	1 cut(s)	395
BglII	AGATCT	1 cut(s)	179
BisI	GCNGC	1 cut(s)	381
BlsI	GCNGC	1 cut(s)	382
BmcAI	AGTACT	1 cut(s)	191
Bme1390I	CCNGG	1 cut(s)	334
BmrFI	CCNGG	1 cut(s)	334
BmsI	GCATC	1 cut(s)	327
BpiI	GAAGAC	2 cut(s)	102, 210
BpuMI	CCSGG	1 cut(s)	334
Bsa29I	ATCGAT	1 cut(s)	96
Bsc4I	CCNNNNNNNGG	2 cut(s)	254, 367
Bse1I	ACTGG	2 cut(s)	248, 506
BseCI	ATCGAT	1 cut(s)	96
BseGI	GGATG	1 cut(s)	342
BseLI	CCNNNNNNNGG	2 cut(s)	254, 367
BseMII	CTCAG	1 cut(s)	207
BseNI	ACTGG	2 cut(s)	248, 506
BseRI	GAGGAG	1 cut(s)	26
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	87
BshVI	ATCGAT	1 cut(s)	96
BsiHKAI	GWGCWC	1 cut(s)	439
BsiSI	CCGG	1 cut(s)	333
BslI	CCNNNNNNNGG	2 cut(s)	254, 367
BsmAI	GTCTC	2 cut(s)	459, 606
BsmBI	CGTCTC	1 cut(s)	606
BsnI	GGCC	1 cut(s)	87
Bsp1286I	GDGCHC	1 cut(s)	439
Bsp143I	GATC	4 cut(s)	31, 179, 244, 262
BspACI	CCGC	1 cut(s)	380
BspANI	GGCC	1 cut(s)	87
BspCNI	CTCAG	1 cut(s)	206
BspDI	ATCGAT	1 cut(s)	96
BspPI	GGATC	1 cut(s)	239
BsrI	ACTGG	2 cut(s)	248, 506
BssMI	GATC	4 cut(s)	31, 179, 244, 262
Bst4CI	ACNGT	1 cut(s)	362
Bst6I	CTCTTC	1 cut(s)	609
BstDEI	CTNAG	2 cut(s)	193, 241
BstF5I	GGATG	1 cut(s)	342
BstKTI	GATC	4 cut(s)	34, 182, 247, 265
BstMAI	GTCTC	2 cut(s)	459, 606
BstMBI	GATC	4 cut(s)	31, 179, 244, 262
BstMWI	GCNNNNNNNGC	5 cut(s)	283, 292, 377, 551, 560
BstNSI	RCATGY	1 cut(s)	355
BstSCI	CCNGG	1 cut(s)	332
BstV2I	GAAGAC	2 cut(s)	102, 210
BstX2I	RGATCY	2 cut(s)	179, 244
BstXI	CCANNNNNNTGG	1 cut(s)	83
BstYI	RGATCY	2 cut(s)	179, 244
Bsu15I	ATCGAT	1 cut(s)	96
BsuI	GTATCC	1 cut(s)	395
BsuRI	GGCC	1 cut(s)	87
BsuTUI	ATCGAT	1 cut(s)	96
BtsCI	GGATG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	255, 547
CaiI	CAGNNNCTG	1 cut(s)	418
ClaI	ATCGAT	1 cut(s)	96
CseI	GACGC	1 cut(s)	588
Csp6I	GTAC	2 cut(s)	190, 517
CviAII	CATG	1 cut(s)	352
CviJI	RGCY	7 cut(s)	87, 158, 229, 240, 286, 383, 554
CviKI_1	RGCY	7 cut(s)	87, 158, 229, 240, 286, 383, 554
CviQI	GTAC	2 cut(s)	190, 517
DdeI	CTNAG	2 cut(s)	193, 241
DpnI	GATC	4 cut(s)	33, 181, 246, 264
DpnII	GATC	4 cut(s)	31, 179, 244, 262
DraIII	CACNNNGTG	1 cut(s)	434
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
Eco32I	GATATC	1 cut(s)	534
Eco57I	CTGAAG	2 cut(s)	135, 615
EcoRV	GATATC	1 cut(s)	534
Esp3I	CGTCTC	1 cut(s)	606
FaeI	CATG	1 cut(s)	355
FalI	AAGNNNNNCTT	4 cut(s)	195, 227, 588, 620
FatI	CATG	1 cut(s)	351
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	1 cut(s)	381
FokI	GGATG	1 cut(s)	349
Fsp4HI	GCNGC	1 cut(s)	381
FspBI	CTAG	3 cut(s)	287, 341, 570
GluI	GCNGC	1 cut(s)	381
HaeIII	GGCC	1 cut(s)	87
HapII	CCGG	1 cut(s)	333
HgaI	GACGC	1 cut(s)	588
Hin1II	CATG	1 cut(s)	355
HinfI	GANTC	4 cut(s)	47, 62, 415, 421
HpaII	CCGG	1 cut(s)	333
Hpy188I	TCNGA	4 cut(s)	52, 115, 136, 420
Hpy188III	TCNNGA	4 cut(s)	200, 511, 593, 624
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	1 cut(s)	362
HpyCH4V	TGCA	8 cut(s)	164, 224, 277, 295, 355, 482, 490, 563
HpyF10VI	GCNNNNNNNGC	5 cut(s)	283, 292, 377, 551, 560
HpyF3I	CTNAG	2 cut(s)	193, 241
Hsp92II	CATG	1 cut(s)	355
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	4 cut(s)	31, 179, 244, 262
LpnPI	CCDG	5 cut(s)	200, 261, 346, 487, 606
LweI	GCATC	1 cut(s)	327
MaeI	CTAG	3 cut(s)	287, 341, 570
MalI	GATC	4 cut(s)	33, 181, 246, 264
MboI	GATC	4 cut(s)	31, 179, 244, 262
MboII	GAAGA	4 cut(s)	102, 203, 215, 596
MfeI	CAATTG	1 cut(s)	558
MflI	RGATCY	2 cut(s)	179, 244
MhlI	GDGCHC	1 cut(s)	439
MluCI	AATT	3 cut(s)	290, 372, 558
MlyI	GAGTC	1 cut(s)	56
MnlI	CCTC	3 cut(s)	47, 98, 169
MroXI	GAANNNNTTC	2 cut(s)	207, 414
MseI	TTAA	2 cut(s)	57, 387
MslI	CAYNNNNRTG	1 cut(s)	81
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	1 cut(s)	334
MunI	CAATTG	1 cut(s)	558
MwoI	GCNNNNNNNGC	5 cut(s)	283, 292, 377, 551, 560
NciI	CCSGG	1 cut(s)	334
NdeII	GATC	4 cut(s)	31, 179, 244, 262
NlaIII	CATG	1 cut(s)	355
NspI	RCATGY	1 cut(s)	355
PcsI	WCGNNNNNNNCGW	1 cut(s)	102
PdmI	GAANNNNTTC	2 cut(s)	207, 414
PfeI	GAWTC	3 cut(s)	47, 415, 421
PkrI	GCNGC	1 cut(s)	382
PleI	GAGTC	1 cut(s)	56
PpsI	GAGTC	1 cut(s)	56
PstNI	CAGNNNCTG	1 cut(s)	418
PsuI	RGATCY	2 cut(s)	179, 244
RsaI	GTAC	2 cut(s)	191, 518
RsaNI	GTAC	2 cut(s)	190, 517
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	2 cut(s)	57, 387
SatI	GCNGC	1 cut(s)	381
Sau3AI	GATC	4 cut(s)	31, 179, 244, 262
ScaI	AGTACT	1 cut(s)	191
SchI	GAGTC	1 cut(s)	56
ScrFI	CCNGG	1 cut(s)	334
SduI	GDGCHC	1 cut(s)	439
SetI	ASST	2 cut(s)	145, 556
SfaNI	GCATC	1 cut(s)	327
SmiMI	CAYNNNNRTG	1 cut(s)	81
Sse9I	AATT	3 cut(s)	290, 372, 558
SsiI	CCGC	1 cut(s)	380
SspMI	CTAG	3 cut(s)	287, 341, 570
StyD4I	CCNGG	1 cut(s)	332
TaaI	ACNGT	1 cut(s)	362
TaqI	TCGA	3 cut(s)	96, 231, 424
TasI	AATT	3 cut(s)	290, 372, 558
TatI	WGTACW	1 cut(s)	189
TauI	GCSGC	1 cut(s)	383
TfiI	GAWTC	3 cut(s)	47, 415, 421
Tru1I	TTAA	2 cut(s)	57, 387
Tru9I	TTAA	2 cut(s)	57, 387
TscAI	CASTG	2 cut(s)	255, 547
TspDTI	ATGAA	2 cut(s)	24, 423
TspRI	CASTG	2 cut(s)	255, 547
XceI	RCATGY	1 cut(s)	355
XmnI	GAANNNNTTC	2 cut(s)	207, 414
XspI	CTAG	3 cut(s)	287, 341, 570
ZrmI	AGTACT	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.