Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006396

Physical Location & Seq

Genomic Coordinates Forward (+)

21506811 .. 21508126

Gene Structure 1316 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG139700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ATGGAGTCAATGCTCATGGATGTTCCTTTTGTCTGCAAGTCGTGGCATAAAGCAAGCCTTGATCCTAAATGTTGGGAACGTCTCATTTTTCCCATCATTTCTACTAGTCTTTATAATACTGATGTTGAAACTGAAGACTGGACTTGTGATCCCTTTTTAAAAAGATTTGTTTCTGAATATCGAATCAATAAGAGCTTCTCCATCACTGCATTCATAAAGTTTATGGTCAATCGTAGCAAAGGATGTGCTAATGAAATCAGGCTACCTGTGTGCGCTTCAGAAGAAGCGCTGAAACATGTTGCAGCTTCGTGTCCTCGCCTAAAGAATTTCTCTTTGCCTGCTGATATGGTCTACTATAAATCAAGAATGATCCCTGATATGATTGGCAAGTGGAAAGATTTGGAGAATTTGTTAATGGGAAGCTGCTACCATGATATGGAGAAAATCATTTCACAAATAGGCCTTCACTGTAAGAATTTCTATTTCTTACGTATTCCTGATTGTCTGGTTTGTGAAGATGCAGCATCGGCAATTGCAAAGTTGCCTAATCTTAAGCACATATTCATGAAGAACACAAAGATTGAACGGGTTAATTTTGTTAAATTACCGAAGGGCTGCAAAAATCTTGTGTCATTGGATGCCAGAAATTGTCTTGGTTTCGATGCAGGTGATGAGGAAATATCAGAACTTTCTTCTCACATCAGTGATTTCAAATGCCATGGTTCTAGAGTTTTTGATCGCCATTCTCAGGAGGGAAAATATGTTTGGTTTCATGATTTTGTGTACGATGGATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

265

Amino Acids

30.65

Weight (kDa)

7.51

Isoelectric Point (pI)

42.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33270
prunus_persica	Prupe.1G157900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0265521 RchiOBHm_Chr6g0265531
rosa_laevigata	RLG00000014182
rosa_multiflora	Rmu_co8123530.1_g000001 Rmu_co8387705.1_g000001 Rmu_sc0000217.1_g000007 Rmu_sc0000217.1_g000009 Rmu_sc0006004.1_g000006
rosa_roxburghii	Rroxscaffold_175G00432420 Rroxscaffold_175G00432440 Rroxscaffold_7G00202620 Rroxscaffold_7G00202640
rosa_rugosa	Rorug06G0017300
rosa_samantha	Rh6AG139500 Rh6AG139700 Rh6BG139100 Rh6BG139200 Rh6BG139600 Rh6CG136500 Rh6CG136600 Rh6CG136700 Rh6DG122700 Rh6DG123000
rosa_wichuraiana	Rw6G012010 Rw6G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	114
AarI	CACCTGC	1 cut(s)	656
Acc36I	ACCTGC	1 cut(s)	656
AccB7I	CCANNNNNTGG	1 cut(s)	436
AccI	GTMKAC	1 cut(s)	351
AclWI	GGATC	3 cut(s)	56, 143, 364
AcsI	RAATTY	3 cut(s)	325, 406, 475
AcuI	CTGAAG	2 cut(s)	153, 261
AfaI	GTAC	1 cut(s)	785
AfeI	AGCGCT	1 cut(s)	288
AfiI	CCNNNNNNNGG	2 cut(s)	436, 748
AflII	CTTAAG	1 cut(s)	551
AflIII	ACRYGT	1 cut(s)	295
AgsI	TTSAA	3 cut(s)	128, 584, 712
AhlI	ACTAGT	1 cut(s)	104
AjuI	GAANNNNNNNTTGG	2 cut(s)	748, 780
AleI	CACNNNNGTG	1 cut(s)	702
AluBI	AGCT	3 cut(s)	195, 305, 423
AluI	AGCT	3 cut(s)	195, 305, 423
Alw26I	GTCTC	1 cut(s)	86
AlwI	GGATC	3 cut(s)	56, 143, 364
Aor51HI	AGCGCT	1 cut(s)	288
AoxI	GGCC	1 cut(s)	460
ApeKI	GCWGC	4 cut(s)	302, 423, 521, 615
ApoI	RAATTY	3 cut(s)	325, 406, 475
AspLEI	GCGC	2 cut(s)	275, 289
AsuHPI	GGTGA	1 cut(s)	680
BbsI	GAAGAC	1 cut(s)	141
BbvI	GCAGC	4 cut(s)	314, 410, 533, 602
BccI	CCATC	3 cut(s)	101, 209, 782
BciVI	GTATCC	1 cut(s)	785
BcoDI	GTCTC	1 cut(s)	86
BcuI	ACTAGT	1 cut(s)	104
BfaI	CTAG	2 cut(s)	105, 726
BfoI	RGCGCY	1 cut(s)	290
BfrI	CTTAAG	1 cut(s)	551
BfuAI	ACCTGC	1 cut(s)	656
BfuI	GTATCC	1 cut(s)	785
BisI	GCNGC	4 cut(s)	303, 424, 522, 616
BlsI	GCNGC	4 cut(s)	304, 425, 523, 617
BmsI	GCATC	4 cut(s)	508, 533, 628, 652
BpiI	GAAGAC	1 cut(s)	141
BsaAI	YACGTR	1 cut(s)	491
BsaJI	CCNNGG	1 cut(s)	718
BsaXI	ACNNNNNCTCC	2 cut(s)	395, 425
Bsc4I	CCNNNNNNNGG	2 cut(s)	436, 748
Bse1I	ACTGG	1 cut(s)	143
BseDI	CCNNGG	1 cut(s)	718
BseGI	GGATG	3 cut(s)	25, 248, 643
BseLI	CCNNNNNNNGG	2 cut(s)	436, 748
BseMII	CTCAG	1 cut(s)	761
BseNI	ACTGG	1 cut(s)	143
BseXI	GCAGC	4 cut(s)	314, 410, 533, 602
BshFI	GGCC	1 cut(s)	462
BslI	CCNNNNNNNGG	2 cut(s)	436, 748
BsmAI	GTCTC	1 cut(s)	86
BsmBI	CGTCTC	1 cut(s)	86
BsmI	GAATGC	1 cut(s)	209
BsnI	GGCC	1 cut(s)	462
Bsp143I	GATC	4 cut(s)	61, 148, 369, 736
Bsp19I	CCATGG	1 cut(s)	718
BspANI	GGCC	1 cut(s)	462
BspCNI	CTCAG	1 cut(s)	760
BspHI	TCATGA	2 cut(s)	564, 772
BspMI	ACCTGC	1 cut(s)	656
BspPI	GGATC	3 cut(s)	56, 143, 364
BspTI	CTTAAG	1 cut(s)	551
BsrI	ACTGG	1 cut(s)	143
BssECI	CCNNGG	1 cut(s)	718
BssMI	GATC	4 cut(s)	61, 148, 369, 736
BssT1I	CCWWGG	1 cut(s)	718
Bst4CI	ACNGT	1 cut(s)	470
BstAFI	CTTAAG	1 cut(s)	551
BstBAI	YACGTR	1 cut(s)	491
BstC8I	GCNNGC	2 cut(s)	55, 339
BstDEI	CTNAG	1 cut(s)	747
BstDSI	CCRYGG	1 cut(s)	718
BstF5I	GGATG	3 cut(s)	25, 248, 643
BstH2I	RGCGCY	1 cut(s)	290
BstHHI	GCGC	2 cut(s)	275, 289
BstKTI	GATC	4 cut(s)	64, 151, 372, 739
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	4 cut(s)	61, 148, 369, 736
BstMWI	GCNNNNNNNGC	1 cut(s)	527
BstNSI	RCATGY	1 cut(s)	299
BstSNI	TACGTA	1 cut(s)	491
BstV1I	GCAGC	4 cut(s)	314, 410, 533, 602
BstV2I	GAAGAC	1 cut(s)	141
BsuI	GTATCC	1 cut(s)	785
BsuRI	GGCC	1 cut(s)	462
BtgI	CCRYGG	1 cut(s)	718
BtsCI	GGATG	3 cut(s)	25, 248, 643
BtsI	GCAGTG	1 cut(s)	204
BtsIMutI	CAGTG	3 cut(s)	204, 466, 709
BveI	ACCTGC	1 cut(s)	656
Cac8I	GCNNGC	2 cut(s)	55, 339
CciI	TCATGA	2 cut(s)	564, 772
CfoI	GCGC	2 cut(s)	275, 289
Csp6I	GTAC	1 cut(s)	784
CviAII	CATG	6 cut(s)	16, 296, 431, 565, 719, 773
CviJI	RGCY	7 cut(s)	57, 195, 262, 305, 423, 462, 615
CviKI_1	RGCY	7 cut(s)	57, 195, 262, 305, 423, 462, 615
CviQI	GTAC	1 cut(s)	784
DdeI	CTNAG	1 cut(s)	747
DpnI	GATC	4 cut(s)	63, 150, 371, 738
DpnII	GATC	4 cut(s)	61, 148, 369, 736
DraI	TTTAAA	1 cut(s)	159
Eco105I	TACGTA	1 cut(s)	491
Eco130I	CCWWGG	1 cut(s)	718
Eco147I	AGGCCT	1 cut(s)	462
Eco47III	AGCGCT	1 cut(s)	288
Eco57I	CTGAAG	2 cut(s)	153, 261
EcoT14I	CCWWGG	1 cut(s)	718
ErhI	CCWWGG	1 cut(s)	718
Esp3I	CGTCTC	1 cut(s)	86
FaeI	CATG	6 cut(s)	19, 299, 434, 568, 722, 776
FalI	AAGNNNNNCTT	2 cut(s)	42, 74
FatI	CATG	6 cut(s)	15, 295, 430, 564, 718, 772
FblI	GTMKAC	1 cut(s)	351
Fnu4HI	GCNGC	4 cut(s)	303, 424, 522, 616
FokI	GGATG	3 cut(s)	32, 255, 650
Fsp4HI	GCNGC	4 cut(s)	303, 424, 522, 616
FspBI	CTAG	2 cut(s)	105, 726
GlaI	GCGC	2 cut(s)	274, 288
GluI	GCNGC	4 cut(s)	303, 424, 522, 616
HaeII	RGCGCY	1 cut(s)	290
HaeIII	GGCC	1 cut(s)	462
HhaI	GCGC	2 cut(s)	275, 289
Hin1II	CATG	6 cut(s)	19, 299, 434, 568, 722, 776
Hin6I	GCGC	2 cut(s)	273, 287
HinP1I	GCGC	2 cut(s)	273, 287
HinfI	GANTC	2 cut(s)	5, 183
HphI	GGTGA	1 cut(s)	680
Hpy166II	GTNNAC	2 cut(s)	352, 784
Hpy188I	TCNGA	3 cut(s)	175, 280, 685
Hpy188III	TCNNGA	6 cut(s)	363, 497, 565, 726, 749, 773
Hpy8I	GTNNAC	2 cut(s)	352, 784
HpyAV	CCTTC	2 cut(s)	473, 604
HpyCH4III	ACNGT	1 cut(s)	470
HpyCH4IV	ACGT	2 cut(s)	79, 490
HpyCH4V	TGCA	7 cut(s)	36, 209, 302, 521, 536, 618, 665
HpyF10VI	GCNNNNNNNGC	1 cut(s)	527
HpyF3I	CTNAG	1 cut(s)	747
HpySE526I	ACGT	2 cut(s)	79, 490
Hsp92II	CATG	6 cut(s)	19, 299, 434, 568, 722, 776
HspAI	GCGC	2 cut(s)	273, 287
Kzo9I	GATC	4 cut(s)	61, 148, 369, 736
Lsp1109I	GCAGC	4 cut(s)	314, 410, 533, 602
LweI	GCATC	4 cut(s)	508, 533, 628, 652
MaeI	CTAG	2 cut(s)	105, 726
MaeII	ACGT	2 cut(s)	79, 490
MalI	GATC	4 cut(s)	63, 150, 371, 738
MboI	GATC	4 cut(s)	61, 148, 369, 736
MboII	GAAGA	5 cut(s)	146, 293, 527, 580, 684
MfeI	CAATTG	1 cut(s)	531
MluCI	AATT	7 cut(s)	325, 406, 475, 531, 592, 602, 646
MlyI	GAGTC	1 cut(s)	14
MnlI	CCTC	3 cut(s)	324, 667, 745
MseI	TTAA	5 cut(s)	158, 413, 552, 591, 600
MslI	CAYNNNNRTG	2 cut(s)	563, 702
MspCI	CTTAAG	1 cut(s)	551
MunI	CAATTG	1 cut(s)	531
Mva1269I	GAATGC	1 cut(s)	209
MwoI	GCNNNNNNNGC	1 cut(s)	527
NcoI	CCATGG	1 cut(s)	718
NdeII	GATC	4 cut(s)	61, 148, 369, 736
NlaIII	CATG	6 cut(s)	19, 299, 434, 568, 722, 776
NspI	RCATGY	1 cut(s)	299
OliI	CACNNNNGTG	1 cut(s)	702
PagI	TCATGA	2 cut(s)	564, 772
PaqCI	CACCTGC	1 cut(s)	656
PceI	AGGCCT	1 cut(s)	462
PciI	ACATGT	1 cut(s)	295
PctI	GAATGC	1 cut(s)	209
PfeI	GAWTC	1 cut(s)	183
PflMI	CCANNNNNTGG	1 cut(s)	436
PkrI	GCNGC	4 cut(s)	304, 425, 523, 617
PleI	GAGTC	1 cut(s)	13
PpsI	GAGTC	1 cut(s)	13
Ppu21I	YACGTR	1 cut(s)	491
PscI	ACATGT	1 cut(s)	295
PsiI	TTATAA	1 cut(s)	114
RsaI	GTAC	1 cut(s)	785
RsaNI	GTAC	1 cut(s)	784
RseI	CAYNNNNRTG	2 cut(s)	563, 702
SaqAI	TTAA	5 cut(s)	158, 413, 552, 591, 600
SatI	GCNGC	4 cut(s)	303, 424, 522, 616
Sau3AI	GATC	4 cut(s)	61, 148, 369, 736
SchI	GAGTC	1 cut(s)	14
SetI	ASST	7 cut(s)	82, 197, 268, 307, 425, 493, 670
SfaNI	GCATC	4 cut(s)	508, 533, 628, 652
SmiMI	CAYNNNNRTG	2 cut(s)	563, 702
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
SnaBI	TACGTA	1 cut(s)	491
SpeI	ACTAGT	1 cut(s)	104
Sse9I	AATT	7 cut(s)	325, 406, 475, 531, 592, 602, 646
SseBI	AGGCCT	1 cut(s)	462
SspMI	CTAG	2 cut(s)	105, 726
StuI	AGGCCT	1 cut(s)	462
StyI	CCWWGG	1 cut(s)	718
TaaI	ACNGT	1 cut(s)	470
TaiI	ACGT	2 cut(s)	82, 493
TaqI	TCGA	2 cut(s)	181, 660
TasI	AATT	7 cut(s)	325, 406, 475, 531, 592, 602, 646
TfiI	GAWTC	1 cut(s)	183
Tru1I	TTAA	5 cut(s)	158, 413, 552, 591, 600
Tru9I	TTAA	5 cut(s)	158, 413, 552, 591, 600
TscAI	CASTG	3 cut(s)	211, 473, 709
TseI	GCWGC	4 cut(s)	302, 423, 521, 615
TspDTI	ATGAA	5 cut(s)	202, 267, 553, 581, 761
TspRI	CASTG	3 cut(s)	211, 473, 709
Van91I	CCANNNNNTGG	1 cut(s)	436
Vha464I	CTTAAG	1 cut(s)	551
XapI	RAATTY	3 cut(s)	325, 406, 475
XbaI	TCTAGA	1 cut(s)	725
XceI	RCATGY	1 cut(s)	299
XmiI	GTMKAC	1 cut(s)	351
XspI	CTAG	2 cut(s)	105, 726

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.