Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0006396

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG122700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGCTCGAGAAGGCATTTTGGACTGGCTGCAACAGTTCCATAGAGGAACTTCTGCAGTTCATGGATCAGCGAAAATGGGATCAGTTGGACTATGATTGTTTGGTGAATATCTTTGGAAAAGTCGGAAGAGGTGGTATGGAGTCACTGCTCATGGATGTTCCTTTTGTCTGCAAGTCATGGCATAAAGCAAGCCTTGATCCTAAATGTTGGGAAAGTCTCATTTTTCCCATCATTTTTACTAGTCTTTATAATTCTGATGTTGAAACTGAAGACTGGACTTTTGATTCCTTTTTAAAAAGATTTGTTTTTGAATACCGAATCAACAAGAGCTTCTCCATCACTGCATTCATAAAGTTTATGGTCAATCGTAGCAAAGGATGTGCTACTGAAATCAGGCTACCTGTGTGTGCTTCACAAGAAGCACTGAAACATGTTGCAGCTTCGTGTCCTCGCCTAAAGCTTTTGTCTTTGCCTGCTGATGTAGTCTACTATAAATCAAGAATGATCCCTGATATGATTGGCAAGTGGAAAGATTTGGAGAATTTGTTAATGGGAAACTGCTACCATGATATGGAGAAAATCATTTCACAAATAGGCCTTCTCTGCAAGAATTTCTATTTTTTACATATTCCTGACTGTCTGGTTTGCGAAGATGCTGCATCGGCAATTGCAAAGTTGCCTAATCTTAAGCACATATTCATGAAGAACACAAAGATCGAACGGGTTAATTTTGTTAAATTACTGAAGGGCTGCAAAAATCTTGTGTCATTGGATGCCAGAAATTGTCTTGGTTTCGATGCAGGTGATAAGGAAATATCAGAACTTGCTTCTCATATCAGTGATTTCAAATGCCAAGGTTCTAGAGTTTTTGATCGCCATTCTGAGGAGGGAAAATATGTTTGGTTTCATGATTTTGTGTATGATGGATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

310

Amino Acids

35.82

Weight (kDa)

6.7

Isoelectric Point (pI)

39.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33270
prunus_persica	Prupe.1G157900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0265521 RchiOBHm_Chr6g0265531
rosa_laevigata	RLG00000014182
rosa_multiflora	Rmu_co8123530.1_g000001 Rmu_co8387705.1_g000001 Rmu_sc0000217.1_g000007 Rmu_sc0000217.1_g000009 Rmu_sc0006004.1_g000006
rosa_roxburghii	Rroxscaffold_175G00432420 Rroxscaffold_175G00432440 Rroxscaffold_7G00202620 Rroxscaffold_7G00202640
rosa_rugosa	Rorug06G0017300
rosa_samantha	Rh6AG139500 Rh6AG139700 Rh6BG139100 Rh6BG139200 Rh6BG139600 Rh6CG136500 Rh6CG136600 Rh6CG136700 Rh6DG122700 Rh6DG123000
rosa_wichuraiana	Rw6G012010 Rw6G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	249
AarI	CACCTGC	1 cut(s)	791
Acc36I	ACCTGC	1 cut(s)	791
AccB7I	CCANNNNNTGG	1 cut(s)	571
AccI	GTMKAC	1 cut(s)	486
AclWI	GGATC	4 cut(s)	72, 87, 191, 499
AcsI	RAATTY	2 cut(s)	541, 610
AcuI	CTGAAG	2 cut(s)	288, 764
AfiI	CCNNNNNNNGG	2 cut(s)	571, 883
AflII	CTTAAG	1 cut(s)	686
AflIII	ACRYGT	1 cut(s)	430
AgsI	TTSAA	3 cut(s)	263, 311, 847
AhlI	ACTAGT	1 cut(s)	239
AjuI	GAANNNNNNNTTGG	2 cut(s)	883, 915
AluBI	AGCT	3 cut(s)	330, 440, 460
AluI	AGCT	3 cut(s)	330, 440, 460
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	4 cut(s)	72, 87, 191, 499
Ama87I	CYCGRG	1 cut(s)	5
AoxI	GGCC	1 cut(s)	595
ApeKI	GCWGC	4 cut(s)	27, 437, 656, 750
ApoI	RAATTY	2 cut(s)	541, 610
ArsI	GACNNNNNNTTYG	2 cut(s)	263, 295
AsuHPI	GGTGA	2 cut(s)	115, 815
AvaI	CYCGRG	1 cut(s)	5
BbsI	GAAGAC	1 cut(s)	276
BbvI	GCAGC	4 cut(s)	14, 449, 643, 737
BccI	CCATC	3 cut(s)	236, 344, 917
BcgI	CGANNNNNNTGC	2 cut(s)	638, 672
BciVI	GTATCC	1 cut(s)	920
BcoDI	GTCTC	1 cut(s)	221
BcuI	ACTAGT	1 cut(s)	239
BfaI	CTAG	2 cut(s)	240, 861
BfmI	CTRYAG	1 cut(s)	53
BfrI	CTTAAG	1 cut(s)	686
BfuAI	ACCTGC	1 cut(s)	791
BfuI	GTATCC	1 cut(s)	920
BisI	GCNGC	4 cut(s)	28, 438, 657, 751
BlsI	GCNGC	4 cut(s)	29, 439, 658, 752
BmeT110I	CYCGRG	1 cut(s)	5
BmsI	GCATC	4 cut(s)	643, 668, 763, 787
BpiI	GAAGAC	1 cut(s)	276
BsaJI	CCNNGG	1 cut(s)	853
BsaXI	ACNNNNNCTCC	2 cut(s)	530, 560
Bsc4I	CCNNNNNNNGG	2 cut(s)	571, 883
Bse1I	ACTGG	2 cut(s)	28, 278
BseDI	CCNNGG	1 cut(s)	853
BseGI	GGATG	3 cut(s)	160, 383, 778
BseLI	CCNNNNNNNGG	2 cut(s)	571, 883
BseMII	CTCAG	1 cut(s)	873
BseNI	ACTGG	2 cut(s)	28, 278
BseRI	GAGGAG	1 cut(s)	899
BseXI	GCAGC	4 cut(s)	14, 449, 643, 737
BshFI	GGCC	1 cut(s)	597
BsiHKCI	CYCGRG	1 cut(s)	5
BslI	CCNNNNNNNGG	2 cut(s)	571, 883
BsmAI	GTCTC	1 cut(s)	221
BsmI	GAATGC	1 cut(s)	344
BsnI	GGCC	1 cut(s)	597
BsoBI	CYCGRG	1 cut(s)	5
Bsp143I	GATC	6 cut(s)	64, 79, 196, 504, 714, 871
BspANI	GGCC	1 cut(s)	597
BspCNI	CTCAG	1 cut(s)	874
BspHI	TCATGA	2 cut(s)	699, 907
BspMAI	CTGCAG	1 cut(s)	57
BspMI	ACCTGC	1 cut(s)	791
BspPI	GGATC	4 cut(s)	72, 87, 191, 499
BspTI	CTTAAG	1 cut(s)	686
BsrI	ACTGG	2 cut(s)	28, 278
BssECI	CCNNGG	1 cut(s)	853
BssMI	GATC	6 cut(s)	64, 79, 196, 504, 714, 871
BssT1I	CCWWGG	1 cut(s)	853
Bst4CI	ACNGT	2 cut(s)	35, 638
Bst6I	CTCTTC	1 cut(s)	121
BstAFI	CTTAAG	1 cut(s)	686
BstC8I	GCNNGC	2 cut(s)	190, 474
BstDEI	CTNAG	1 cut(s)	882
BstF5I	GGATG	3 cut(s)	160, 383, 778
BstKTI	GATC	6 cut(s)	67, 82, 199, 507, 717, 874
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	6 cut(s)	64, 79, 196, 504, 714, 871
BstMWI	GCNNNNNNNGC	2 cut(s)	603, 662
BstNSI	RCATGY	1 cut(s)	434
BstSFI	CTRYAG	1 cut(s)	53
BstV1I	GCAGC	4 cut(s)	14, 449, 643, 737
BstV2I	GAAGAC	1 cut(s)	276
BsuI	GTATCC	1 cut(s)	920
BsuRI	GGCC	1 cut(s)	597
BtsCI	GGATG	3 cut(s)	160, 383, 778
BtsI	GCAGTG	2 cut(s)	143, 339
BtsIMutI	CAGTG	4 cut(s)	143, 339, 422, 844
BveI	ACCTGC	1 cut(s)	791
Cac8I	GCNNGC	2 cut(s)	190, 474
CciI	TCATGA	2 cut(s)	699, 907
CviAII	CATG	7 cut(s)	61, 151, 177, 431, 566, 700, 908
CviJI	RGCY	8 cut(s)	27, 192, 330, 397, 440, 460, 597, 750
CviKI_1	RGCY	8 cut(s)	27, 192, 330, 397, 440, 460, 597, 750
DdeI	CTNAG	1 cut(s)	882
DpnI	GATC	6 cut(s)	66, 81, 198, 506, 716, 873
DpnII	GATC	6 cut(s)	64, 79, 196, 504, 714, 871
DraI	TTTAAA	1 cut(s)	294
Eam1104I	CTCTTC	1 cut(s)	121
EarI	CTCTTC	1 cut(s)	121
Eco130I	CCWWGG	1 cut(s)	853
Eco147I	AGGCCT	1 cut(s)	597
Eco57I	CTGAAG	2 cut(s)	288, 764
Eco88I	CYCGRG	1 cut(s)	5
EcoT14I	CCWWGG	1 cut(s)	853
ErhI	CCWWGG	1 cut(s)	853
FaeI	CATG	7 cut(s)	64, 154, 180, 434, 569, 703, 911
FalI	AAGNNNNNCTT	2 cut(s)	177, 209
FatI	CATG	7 cut(s)	60, 150, 176, 430, 565, 699, 907
FblI	GTMKAC	1 cut(s)	486
Fnu4HI	GCNGC	4 cut(s)	28, 438, 657, 751
FokI	GGATG	3 cut(s)	167, 390, 785
Fsp4HI	GCNGC	4 cut(s)	28, 438, 657, 751
FspBI	CTAG	2 cut(s)	240, 861
GluI	GCNGC	4 cut(s)	28, 438, 657, 751
HaeIII	GGCC	1 cut(s)	597
Hin1II	CATG	7 cut(s)	64, 154, 180, 434, 569, 703, 911
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	3 cut(s)	140, 284, 318
HphI	GGTGA	2 cut(s)	115, 815
Hpy166II	GTNNAC	1 cut(s)	487
Hpy188I	TCNGA	4 cut(s)	125, 256, 820, 883
Hpy188III	TCNNGA	6 cut(s)	7, 498, 632, 700, 861, 908
Hpy8I	GTNNAC	1 cut(s)	487
HpyAV	CCTTC	3 cut(s)	4, 608, 739
HpyCH4III	ACNGT	2 cut(s)	35, 638
HpyF10VI	GCNNNNNNNGC	2 cut(s)	603, 662
HpyF3I	CTNAG	1 cut(s)	882
Hsp92II	CATG	7 cut(s)	64, 154, 180, 434, 569, 703, 911
Kzo9I	GATC	6 cut(s)	64, 79, 196, 504, 714, 871
Lsp1109I	GCAGC	4 cut(s)	14, 449, 643, 737
LweI	GCATC	4 cut(s)	643, 668, 763, 787
MaeI	CTAG	2 cut(s)	240, 861
MaeIII	GTNAC	1 cut(s)	141
MalI	GATC	6 cut(s)	66, 81, 198, 506, 716, 873
MboI	GATC	6 cut(s)	64, 79, 196, 504, 714, 871
MboII	GAAGA	4 cut(s)	138, 281, 662, 715
MfeI	CAATTG	1 cut(s)	666
MluCI	AATT	7 cut(s)	250, 541, 610, 666, 727, 737, 781
MlyI	GAGTC	1 cut(s)	149
MmeI	TCCRAC	2 cut(s)	66, 103
MnlI	CCTC	5 cut(s)	37, 122, 459, 877, 880
MseI	TTAA	5 cut(s)	293, 548, 687, 726, 735
MslI	CAYNNNNRTG	2 cut(s)	698, 837
MspCI	CTTAAG	1 cut(s)	686
MunI	CAATTG	1 cut(s)	666
Mva1269I	GAATGC	1 cut(s)	344
MwoI	GCNNNNNNNGC	2 cut(s)	603, 662
NdeII	GATC	6 cut(s)	64, 79, 196, 504, 714, 871
NlaIII	CATG	7 cut(s)	64, 154, 180, 434, 569, 703, 911
NmuCI	GTSAC	1 cut(s)	141
NspI	RCATGY	1 cut(s)	434
PaeR7I	CTCGAG	1 cut(s)	5
PagI	TCATGA	2 cut(s)	699, 907
PaqCI	CACCTGC	1 cut(s)	791
PceI	AGGCCT	1 cut(s)	597
PciI	ACATGT	1 cut(s)	430
PctI	GAATGC	1 cut(s)	344
PfeI	GAWTC	2 cut(s)	284, 318
PflMI	CCANNNNNTGG	1 cut(s)	571
PkrI	GCNGC	4 cut(s)	29, 439, 658, 752
PleI	GAGTC	1 cut(s)	148
PpsI	GAGTC	1 cut(s)	148
PscI	ACATGT	1 cut(s)	430
PsiI	TTATAA	1 cut(s)	249
PstI	CTGCAG	1 cut(s)	57
RseI	CAYNNNNRTG	2 cut(s)	698, 837
SaqAI	TTAA	5 cut(s)	293, 548, 687, 726, 735
SatI	GCNGC	4 cut(s)	28, 438, 657, 751
Sau3AI	GATC	6 cut(s)	64, 79, 196, 504, 714, 871
SchI	GAGTC	1 cut(s)	149
SetI	ASST	7 cut(s)	133, 332, 403, 442, 462, 805, 859
SfaNI	GCATC	4 cut(s)	643, 668, 763, 787
SfcI	CTRYAG	1 cut(s)	53
Sfr274I	CTCGAG	1 cut(s)	5
SlaI	CTCGAG	1 cut(s)	5
SmiMI	CAYNNNNRTG	2 cut(s)	698, 837
SmlI	CTYRAG	2 cut(s)	5, 686
SmoI	CTYRAG	2 cut(s)	5, 686
SpeI	ACTAGT	1 cut(s)	239
Sse9I	AATT	7 cut(s)	250, 541, 610, 666, 727, 737, 781
SseBI	AGGCCT	1 cut(s)	597
SspMI	CTAG	2 cut(s)	240, 861
StuI	AGGCCT	1 cut(s)	597
StyI	CCWWGG	1 cut(s)	853
TaaI	ACNGT	2 cut(s)	35, 638
TaqI	TCGA	3 cut(s)	6, 717, 795
TasI	AATT	7 cut(s)	250, 541, 610, 666, 727, 737, 781
TfiI	GAWTC	2 cut(s)	284, 318
Tru1I	TTAA	5 cut(s)	293, 548, 687, 726, 735
Tru9I	TTAA	5 cut(s)	293, 548, 687, 726, 735
TscAI	CASTG	4 cut(s)	150, 346, 429, 844
TseFI	GTSAC	1 cut(s)	141
TseI	GCWGC	4 cut(s)	27, 437, 656, 750
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	5 cut(s)	49, 337, 688, 716, 896
TspRI	CASTG	4 cut(s)	150, 346, 429, 844
Van91I	CCANNNNNTGG	1 cut(s)	571
Vha464I	CTTAAG	1 cut(s)	686
XapI	RAATTY	2 cut(s)	541, 610
XbaI	TCTAGA	1 cut(s)	860
XceI	RCATGY	1 cut(s)	434
XhoI	CTCGAG	1 cut(s)	5
XmiI	GTMKAC	1 cut(s)	486
XspI	CTAG	2 cut(s)	240, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.