FvH4_3g33270

F-box LRR-repeat protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0006396
Physical Location & Seq
Forward (+)
28671755 .. 28674421
2667 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g33270.t1

Sequence Viewer

Length: 1314 bp
ATGGCTATGCTCACACGGAGTTTAGTGTCAGCCAGCATACCTTTTCTTAGAGGATTTTCATCAGCAGCAACTAGTTTTCTTAAAACTGGAGATGTATTAAAGCGAGCTAGAATTTTCACAAGTGAAGAGGTCTTGGATTACTCTAAAGTGAGTCATGACTCTAATCCTCTGCATTTTGATTCTGAGTCTGCTCAAAATGCTGGATTCGAAGACCGAGTGGTCCACGGGATGCTTGTTGCTGGCCTGTTTCCCAAGATCATATCTTCTCATTTTCCTGGAGCCGTATATGTATCCCAAAGTCTGCATTTCAGGTCACCTGTCTATATTGGAGAAGAGATAGTTGGCGAGACGTTTATGGAAATGAAGGATCAACGAAGATGGGAAGACCTAAACACAGACTGCCTGGTGAATATTTTTGGAAAAGTAGGTGTGGATTCACTGCTCTTGGATGTTCCCTTTGTATGCAAGACATGGTTTAGGGCAAGCCTCGATCCCTCGTGCTGGGAATTTCCTACATTTCCTAAACTCTGGACTGACAGTTATATCTTTGACATTGATTATGAAGATCAGGATTTTAATACCTTTGCTGATAGATGTGCATATCAATATCAGGTTCGTCGGAGTCTTTGCACTGTTGCTTCATTTGTGCAGTTTATTGTAAATCGTAGCAGGGGGTATTCTACTTCTCTCAGGCTACCTGTATACTCTTCTAATGAAGAGTTGAGACATATTGCTGATGTATGTCCTGGCCTCAAGGTTCTGGCACTACCTCGGCTTGTACAAACTTTTAACTTGAACAGAATCCTAGAAATTATTGGCAATTGGAAATACCTGGAGACATTGTTTATGGCAGACAGCTTTGGTATGGAGAAAATCCTGTCACAGATCAGCATTTGCTGTAAAAATTTCTCTTGTTTACATATGTTTAATACACGTATATCTGAAGATGAGGCAATGGAAATTGTTAGCCACCTCCCTAAGCTGAAGCAGTTGAGCTTGATAAATGGACATATTGGTCGGGATAATCTTGTGAAGTTACTAAAAGGTTGCAAGGATCTTGTTCTTTTGGATGTAAGAGATTGTGTAGGTTTTGATGAGGGTGATGCTGAAATATTGAAGCTTGCTTCTCATATTACTGAATTCAGCTGTGAGGGTTCAAAAAGTGCTGACAAATACTACAGGGACAACTATGAAGAGTATGGGGAGTCTGAGCTTTCTGCTGACATGTATGATTTCTCTGAAGACGAGTATGGTTACTATGAAGACGAGTACGGTTACTGTGAAGACATATCTGCATTCGGAGAAATGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

438

Amino Acids

49.98

Weight (kDa)

4.82

Isoelectric Point (pI)

45.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MaoC_dehydratas PF01575 37 - 126 3.1e-18 MaoC like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 218, 1014
AccI GTMKAC 1 cut(s) 702
AclWI GGATC 3 cut(s) 375, 485, 1062
AcsI RAATTY 4 cut(s) 111, 506, 904, 1139
AcuI CTGAAG 3 cut(s) 963, 1004, 1260
AfaI GTAC 3 cut(s) 780, 1271, 1310
AfiI CCNNNNNNNGG 1 cut(s) 501
AflIII ACRYGT 2 cut(s) 932, 1224
AgsI TTSAA 3 cut(s) 796, 1117, 1158
AhlI ACTAGT 1 cut(s) 71
AjnI CCWGG 4 cut(s) 274, 402, 745, 831
AjuI GAANNNNNNNTTGG 2 cut(s) 324, 356
AluBI AGCT 7 cut(s) 107, 858, 982, 996, 1120, 1146, 1213
AluI AGCT 7 cut(s) 107, 858, 982, 996, 1120, 1146, 1213
Alw26I GTCTC 3 cut(s) 341, 718, 830
AlwI GGATC 3 cut(s) 375, 485, 1062
AoxI GGCC 2 cut(s) 241, 748
ApeKI GCWGC 1 cut(s) 65
ApoI RAATTY 4 cut(s) 111, 506, 904, 1139
AspS9I GGNCC 1 cut(s) 220
AsuHPI GGTGA 3 cut(s) 306, 418, 1112
AsuII TTCGAA 1 cut(s) 207
AvaII GGWCC 1 cut(s) 220
BauI CACGAG 1 cut(s) 496
BbsI GAAGAC 5 cut(s) 216, 390, 1248, 1269, 1290
BbvI GCAGC 1 cut(s) 77
BccI CCATC 1 cut(s) 372
BceAI ACGGC 1 cut(s) 266
BciT130I CCWGG 4 cut(s) 276, 404, 747, 833
BciVI GTATCC 1 cut(s) 301
BcoDI GTCTC 3 cut(s) 341, 718, 830
BcuI ACTAGT 1 cut(s) 71
BfaI CTAG 4 cut(s) 72, 108, 806, 1312
BfmI CTRYAG 1 cut(s) 1177
BfuI GTATCC 1 cut(s) 301
BisI GCNGC 1 cut(s) 66
BlsI GCNGC 1 cut(s) 67
Bme1390I CCNGG 4 cut(s) 276, 404, 747, 833
Bme18I GGWCC 1 cut(s) 220
BmgT120I GGNCC 1 cut(s) 220
BmiI GGNNCC 1 cut(s) 280
BmrFI CCNGG 4 cut(s) 276, 404, 747, 833
BmsI GCATC 2 cut(s) 219, 1093
BpiI GAAGAC 5 cut(s) 216, 390, 1248, 1269, 1290
BpmI CTGGAG 3 cut(s) 108, 297, 854
Bpu10I CCTNAGC 1 cut(s) 978
Bpu14I TTCGAA 1 cut(s) 207
BpuEI CTTGAG 1 cut(s) 737
BsaAI YACGTR 1 cut(s) 935
BsaBI GATNNNNATC 1 cut(s) 58
BsaJI CCNNGG 2 cut(s) 223, 770
BsaXI ACNNNNNCTCC 2 cut(s) 827, 857
Bsc4I CCNNNNNNNGG 1 cut(s) 501
Bse1I ACTGG 1 cut(s) 91
Bse3DI GCAATG 1 cut(s) 960
Bse8I GATNNNNATC 1 cut(s) 58
BseBI CCWGG 4 cut(s) 276, 404, 747, 833
BseDI CCNNGG 2 cut(s) 223, 770
BseGI GGATG 3 cut(s) 234, 454, 1075
BseJI GATNNNNATC 1 cut(s) 58
BseLI CCNNNNNNNGG 1 cut(s) 501
BseMI GCAATG 1 cut(s) 960
BseMII CTCAG 3 cut(s) 174, 703, 1200
BseNI ACTGG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 77
BseYI CCCAGC 1 cut(s) 501
BsgI GTGCAG 1 cut(s) 668
BshFI GGCC 2 cut(s) 243, 750
BslFI GGGAC 1 cut(s) 1196
BslI CCNNNNNNNGG 1 cut(s) 501
BsmAI GTCTC 3 cut(s) 341, 718, 830
BsmBI CGTCTC 1 cut(s) 341
BsmFI GGGAC 1 cut(s) 1196
BsmI GAATGC 1 cut(s) 1295
BsnI GGCC 2 cut(s) 243, 750
Bsp119I TTCGAA 1 cut(s) 207
Bsp1407I TGTACA 1 cut(s) 778
Bsp143I GATC 6 cut(s) 255, 367, 490, 565, 885, 1054
BspANI GGCC 2 cut(s) 243, 750
BspCNI CTCAG 3 cut(s) 175, 702, 1201
BspHI TCATGA 1 cut(s) 154
BspLI GGNNCC 1 cut(s) 280
BspPI GGATC 3 cut(s) 375, 485, 1062
BspT104I TTCGAA 1 cut(s) 207
BsrDI GCAATG 1 cut(s) 960
BsrGI TGTACA 1 cut(s) 778
BsrI ACTGG 1 cut(s) 91
BssECI CCNNGG 2 cut(s) 223, 770
BssMI GATC 6 cut(s) 255, 367, 490, 565, 885, 1054
BssNAI GTATAC 1 cut(s) 703
BssSI CACGAG 1 cut(s) 496
Bst1107I GTATAC 1 cut(s) 703
Bst2BI CACGAG 1 cut(s) 496
Bst2UI CCWGG 4 cut(s) 276, 404, 747, 833
Bst4CI ACNGT 4 cut(s) 539, 634, 1274, 1280
Bst6I CTCTTC 5 cut(s) 120, 327, 711, 712, 1188
BstAUI TGTACA 1 cut(s) 778
BstBAI YACGTR 1 cut(s) 935
BstBI TTCGAA 1 cut(s) 207
BstC8I GCNNGC 5 cut(s) 34, 105, 241, 484, 1122
BstDEI CTNAG 5 cut(s) 47, 183, 689, 978, 1209
BstDSI CCRYGG 1 cut(s) 223
BstEII GGTNACC 1 cut(s) 312
BstF5I GGATG 3 cut(s) 234, 454, 1075
BstKTI GATC 6 cut(s) 258, 370, 493, 568, 888, 1057
BstMAI GTCTC 3 cut(s) 341, 718, 830
BstMBI GATC 6 cut(s) 255, 367, 490, 565, 885, 1054
BstMWI GCNNNNNNNGC 1 cut(s) 197
BstNI CCWGG 4 cut(s) 276, 404, 747, 833
BstNSI RCATGY 1 cut(s) 1228
BstPI GGTNACC 1 cut(s) 312
BstSCI CCNGG 4 cut(s) 274, 402, 745, 831
BstSFI CTRYAG 1 cut(s) 1177
BstV1I GCAGC 1 cut(s) 77
BstV2I GAAGAC 5 cut(s) 216, 390, 1248, 1269, 1290
BstX2I RGATCY 1 cut(s) 1054
BstYI RGATCY 1 cut(s) 1054
BstZ17I GTATAC 1 cut(s) 703
BsuI GTATCC 1 cut(s) 301
BsuRI GGCC 2 cut(s) 243, 750
BtgI CCRYGG 1 cut(s) 223
BtsCI GGATG 3 cut(s) 234, 454, 1075
BtsI GCAGTG 1 cut(s) 437
BtsIMutI CAGTG 2 cut(s) 437, 630
Cac8I GCNNGC 5 cut(s) 34, 105, 241, 484, 1122
CciI TCATGA 1 cut(s) 154
Cfr13I GGNCC 1 cut(s) 220
Csp6I GTAC 3 cut(s) 779, 1270, 1309
CviAII CATG 3 cut(s) 155, 471, 1225
CviQI GTAC 3 cut(s) 779, 1270, 1309
DdeI CTNAG 5 cut(s) 47, 183, 689, 978, 1209
DpnI GATC 6 cut(s) 257, 369, 492, 567, 887, 1056
DpnII GATC 6 cut(s) 255, 367, 490, 565, 885, 1054
DrdI GACNNNNNNGTC 2 cut(s) 218, 1014
DseDI GACNNNNNNGTC 2 cut(s) 218, 1014
Eam1104I CTCTTC 5 cut(s) 120, 327, 711, 712, 1188
EarI CTCTTC 5 cut(s) 120, 327, 711, 712, 1188
Eco47I GGWCC 1 cut(s) 220
Eco57I CTGAAG 3 cut(s) 963, 1004, 1260
Eco91I GGTNACC 1 cut(s) 312
EcoO65I GGTNACC 1 cut(s) 312
EcoRI GAATTC 1 cut(s) 1139
EcoRII CCWGG 4 cut(s) 274, 402, 745, 831
Esp3I CGTCTC 1 cut(s) 341
FaeI CATG 3 cut(s) 158, 474, 1228
FaqI GGGAC 1 cut(s) 1196
FatI CATG 3 cut(s) 154, 470, 1224
FauNDI CATATG 1 cut(s) 921
FblI GTMKAC 1 cut(s) 702
Fnu4HI GCNGC 1 cut(s) 66
FokI GGATG 3 cut(s) 241, 461, 1082
Fsp4HI GCNGC 1 cut(s) 66
FspBI CTAG 4 cut(s) 72, 108, 806, 1312
GluI GCNGC 1 cut(s) 66
GsaI CCCAGC 1 cut(s) 505
GsuI CTGGAG 3 cut(s) 108, 297, 854
HaeIII GGCC 2 cut(s) 243, 750
Hin1II CATG 3 cut(s) 158, 474, 1228
HindIII AAGCTT 1 cut(s) 1118
HinfI GANTC 9 cut(s) 151, 158, 179, 185, 204, 434, 622, 801, 1205
HphI GGTGA 3 cut(s) 306, 418, 1112
Hpy166II GTNNAC 3 cut(s) 223, 703, 917
Hpy188I TCNGA 6 cut(s) 184, 621, 943, 1210, 1240, 1301
Hpy188III TCNNGA 4 cut(s) 155, 529, 569, 1019
Hpy8I GTNNAC 3 cut(s) 223, 703, 917
Hpy99I CGWCG 1 cut(s) 621
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 4 cut(s) 539, 634, 1274, 1280
HpyCH4IV ACGT 2 cut(s) 350, 934
HpyCH4V TGCA 8 cut(s) 172, 304, 465, 599, 630, 649, 1050, 1295
HpyF10VI GCNNNNNNNGC 1 cut(s) 197
HpyF3I CTNAG 5 cut(s) 47, 183, 689, 978, 1209
HpySE526I ACGT 2 cut(s) 350, 934
Hsp92II CATG 3 cut(s) 158, 474, 1228
Kzo9I GATC 6 cut(s) 255, 367, 490, 565, 885, 1054
LmnI GCTCC 1 cut(s) 278
Lsp1109I GCAGC 1 cut(s) 77
LweI GCATC 2 cut(s) 219, 1093
MaeI CTAG 4 cut(s) 72, 108, 806, 1312
MaeII ACGT 2 cut(s) 350, 934
MaeIII GTNAC 5 cut(s) 312, 879, 1035, 1253, 1274
MalI GATC 6 cut(s) 257, 369, 492, 567, 887, 1056
MboI GATC 6 cut(s) 255, 367, 490, 565, 885, 1054
MfeI CAATTG 1 cut(s) 820
MflI RGATCY 1 cut(s) 1054
MluCI AATT 7 cut(s) 111, 506, 810, 820, 904, 960, 1139
MlyI GAGTC 5 cut(s) 152, 160, 194, 631, 1214
MmeI TCCRAC 1 cut(s) 599
MseI TTAA 5 cut(s) 81, 98, 576, 789, 927
MspA1I CMGCKG 1 cut(s) 1146
MspR9I CCNGG 4 cut(s) 276, 404, 747, 833
MunI CAATTG 1 cut(s) 820
Mva1269I GAATGC 1 cut(s) 1295
MvaI CCWGG 4 cut(s) 276, 404, 747, 833
MwoI GCNNNNNNNGC 1 cut(s) 197
NdeI CATATG 1 cut(s) 921
NdeII GATC 6 cut(s) 255, 367, 490, 565, 885, 1054
NlaIII CATG 3 cut(s) 158, 474, 1228
NlaIV GGNNCC 1 cut(s) 280
NmeAIII GCCGAG 1 cut(s) 751
NmuCI GTSAC 2 cut(s) 312, 879
NspI RCATGY 1 cut(s) 1228
NspV TTCGAA 1 cut(s) 207
PagI TCATGA 1 cut(s) 154
PciI ACATGT 1 cut(s) 1224
PctI GAATGC 1 cut(s) 1295
PfeI GAWTC 4 cut(s) 179, 204, 434, 801
PfoI TCCNGGA 1 cut(s) 274
PkrI GCNGC 1 cut(s) 67
PleI GAGTC 5 cut(s) 152, 159, 193, 630, 1213
PpsI GAGTC 5 cut(s) 152, 159, 193, 630, 1213
Ppu21I YACGTR 1 cut(s) 935
PscI ACATGT 1 cut(s) 1224
Psp6I CCWGG 4 cut(s) 274, 402, 745, 831
PspEI GGTNACC 1 cut(s) 312
PspFI CCCAGC 1 cut(s) 501
PspGI CCWGG 4 cut(s) 274, 402, 745, 831
PspN4I GGNNCC 1 cut(s) 280
PspPI GGNCC 1 cut(s) 220
PsuI RGATCY 1 cut(s) 1054
PvuII CAGCTG 1 cut(s) 1146
RsaI GTAC 3 cut(s) 780, 1271, 1310
RsaNI GTAC 3 cut(s) 779, 1270, 1309
SaqAI TTAA 5 cut(s) 81, 98, 576, 789, 927
SatI GCNGC 1 cut(s) 66
Sau3AI GATC 6 cut(s) 255, 367, 490, 565, 885, 1054
Sau96I GGNCC 1 cut(s) 220
SchI GAGTC 5 cut(s) 152, 160, 194, 631, 1214
ScrFI CCNGG 4 cut(s) 276, 404, 747, 833
SfaNI GCATC 2 cut(s) 219, 1093
SfcI CTRYAG 1 cut(s) 1177
SfuI TTCGAA 1 cut(s) 207
SinI GGWCC 1 cut(s) 220
SmlI CTYRAG 1 cut(s) 752
SmoI CTYRAG 1 cut(s) 752
SpeI ACTAGT 1 cut(s) 71
Sse9I AATT 7 cut(s) 111, 506, 810, 820, 904, 960, 1139
SspI AATATT 2 cut(s) 412, 1113
SspMI CTAG 4 cut(s) 72, 108, 806, 1312
StyD4I CCNGG 4 cut(s) 274, 402, 745, 831
TaaI ACNGT 4 cut(s) 539, 634, 1274, 1280
TaiI ACGT 2 cut(s) 353, 937
TaqI TCGA 2 cut(s) 207, 489
TaqII GACCGA 1 cut(s) 228
TasI AATT 7 cut(s) 111, 506, 810, 820, 904, 960, 1139
TatI WGTACW 2 cut(s) 778, 1308
TfiI GAWTC 4 cut(s) 179, 204, 434, 801
Tru1I TTAA 5 cut(s) 81, 98, 576, 789, 927
Tru9I TTAA 5 cut(s) 81, 98, 576, 789, 927
TscAI CASTG 2 cut(s) 444, 637
TseFI GTSAC 2 cut(s) 312, 879
TseI GCWGC 1 cut(s) 65
Tsp45I GTSAC 2 cut(s) 312, 879
TspDTI ATGAA 7 cut(s) 48, 377, 576, 630, 729, 1206, 1275
TspGWI ACGGA 1 cut(s) 31
TspRI CASTG 2 cut(s) 444, 637
VpaK11BI GGWCC 1 cut(s) 220
XapI RAATTY 4 cut(s) 111, 506, 904, 1139
XceI RCATGY 1 cut(s) 1228
XmiI GTMKAC 1 cut(s) 702
XspI CTAG 4 cut(s) 72, 108, 806, 1312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.