Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006396

Physical Location & Seq

Genomic Coordinates Forward (+)

17379263 .. 17379892

Gene Structure 630 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG136700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGTGAATCGTAGCAAAGGATGTGCTACTGAAATCAGGCTACCCGTGTGCGCTTCAGAAGAAGCACTGAAACATGTTGCAGCTTCGTGTCCTCGCCTAAAGATTTTGTCTTTGCCAGCTGATGTAGTCTACTATAAATCAAGAATGATCCCTGATATGATTGGCAAGTGGAAAGATTTGGAGAATTTGTTAATGGGAAGCTACTACCATGATATGGAGAAAATCATTTCACAAATAGGCCTTCACTGCAAGAATTTCTATTTTTTACATGTTCCTGACTGTCTGGTTCCCAAAGATGCTGCATCAGCAAGTGCAAAGTTGCCTAATCTTAAGCACATAATCATGAGGAACGCAAAGATCGAACGGGTTAATTTTGTTAAATTACTGAAGGGCTGCAAAAATCTTGTGTCATTGGATGCCAGAAATTGTCTTGGTTTCAATGTAGGTGATAAGGAAATATCAGAACTTGCTTCTCATATCAGTGATTTCAATTGCCAAGGTTCTAGAGTTTTTTATCGCCGTTCTGAGGAGGGAAAATATGTTTTGGTTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

184

Amino Acids

20.79

Weight (kDa)

9.17

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33270
prunus_persica	Prupe.1G157900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0265521 RchiOBHm_Chr6g0265531
rosa_laevigata	RLG00000014182
rosa_multiflora	Rmu_co8123530.1_g000001 Rmu_co8387705.1_g000001 Rmu_sc0000217.1_g000007 Rmu_sc0000217.1_g000009 Rmu_sc0006004.1_g000006
rosa_roxburghii	Rroxscaffold_175G00432420 Rroxscaffold_175G00432440 Rroxscaffold_7G00202620 Rroxscaffold_7G00202640
rosa_rugosa	Rorug06G0017300
rosa_samantha	Rh6AG139500 Rh6AG139700 Rh6BG139100 Rh6BG139200 Rh6BG139600 Rh6CG136500 Rh6CG136600 Rh6CG136700 Rh6DG122700 Rh6DG123000
rosa_wichuraiana	Rw6G012010 Rw6G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	214
AccI	GTMKAC	1 cut(s)	129
AclWI	GGATC	1 cut(s)	142
AcsI	RAATTY	2 cut(s)	184, 253
AcuI	CTGAAG	2 cut(s)	39, 407
AfiI	CCNNNNNNNGG	2 cut(s)	214, 526
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	2 cut(s)	73, 268
AgsI	TTSAA	2 cut(s)	439, 490
AluBI	AGCT	3 cut(s)	83, 119, 201
AluI	AGCT	3 cut(s)	83, 119, 201
AlwI	GGATC	1 cut(s)	142
AoxI	GGCC	1 cut(s)	238
ApeKI	GCWGC	3 cut(s)	80, 299, 393
ApoI	RAATTY	2 cut(s)	184, 253
AspLEI	GCGC	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	16, 458
BbvI	GCAGC	3 cut(s)	92, 286, 380
BceAI	ACGGC	1 cut(s)	504
BfaI	CTAG	1 cut(s)	504
BfrI	CTTAAG	1 cut(s)	329
BisI	GCNGC	3 cut(s)	81, 300, 394
BlsI	GCNGC	3 cut(s)	82, 301, 395
BmiI	GGNNCC	1 cut(s)	288
BmsI	GCATC	3 cut(s)	286, 311, 406
BsaJI	CCNNGG	1 cut(s)	496
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 526
BseDI	CCNNGG	1 cut(s)	496
BseGI	GGATG	2 cut(s)	26, 421
BseLI	CCNNNNNNNGG	2 cut(s)	214, 526
BseMII	CTCAG	1 cut(s)	516
BseRI	GAGGAG	1 cut(s)	542
BseXI	GCAGC	3 cut(s)	92, 286, 380
BshFI	GGCC	1 cut(s)	240
BslI	CCNNNNNNNGG	2 cut(s)	214, 526
BsnI	GGCC	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	147, 357
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	1 cut(s)	517
BspHI	TCATGA	1 cut(s)	342
BspLI	GGNNCC	1 cut(s)	288
BspPI	GGATC	1 cut(s)	142
BspTI	CTTAAG	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	496
BssMI	GATC	2 cut(s)	147, 357
BssT1I	CCWWGG	1 cut(s)	496
Bst4CI	ACNGT	1 cut(s)	281
BstAFI	CTTAAG	1 cut(s)	329
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	525
BstF5I	GGATG	2 cut(s)	26, 421
BstHHI	GCGC	1 cut(s)	53
BstKTI	GATC	2 cut(s)	150, 360
BstMBI	GATC	2 cut(s)	147, 357
BstMWI	GCNNNNNNNGC	2 cut(s)	246, 305
BstNSI	RCATGY	2 cut(s)	77, 272
BstV1I	GCAGC	3 cut(s)	92, 286, 380
BsuRI	GGCC	1 cut(s)	240
BtsCI	GGATG	2 cut(s)	26, 421
BtsI	GCAGTG	1 cut(s)	244
BtsIMutI	CAGTG	3 cut(s)	65, 244, 487
Cac8I	GCNNGC	1 cut(s)	117
CciI	TCATGA	1 cut(s)	342
CfoI	GCGC	1 cut(s)	53
CviAII	CATG	4 cut(s)	74, 209, 269, 343
CviJI	RGCY	6 cut(s)	40, 83, 119, 201, 240, 393
CviKI_1	RGCY	6 cut(s)	40, 83, 119, 201, 240, 393
DdeI	CTNAG	1 cut(s)	525
DpnI	GATC	2 cut(s)	149, 359
DpnII	GATC	2 cut(s)	147, 357
Eco130I	CCWWGG	1 cut(s)	496
Eco147I	AGGCCT	1 cut(s)	240
Eco57I	CTGAAG	2 cut(s)	39, 407
EcoT14I	CCWWGG	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	4 cut(s)	77, 212, 272, 346
FatI	CATG	4 cut(s)	73, 208, 268, 342
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	3 cut(s)	81, 300, 394
FokI	GGATG	2 cut(s)	33, 428
Fsp4HI	GCNGC	3 cut(s)	81, 300, 394
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	1 cut(s)	52
GluI	GCNGC	3 cut(s)	81, 300, 394
HaeIII	GGCC	1 cut(s)	240
HhaI	GCGC	1 cut(s)	53
Hin1II	CATG	4 cut(s)	77, 212, 272, 346
Hin6I	GCGC	1 cut(s)	51
HinP1I	GCGC	1 cut(s)	51
HinfI	GANTC	1 cut(s)	7
HphI	GGTGA	2 cut(s)	16, 458
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	3 cut(s)	58, 463, 526
Hpy188III	TCNNGA	4 cut(s)	141, 275, 343, 504
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	2 cut(s)	251, 382
HpyCH4III	ACNGT	1 cut(s)	281
HpyCH4V	TGCA	5 cut(s)	80, 249, 302, 314, 396
HpyF10VI	GCNNNNNNNGC	2 cut(s)	246, 305
HpyF3I	CTNAG	1 cut(s)	525
Hsp92II	CATG	4 cut(s)	77, 212, 272, 346
HspAI	GCGC	1 cut(s)	51
Kzo9I	GATC	2 cut(s)	147, 357
LpnPI	CCDG	6 cut(s)	22, 129, 165, 269, 288, 433
Lsp1109I	GCAGC	3 cut(s)	92, 286, 380
LweI	GCATC	3 cut(s)	286, 311, 406
MaeI	CTAG	1 cut(s)	504
MalI	GATC	2 cut(s)	149, 359
MboI	GATC	2 cut(s)	147, 357
MboII	GAAGA	1 cut(s)	71
MfeI	CAATTG	1 cut(s)	490
MluCI	AATT	6 cut(s)	184, 253, 370, 380, 424, 490
MnlI	CCTC	4 cut(s)	102, 339, 520, 523
MseI	TTAA	5 cut(s)	191, 330, 369, 378, 549
MslI	CAYNNNNRTG	2 cut(s)	341, 480
MspA1I	CMGCKG	1 cut(s)	119
MspCI	CTTAAG	1 cut(s)	329
MunI	CAATTG	1 cut(s)	490
MwoI	GCNNNNNNNGC	2 cut(s)	246, 305
NdeII	GATC	2 cut(s)	147, 357
NlaIII	CATG	4 cut(s)	77, 212, 272, 346
NlaIV	GGNNCC	1 cut(s)	288
NspI	RCATGY	2 cut(s)	77, 272
PagI	TCATGA	1 cut(s)	342
PceI	AGGCCT	1 cut(s)	240
PciI	ACATGT	2 cut(s)	73, 268
PcsI	WCGNNNNNNNCGW	1 cut(s)	357
PfeI	GAWTC	1 cut(s)	7
PflMI	CCANNNNNTGG	1 cut(s)	214
PkrI	GCNGC	3 cut(s)	82, 301, 395
PscI	ACATGT	2 cut(s)	73, 268
PspN4I	GGNNCC	1 cut(s)	288
PvuII	CAGCTG	1 cut(s)	119
RseI	CAYNNNNRTG	2 cut(s)	341, 480
SaqAI	TTAA	5 cut(s)	191, 330, 369, 378, 549
SatI	GCNGC	3 cut(s)	81, 300, 394
Sau3AI	GATC	2 cut(s)	147, 357
SetI	ASST	5 cut(s)	85, 121, 203, 448, 502
SfaNI	GCATC	3 cut(s)	286, 311, 406
SmiMI	CAYNNNNRTG	2 cut(s)	341, 480
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
Sse9I	AATT	6 cut(s)	184, 253, 370, 380, 424, 490
SseBI	AGGCCT	1 cut(s)	240
SspMI	CTAG	1 cut(s)	504
StuI	AGGCCT	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	1 cut(s)	281
TaqI	TCGA	1 cut(s)	360
TasI	AATT	6 cut(s)	184, 253, 370, 380, 424, 490
TfiI	GAWTC	1 cut(s)	7
Tru1I	TTAA	5 cut(s)	191, 330, 369, 378, 549
Tru9I	TTAA	5 cut(s)	191, 330, 369, 378, 549
TscAI	CASTG	3 cut(s)	72, 251, 487
TseI	GCWGC	3 cut(s)	80, 299, 393
TspRI	CASTG	3 cut(s)	72, 251, 487
Van91I	CCANNNNNTGG	1 cut(s)	214
Vha464I	CTTAAG	1 cut(s)	329
XapI	RAATTY	2 cut(s)	184, 253
XbaI	TCTAGA	1 cut(s)	503
XceI	RCATGY	2 cut(s)	77, 272
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.