Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006396

Physical Location & Seq

Genomic Coordinates Reverse (-)

50791491 .. 50794272

Gene Structure 2782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00202620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGATTTTCGAAAATGGGATCAGTTGGACCATGATTGTTTGGTGAAGATCTTTGCAAAAGTTGGAAGAGGTGATACAGAGTCATTTATGGAGTCAATGCTCATGGATGTTCCTTTTGTCTGCAAGTCGTGGCATAAAGCAAGCCTTGATCCTAAATGTTGGGAACGTCTCATTTTTCCCATCATTTCTACTGGTCTTTATAATACTGATGTTGAAACTGAAGACTGGACTTGTGATCCCTTTTTAAAAAGATTTGTTTCTGAATATCGAATCAATAAGAGCTTCTCCATCACTGCATTCATAAAGTTTATGGTTAATCGTAGCAAAGGATGTGCTACTGAAATCAGGCTACCTGTGTGCGCTTCAGAAGAAGCACTGAAACATGTTGCAGCTTCGTGTCCTCGCCTAAAGCTTTTGTCTTTGCCTGCTGATGTAGTCTACTATAAATCAAGAATGATCCCTGATATGATTGGCAAGTGGAAAGATTTGGAGAATTTGTTAATGGGAAGCTGCTACCATGATATGGAGAAAATCATTTCCCAAATAGGCCTTCACTGCAAGAATTTCTATTTTTTACATATTCCTGGCTGTCTGGTTCGCGAAGATGCTGCATCGGCAATTGCAAAGTTGCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

211

Amino Acids

24.3

Weight (kDa)

7.53

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33270
prunus_persica	Prupe.1G157900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0265521 RchiOBHm_Chr6g0265531
rosa_laevigata	RLG00000014182
rosa_multiflora	Rmu_co8123530.1_g000001 Rmu_co8387705.1_g000001 Rmu_sc0000217.1_g000007 Rmu_sc0000217.1_g000009 Rmu_sc0006004.1_g000006
rosa_roxburghii	Rroxscaffold_175G00432420 Rroxscaffold_175G00432440 Rroxscaffold_7G00202620 Rroxscaffold_7G00202640
rosa_rugosa	Rorug06G0017300
rosa_samantha	Rh6AG139500 Rh6AG139700 Rh6BG139100 Rh6BG139200 Rh6BG139600 Rh6CG136500 Rh6CG136600 Rh6CG136700 Rh6DG122700 Rh6DG123000
rosa_wichuraiana	Rw6G012010 Rw6G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	201
AccB7I	CCANNNNNTGG	1 cut(s)	523
AccI	GTMKAC	1 cut(s)	438
AccII	CGCG	1 cut(s)	600
AclWI	GGATC	4 cut(s)	27, 143, 230, 451
AcsI	RAATTY	2 cut(s)	493, 562
AcuI	CTGAAG	2 cut(s)	240, 348
AfiI	CCNNNNNNNGG	1 cut(s)	523
AflIII	ACRYGT	1 cut(s)	382
AgsI	TTSAA	1 cut(s)	215
AjnI	CCWGG	1 cut(s)	583
AjuI	GAANNNNNNNTTGG	2 cut(s)	534, 566
AluBI	AGCT	4 cut(s)	282, 392, 412, 510
AluI	AGCT	4 cut(s)	282, 392, 412, 510
Alw26I	GTCTC	1 cut(s)	173
AlwI	GGATC	4 cut(s)	27, 143, 230, 451
AoxI	GGCC	1 cut(s)	547
ApeKI	GCWGC	3 cut(s)	389, 510, 608
ApoI	RAATTY	2 cut(s)	493, 562
AspLEI	GCGC	1 cut(s)	362
AspS9I	GGNCC	1 cut(s)	28
AsuHPI	GGTGA	2 cut(s)	55, 83
AsuII	TTCGAA	1 cut(s)	10
AvaII	GGWCC	1 cut(s)	28
BarI	GAAGNNNNNNTAC	2 cut(s)	58, 90
BbsI	GAAGAC	1 cut(s)	228
BbvI	GCAGC	3 cut(s)	401, 497, 595
BccI	CCATC	2 cut(s)	188, 296
BcgI	CGANNNNNNTGC	2 cut(s)	590, 624
BciT130I	CCWGG	1 cut(s)	585
BcoDI	GTCTC	1 cut(s)	173
BglII	AGATCT	1 cut(s)	48
BisI	GCNGC	3 cut(s)	390, 511, 609
BlsI	GCNGC	3 cut(s)	391, 512, 610
Bme1390I	CCNGG	1 cut(s)	585
Bme18I	GGWCC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	28
BmrFI	CCNGG	1 cut(s)	585
BmsI	GCATC	2 cut(s)	595, 620
BpiI	GAAGAC	1 cut(s)	228
Bpu14I	TTCGAA	1 cut(s)	10
BsaXI	ACNNNNNCTCC	2 cut(s)	482, 512
Bsc4I	CCNNNNNNNGG	1 cut(s)	523
Bse1I	ACTGG	2 cut(s)	196, 230
BseBI	CCWGG	1 cut(s)	585
BseGI	GGATG	2 cut(s)	112, 335
BseLI	CCNNNNNNNGG	1 cut(s)	523
BseNI	ACTGG	2 cut(s)	196, 230
BseXI	GCAGC	3 cut(s)	401, 497, 595
Bsh1236I	CGCG	1 cut(s)	600
BshFI	GGCC	1 cut(s)	549
BslI	CCNNNNNNNGG	1 cut(s)	523
BsmAI	GTCTC	1 cut(s)	173
BsmBI	CGTCTC	1 cut(s)	173
BsmI	GAATGC	1 cut(s)	296
BsnI	GGCC	1 cut(s)	549
Bsp119I	TTCGAA	1 cut(s)	10
Bsp143I	GATC	5 cut(s)	19, 48, 148, 235, 456
Bsp68I	TCGCGA	1 cut(s)	600
BspANI	GGCC	1 cut(s)	549
BspFNI	CGCG	1 cut(s)	600
BspPI	GGATC	4 cut(s)	27, 143, 230, 451
BspT104I	TTCGAA	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	196, 230
BssMI	GATC	5 cut(s)	19, 48, 148, 235, 456
Bst2UI	CCWGG	1 cut(s)	585
Bst6I	CTCTTC	1 cut(s)	61
BstBI	TTCGAA	1 cut(s)	10
BstC8I	GCNNGC	2 cut(s)	142, 426
BstF5I	GGATG	2 cut(s)	112, 335
BstFNI	CGCG	1 cut(s)	600
BstHHI	GCGC	1 cut(s)	362
BstKTI	GATC	5 cut(s)	22, 51, 151, 238, 459
BstMAI	GTCTC	1 cut(s)	173
BstMBI	GATC	5 cut(s)	19, 48, 148, 235, 456
BstMWI	GCNNNNNNNGC	2 cut(s)	555, 614
BstNI	CCWGG	1 cut(s)	585
BstNSI	RCATGY	1 cut(s)	386
BstSCI	CCNGG	1 cut(s)	583
BstUI	CGCG	1 cut(s)	600
BstV1I	GCAGC	3 cut(s)	401, 497, 595
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	1 cut(s)	48
BstYI	RGATCY	1 cut(s)	48
BsuRI	GGCC	1 cut(s)	549
BtsCI	GGATG	2 cut(s)	112, 335
BtsI	GCAGTG	2 cut(s)	291, 553
BtsIMutI	CAGTG	3 cut(s)	291, 374, 553
BtuMI	TCGCGA	1 cut(s)	600
Cac8I	GCNNGC	2 cut(s)	142, 426
CfoI	GCGC	1 cut(s)	362
Cfr13I	GGNCC	1 cut(s)	28
CviAII	CATG	4 cut(s)	32, 103, 383, 518
CviJI	RGCY	8 cut(s)	144, 282, 349, 392, 412, 510, 549, 588
CviKI_1	RGCY	8 cut(s)	144, 282, 349, 392, 412, 510, 549, 588
DpnI	GATC	5 cut(s)	21, 50, 150, 237, 458
DpnII	GATC	5 cut(s)	19, 48, 148, 235, 456
DraI	TTTAAA	1 cut(s)	246
Eam1104I	CTCTTC	1 cut(s)	61
EarI	CTCTTC	1 cut(s)	61
Eco147I	AGGCCT	1 cut(s)	549
Eco47I	GGWCC	1 cut(s)	28
Eco57I	CTGAAG	2 cut(s)	240, 348
EcoRII	CCWGG	1 cut(s)	583
Esp3I	CGTCTC	1 cut(s)	173
FaeI	CATG	4 cut(s)	35, 106, 386, 521
FalI	AAGNNNNNCTT	2 cut(s)	129, 161
FatI	CATG	4 cut(s)	31, 102, 382, 517
FblI	GTMKAC	1 cut(s)	438
Fnu4HI	GCNGC	3 cut(s)	390, 511, 609
FokI	GGATG	2 cut(s)	119, 342
Fsp4HI	GCNGC	3 cut(s)	390, 511, 609
GlaI	GCGC	1 cut(s)	361
GluI	GCNGC	3 cut(s)	390, 511, 609
HaeIII	GGCC	1 cut(s)	549
HhaI	GCGC	1 cut(s)	362
Hin1II	CATG	4 cut(s)	35, 106, 386, 521
Hin6I	GCGC	1 cut(s)	360
HinP1I	GCGC	1 cut(s)	360
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	3 cut(s)	80, 92, 270
HphI	GGTGA	2 cut(s)	55, 83
Hpy166II	GTNNAC	1 cut(s)	439
Hpy188I	TCNGA	2 cut(s)	262, 367
Hpy188III	TCNNGA	2 cut(s)	450, 599
Hpy8I	GTNNAC	1 cut(s)	439
HpyAV	CCTTC	1 cut(s)	560
HpyCH4IV	ACGT	1 cut(s)	166
HpyCH4V	TGCA	7 cut(s)	56, 123, 296, 389, 558, 611, 623
HpyF10VI	GCNNNNNNNGC	2 cut(s)	555, 614
HpySE526I	ACGT	1 cut(s)	166
Hsp92II	CATG	4 cut(s)	35, 106, 386, 521
HspAI	GCGC	1 cut(s)	360
Kzo9I	GATC	5 cut(s)	19, 48, 148, 235, 456
LpnPI	CCDG	9 cut(s)	177, 211, 331, 366, 438, 474, 570, 578, 597
Lsp1109I	GCAGC	3 cut(s)	401, 497, 595
LweI	GCATC	2 cut(s)	595, 620
MaeII	ACGT	1 cut(s)	166
MalI	GATC	5 cut(s)	21, 50, 150, 237, 458
MboI	GATC	5 cut(s)	19, 48, 148, 235, 456
MboII	GAAGA	5 cut(s)	58, 78, 233, 380, 614
MfeI	CAATTG	1 cut(s)	618
MflI	RGATCY	1 cut(s)	48
MluCI	AATT	3 cut(s)	493, 562, 618
MlyI	GAGTC	2 cut(s)	89, 101
MmeI	TCCRAC	2 cut(s)	6, 43
MnlI	CCTC	2 cut(s)	62, 411
MseI	TTAA	3 cut(s)	245, 315, 500
MspR9I	CCNGG	1 cut(s)	585
MunI	CAATTG	1 cut(s)	618
Mva1269I	GAATGC	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	585
MvnI	CGCG	1 cut(s)	600
MwoI	GCNNNNNNNGC	2 cut(s)	555, 614
NdeII	GATC	5 cut(s)	19, 48, 148, 235, 456
NlaIII	CATG	4 cut(s)	35, 106, 386, 521
NruI	TCGCGA	1 cut(s)	600
NspI	RCATGY	1 cut(s)	386
NspV	TTCGAA	1 cut(s)	10
PceI	AGGCCT	1 cut(s)	549
PciI	ACATGT	1 cut(s)	382
PctI	GAATGC	1 cut(s)	296
PfeI	GAWTC	1 cut(s)	270
PflMI	CCANNNNNTGG	1 cut(s)	523
PkrI	GCNGC	3 cut(s)	391, 512, 610
PleI	GAGTC	2 cut(s)	88, 100
PpsI	GAGTC	2 cut(s)	88, 100
PscI	ACATGT	1 cut(s)	382
PsiI	TTATAA	1 cut(s)	201
Psp6I	CCWGG	1 cut(s)	583
PspGI	CCWGG	1 cut(s)	583
PspPI	GGNCC	1 cut(s)	28
PsuI	RGATCY	1 cut(s)	48
RruI	TCGCGA	1 cut(s)	600
SaqAI	TTAA	3 cut(s)	245, 315, 500
SatI	GCNGC	3 cut(s)	390, 511, 609
Sau3AI	GATC	5 cut(s)	19, 48, 148, 235, 456
Sau96I	GGNCC	1 cut(s)	28
SchI	GAGTC	2 cut(s)	89, 101
ScrFI	CCNGG	1 cut(s)	585
SetI	ASST	7 cut(s)	73, 169, 284, 355, 394, 414, 512
SfaNI	GCATC	2 cut(s)	595, 620
SfuI	TTCGAA	1 cut(s)	10
SinI	GGWCC	1 cut(s)	28
Sse9I	AATT	3 cut(s)	493, 562, 618
SseBI	AGGCCT	1 cut(s)	549
StuI	AGGCCT	1 cut(s)	549
StyD4I	CCNGG	1 cut(s)	583
TaiI	ACGT	1 cut(s)	169
TaqI	TCGA	2 cut(s)	10, 268
TasI	AATT	3 cut(s)	493, 562, 618
TfiI	GAWTC	1 cut(s)	270
Tru1I	TTAA	3 cut(s)	245, 315, 500
Tru9I	TTAA	3 cut(s)	245, 315, 500
TscAI	CASTG	3 cut(s)	298, 381, 560
TseI	GCWGC	3 cut(s)	389, 510, 608
TspDTI	ATGAA	1 cut(s)	289
TspRI	CASTG	3 cut(s)	298, 381, 560
Van91I	CCANNNNNTGG	1 cut(s)	523
VpaK11BI	GGWCC	1 cut(s)	28
XapI	RAATTY	2 cut(s)	493, 562
XceI	RCATGY	1 cut(s)	386
XmiI	GTMKAC	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.