Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0006396

Physical Location & Seq

Genomic Coordinates Forward (+)

12539943 .. 12541679

Gene Structure 1737 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G157900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 681 bp

ATGGATCAAAGAAGATGGGAAGAGTTCAACACTGACTGTTTGACGAATATTTTTGGAAGAGTTGGTATGGAGTCACTGCTTTTTGATGTGCCTTTTGTATGCAAGTCGTGGTACAAAGCAAGCCTCGATCCTTGTTGCTGGCAACGTCTCATATTTCCCAACGTCTCCTTTTTTGGAAGATTTGTCAATGAATATCGAATTGACGCGTGGAAGTTTTCGACTAGGGCGTTTATTAAGTTTGTCATCGGTCGTAGCAAAGGACAAGCTACTGTTCTCAGCCTACCTCCATCTGCTTCGGAAACAGACTTGAAATATGTTTCGGATGTGTGTGGTGATCTCAAGGTTCTGGCATTTCATGGGTACAAACCACATGTAATCCCAAAGCTGATTGGTAAGTGGAAACATTTGGAGTGGTTAATGTTGGAAAGCGGCGATGATTTCGAAGAAATCCTCTCACAGATCAGCGTTCACTGCAAGGATTTTTGTGGCTTATGTGTGTCTAATGATGTTTTTTTTACTGGAGAGGGAATAGCAATCGTTAACTTCCTGCCTAAGATTAAACAGTTGATCTTTAGGAGGGTGGAAATTGGTCGAGATGATCTTATGGCGTTACTGCTGCGCTGGAAAAAGCTTCTGCTGCTGGAAGGCAGTGATTGTGTAGGTTTTAGTCCGGATGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

227

Amino Acids

25.99

Weight (kDa)

6.88

Isoelectric Point (pI)

33.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33270
prunus_persica	Prupe.1G157900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0265521 RchiOBHm_Chr6g0265531
rosa_laevigata	RLG00000014182
rosa_multiflora	Rmu_co8123530.1_g000001 Rmu_co8387705.1_g000001 Rmu_sc0000217.1_g000007 Rmu_sc0000217.1_g000009 Rmu_sc0006004.1_g000006
rosa_roxburghii	Rroxscaffold_175G00432420 Rroxscaffold_175G00432440 Rroxscaffold_7G00202620 Rroxscaffold_7G00202640
rosa_rugosa	Rorug06G0017300
rosa_samantha	Rh6AG139500 Rh6AG139700 Rh6BG139100 Rh6BG139200 Rh6BG139600 Rh6CG136500 Rh6CG136600 Rh6CG136700 Rh6DG122700 Rh6DG123000
rosa_wichuraiana	Rw6G012010 Rw6G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	206
AccIII	TCCGGA	1 cut(s)	670
AciI	CCGC	1 cut(s)	429
AclWI	GGATC	2 cut(s)	12, 122
AfaI	GTAC	2 cut(s)	113, 362
AflIII	ACRYGT	2 cut(s)	204, 370
AgsI	TTSAA	2 cut(s)	28, 310
AluBI	AGCT	3 cut(s)	266, 385, 631
AluI	AGCT	3 cut(s)	266, 385, 631
Alw26I	GTCTC	2 cut(s)	152, 169
AlwI	GGATC	2 cut(s)	12, 122
Aor13HI	TCCGGA	1 cut(s)	670
ApeKI	GCWGC	2 cut(s)	616, 637
AspLEI	GCGC	1 cut(s)	621
AsuHPI	GGTGA	1 cut(s)	344
AsuII	TTCGAA	1 cut(s)	441
BbvI	GCAGC	2 cut(s)	603, 624
BccI	CCATC	2 cut(s)	9, 295
BcoDI	GTCTC	2 cut(s)	152, 169
BfaI	CTAG	1 cut(s)	222
BisI	GCNGC	3 cut(s)	430, 617, 638
BlsI	GCNGC	3 cut(s)	431, 618, 639
BmsI	GCATC	1 cut(s)	664
BpmI	CTGGAG	1 cut(s)	540
Bpu14I	TTCGAA	1 cut(s)	441
BpuEI	CTTGAG	1 cut(s)	323
BsaWI	WCCGGW	1 cut(s)	670
Bse1I	ACTGG	1 cut(s)	523
BseAI	TCCGGA	1 cut(s)	670
BseGI	GGATG	2 cut(s)	328, 679
BseMII	CTCAG	1 cut(s)	289
BseNI	ACTGG	1 cut(s)	523
BseXI	GCAGC	2 cut(s)	603, 624
Bsh1236I	CGCG	1 cut(s)	206
Bsh1285I	CGRYCG	1 cut(s)	250
BsiEI	CGRYCG	1 cut(s)	250
BsiSI	CCGG	1 cut(s)	671
BsmAI	GTCTC	2 cut(s)	152, 169
BsmBI	CGTCTC	2 cut(s)	152, 169
Bsp119I	TTCGAA	1 cut(s)	441
Bsp13I	TCCGGA	1 cut(s)	670
Bsp143I	GATC	6 cut(s)	4, 127, 334, 459, 567, 598
BspACI	CCGC	1 cut(s)	429
BspCNI	CTCAG	1 cut(s)	288
BspEI	TCCGGA	1 cut(s)	670
BspFNI	CGCG	1 cut(s)	206
BspPI	GGATC	2 cut(s)	12, 122
BspT104I	TTCGAA	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	523
BssMI	GATC	6 cut(s)	4, 127, 334, 459, 567, 598
Bst4CI	ACNGT	3 cut(s)	38, 271, 564
Bst6I	CTCTTC	2 cut(s)	15, 52
BstBI	TTCGAA	1 cut(s)	441
BstC8I	GCNNGC	2 cut(s)	121, 140
BstDEI	CTNAG	3 cut(s)	275, 552, 678
BstF5I	GGATG	2 cut(s)	328, 679
BstFNI	CGCG	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	621
BstKTI	GATC	6 cut(s)	7, 130, 337, 462, 570, 601
BstMAI	GTCTC	2 cut(s)	152, 169
BstMBI	GATC	6 cut(s)	4, 127, 334, 459, 567, 598
BstMCI	CGRYCG	1 cut(s)	250
BstMWI	GCNNNNNNNGC	2 cut(s)	471, 637
BstNSI	RCATGY	1 cut(s)	374
BstUI	CGCG	1 cut(s)	206
BstV1I	GCAGC	2 cut(s)	603, 624
BtgZI	GCGATG	1 cut(s)	447
BtsCI	GGATG	2 cut(s)	328, 679
BtsI	GCAGTG	3 cut(s)	74, 469, 655
BtsIMutI	CAGTG	4 cut(s)	30, 74, 469, 655
Cac8I	GCNNGC	2 cut(s)	121, 140
CfoI	GCGC	1 cut(s)	621
CseI	GACGC	1 cut(s)	212
Csp6I	GTAC	2 cut(s)	112, 361
CviAII	CATG	2 cut(s)	356, 371
CviJI	RGCY	6 cut(s)	123, 266, 279, 385, 489, 631
CviKI_1	RGCY	6 cut(s)	123, 266, 279, 385, 489, 631
CviQI	GTAC	2 cut(s)	112, 361
DdeI	CTNAG	3 cut(s)	275, 552, 678
DpnI	GATC	6 cut(s)	6, 129, 336, 461, 569, 600
DpnII	GATC	6 cut(s)	4, 127, 334, 459, 567, 598
Eam1104I	CTCTTC	2 cut(s)	15, 52
EarI	CTCTTC	2 cut(s)	15, 52
Esp3I	CGTCTC	2 cut(s)	152, 169
FaeI	CATG	2 cut(s)	359, 374
FaiI	YATR	8 cut(s)	68, 100, 152, 315, 357, 372, 493, 605
FatI	CATG	2 cut(s)	355, 370
Fnu4HI	GCNGC	3 cut(s)	430, 617, 638
FokI	GGATG	1 cut(s)	335
Fsp4HI	GCNGC	3 cut(s)	430, 617, 638
FspBI	CTAG	1 cut(s)	222
GlaI	GCGC	1 cut(s)	620
GluI	GCNGC	3 cut(s)	430, 617, 638
GsuI	CTGGAG	1 cut(s)	540
HapII	CCGG	1 cut(s)	671
HgaI	GACGC	1 cut(s)	212
HhaI	GCGC	1 cut(s)	621
Hin1II	CATG	2 cut(s)	359, 374
Hin6I	GCGC	1 cut(s)	619
HinP1I	GCGC	1 cut(s)	619
HincII	GTYRAC	1 cut(s)	541
HindII	GTYRAC	1 cut(s)	541
HindIII	AAGCTT	1 cut(s)	629
HinfI	GANTC	1 cut(s)	71
HpaI	GTTAAC	1 cut(s)	541
HpaII	CCGG	1 cut(s)	671
HphI	GGTGA	1 cut(s)	344
Hpy166II	GTNNAC	2 cut(s)	469, 541
Hpy188I	TCNGA	2 cut(s)	298, 322
Hpy188III	TCNNGA	2 cut(s)	593, 671
Hpy8I	GTNNAC	2 cut(s)	469, 541
HpyAV	CCTTC	1 cut(s)	638
HpyCH4III	ACNGT	3 cut(s)	38, 271, 564
HpyCH4IV	ACGT	2 cut(s)	145, 162
HpyCH4V	TGCA	2 cut(s)	102, 474
HpyF10VI	GCNNNNNNNGC	2 cut(s)	471, 637
HpyF3I	CTNAG	3 cut(s)	275, 552, 678
HpySE526I	ACGT	2 cut(s)	145, 162
Hsp92II	CATG	2 cut(s)	359, 374
HspAI	GCGC	1 cut(s)	619
Kpn2I	TCCGGA	1 cut(s)	670
KspAI	GTTAAC	1 cut(s)	541
Kzo9I	GATC	6 cut(s)	4, 127, 334, 459, 567, 598
LpnPI	CCDG	6 cut(s)	124, 332, 504, 560, 607, 626
Lsp1109I	GCAGC	2 cut(s)	603, 624
LweI	GCATC	1 cut(s)	664
MaeI	CTAG	1 cut(s)	222
MaeII	ACGT	2 cut(s)	145, 162
MaeIII	GTNAC	2 cut(s)	72, 609
MalI	GATC	6 cut(s)	6, 129, 336, 461, 569, 600
MboI	GATC	6 cut(s)	4, 127, 334, 459, 567, 598
MboII	GAAGA	5 cut(s)	24, 32, 69, 189, 455
MluCI	AATT	2 cut(s)	198, 585
MluI	ACGCGT	1 cut(s)	204
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	1 cut(s)	402
MnlI	CCTC	5 cut(s)	134, 294, 461, 517, 570
MroI	TCCGGA	1 cut(s)	670
MseI	TTAA	4 cut(s)	234, 416, 540, 558
MspI	CCGG	1 cut(s)	671
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	2 cut(s)	471, 637
NdeII	GATC	6 cut(s)	4, 127, 334, 459, 567, 598
NlaIII	CATG	2 cut(s)	359, 374
NmuCI	GTSAC	1 cut(s)	72
NspI	RCATGY	1 cut(s)	374
NspV	TTCGAA	1 cut(s)	441
PciI	ACATGT	1 cut(s)	370
PcsI	WCGNNNNNNNCGW	1 cut(s)	224
PkrI	GCNGC	3 cut(s)	431, 618, 639
PleI	GAGTC	1 cut(s)	79
PpsI	GAGTC	1 cut(s)	79
PscI	ACATGT	1 cut(s)	370
RsaI	GTAC	2 cut(s)	113, 362
RsaNI	GTAC	2 cut(s)	112, 361
SaqAI	TTAA	4 cut(s)	234, 416, 540, 558
SatI	GCNGC	3 cut(s)	430, 617, 638
Sau3AI	GATC	6 cut(s)	4, 127, 334, 459, 567, 598
SchI	GAGTC	1 cut(s)	80
SetI	ASST	8 cut(s)	148, 165, 268, 286, 345, 387, 633, 664
SfaNI	GCATC	1 cut(s)	664
SfuI	TTCGAA	1 cut(s)	441
SmlI	CTYRAG	1 cut(s)	338
SmoI	CTYRAG	1 cut(s)	338
Sse9I	AATT	2 cut(s)	198, 585
SsiI	CCGC	1 cut(s)	429
SspI	AATATT	1 cut(s)	49
SspMI	CTAG	1 cut(s)	222
TaaI	ACNGT	3 cut(s)	38, 271, 564
TaiI	ACGT	2 cut(s)	148, 165
TaqI	TCGA	5 cut(s)	126, 196, 218, 441, 592
TaqII	GACCGA	1 cut(s)	236
TasI	AATT	2 cut(s)	198, 585
TauI	GCSGC	1 cut(s)	432
Tru1I	TTAA	4 cut(s)	234, 416, 540, 558
Tru9I	TTAA	4 cut(s)	234, 416, 540, 558
TscAI	CASTG	4 cut(s)	37, 81, 476, 655
TseFI	GTSAC	1 cut(s)	72
TseI	GCWGC	2 cut(s)	616, 637
Tsp45I	GTSAC	1 cut(s)	72
TspDTI	ATGAA	2 cut(s)	204, 344
TspRI	CASTG	4 cut(s)	37, 81, 476, 655
XceI	RCATGY	1 cut(s)	374
XspI	CTAG	1 cut(s)	222

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.