Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006396

Physical Location & Seq

Genomic Coordinates Forward (+)

21773614 .. 21774688

Gene Structure 1075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G012020.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGTCAATCGTAGCAAAGGATGTGCTAATGAAATCAGGCTACCTGTGTGCGCTTCAGAAGAAGCGCTGAAACATGTTGCAGCTTCGTGTCCTCGCCTAAAGAATTTCTCTTTGCCTGCTGATATAGTCTACTATAAATCAAGAATGATCCCTGATATGATTGGCAAGTGGAAAGATTTGGAGAATTTGTTAATGGGAAGCTGCTACCATGATATGGAGAAAATCATTTCACAAATAGGCCTTCACTGTAAGAATTTCTATTTCTTACGTATTCCTGATTGTCTGGTTTGTGAAGATGCAGCATCGGCAATTGCAAAGTTGCCTAATCTTAAGCACATATTCATGAAGAACACAAAGATTGAACGGGTTAATTTTGTTAAATTACCGAAGGGCTGCAAAAATCTTGTGTCATTGGATGCCAGAAATTGTCTTGGTTTCGATGCAGGTGATGAGGAAATATCAGAACTTTCTTCTCACATCAGTGATTTCAAATGCCATGGTTCTAGAGTTTTTGATCGCCACTCTCAGGAGGGAAAATATGTTTGGTTTCATGATTTTGTGTACGATGGATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

191

Amino Acids

21.81

Weight (kDa)

8.01

Isoelectric Point (pI)

41.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006396)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g33270
prunus_persica	Prupe.1G157900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr6g0265521 RchiOBHm_Chr6g0265531
rosa_laevigata	RLG00000014182
rosa_multiflora	Rmu_co8123530.1_g000001 Rmu_co8387705.1_g000001 Rmu_sc0000217.1_g000007 Rmu_sc0000217.1_g000009 Rmu_sc0006004.1_g000006
rosa_roxburghii	Rroxscaffold_175G00432420 Rroxscaffold_175G00432440 Rroxscaffold_7G00202620 Rroxscaffold_7G00202640
rosa_rugosa	Rorug06G0017300
rosa_samantha	Rh6AG139500 Rh6AG139700 Rh6BG139100 Rh6BG139200 Rh6BG139600 Rh6CG136500 Rh6CG136600 Rh6CG136700 Rh6DG122700 Rh6DG123000
rosa_wichuraiana	Rw6G012010 Rw6G012020

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	434
Acc36I	ACCTGC	1 cut(s)	434
AccB7I	CCANNNNNTGG	1 cut(s)	214
AccI	GTMKAC	1 cut(s)	129
AclWI	GGATC	1 cut(s)	142
AcsI	RAATTY	3 cut(s)	103, 184, 253
AcuI	CTGAAG	1 cut(s)	39
AfaI	GTAC	1 cut(s)	563
AfeI	AGCGCT	1 cut(s)	66
AfiI	CCNNNNNNNGG	2 cut(s)	214, 526
AflII	CTTAAG	1 cut(s)	329
AflIII	ACRYGT	1 cut(s)	73
AgsI	TTSAA	2 cut(s)	362, 490
AjuI	GAANNNNNNNTTGG	2 cut(s)	526, 558
AleI	CACNNNNGTG	1 cut(s)	480
AluBI	AGCT	2 cut(s)	83, 201
AluI	AGCT	2 cut(s)	83, 201
AlwI	GGATC	1 cut(s)	142
Aor51HI	AGCGCT	1 cut(s)	66
AoxI	GGCC	1 cut(s)	238
ApeKI	GCWGC	4 cut(s)	80, 201, 299, 393
ApoI	RAATTY	3 cut(s)	103, 184, 253
AspLEI	GCGC	2 cut(s)	53, 67
AsuHPI	GGTGA	1 cut(s)	458
BbvI	GCAGC	4 cut(s)	92, 188, 311, 380
BccI	CCATC	1 cut(s)	560
BciVI	GTATCC	1 cut(s)	563
BfaI	CTAG	1 cut(s)	504
BfoI	RGCGCY	1 cut(s)	68
BfrI	CTTAAG	1 cut(s)	329
BfuAI	ACCTGC	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	563
BisI	GCNGC	4 cut(s)	81, 202, 300, 394
BlsI	GCNGC	4 cut(s)	82, 203, 301, 395
BmsI	GCATC	4 cut(s)	286, 311, 406, 430
BsaAI	YACGTR	1 cut(s)	269
BsaJI	CCNNGG	1 cut(s)	496
BsaXI	ACNNNNNCTCC	2 cut(s)	173, 203
Bsc4I	CCNNNNNNNGG	2 cut(s)	214, 526
BseDI	CCNNGG	1 cut(s)	496
BseGI	GGATG	2 cut(s)	26, 421
BseLI	CCNNNNNNNGG	2 cut(s)	214, 526
BseMII	CTCAG	1 cut(s)	539
BseXI	GCAGC	4 cut(s)	92, 188, 311, 380
BshFI	GGCC	1 cut(s)	240
BslI	CCNNNNNNNGG	2 cut(s)	214, 526
BsnI	GGCC	1 cut(s)	240
Bsp143I	GATC	2 cut(s)	147, 514
Bsp19I	CCATGG	1 cut(s)	496
BspANI	GGCC	1 cut(s)	240
BspCNI	CTCAG	1 cut(s)	538
BspHI	TCATGA	2 cut(s)	342, 550
BspMI	ACCTGC	1 cut(s)	434
BspPI	GGATC	1 cut(s)	142
BspTI	CTTAAG	1 cut(s)	329
BssECI	CCNNGG	1 cut(s)	496
BssMI	GATC	2 cut(s)	147, 514
BssT1I	CCWWGG	1 cut(s)	496
Bst4CI	ACNGT	1 cut(s)	248
BstAFI	CTTAAG	1 cut(s)	329
BstBAI	YACGTR	1 cut(s)	269
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	1 cut(s)	525
BstDSI	CCRYGG	1 cut(s)	496
BstF5I	GGATG	2 cut(s)	26, 421
BstH2I	RGCGCY	1 cut(s)	68
BstHHI	GCGC	2 cut(s)	53, 67
BstKTI	GATC	2 cut(s)	150, 517
BstMBI	GATC	2 cut(s)	147, 514
BstMWI	GCNNNNNNNGC	1 cut(s)	305
BstNSI	RCATGY	1 cut(s)	77
BstSNI	TACGTA	1 cut(s)	269
BstV1I	GCAGC	4 cut(s)	92, 188, 311, 380
BsuI	GTATCC	1 cut(s)	563
BsuRI	GGCC	1 cut(s)	240
BtgI	CCRYGG	1 cut(s)	496
BtsCI	GGATG	2 cut(s)	26, 421
BtsIMutI	CAGTG	2 cut(s)	244, 487
BveI	ACCTGC	1 cut(s)	434
Cac8I	GCNNGC	1 cut(s)	117
CciI	TCATGA	2 cut(s)	342, 550
CfoI	GCGC	2 cut(s)	53, 67
Csp6I	GTAC	1 cut(s)	562
CviAII	CATG	5 cut(s)	74, 209, 343, 497, 551
CviJI	RGCY	5 cut(s)	40, 83, 201, 240, 393
CviKI_1	RGCY	5 cut(s)	40, 83, 201, 240, 393
CviQI	GTAC	1 cut(s)	562
DdeI	CTNAG	1 cut(s)	525
DpnI	GATC	2 cut(s)	149, 516
DpnII	GATC	2 cut(s)	147, 514
Eco105I	TACGTA	1 cut(s)	269
Eco130I	CCWWGG	1 cut(s)	496
Eco147I	AGGCCT	1 cut(s)	240
Eco47III	AGCGCT	1 cut(s)	66
Eco57I	CTGAAG	1 cut(s)	39
EcoT14I	CCWWGG	1 cut(s)	496
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	5 cut(s)	77, 212, 346, 500, 554
FatI	CATG	5 cut(s)	73, 208, 342, 496, 550
FblI	GTMKAC	1 cut(s)	129
Fnu4HI	GCNGC	4 cut(s)	81, 202, 300, 394
FokI	GGATG	2 cut(s)	33, 428
Fsp4HI	GCNGC	4 cut(s)	81, 202, 300, 394
FspBI	CTAG	1 cut(s)	504
GlaI	GCGC	2 cut(s)	52, 66
GluI	GCNGC	4 cut(s)	81, 202, 300, 394
HaeII	RGCGCY	1 cut(s)	68
HaeIII	GGCC	1 cut(s)	240
HhaI	GCGC	2 cut(s)	53, 67
Hin1II	CATG	5 cut(s)	77, 212, 346, 500, 554
Hin6I	GCGC	2 cut(s)	51, 65
HinP1I	GCGC	2 cut(s)	51, 65
HphI	GGTGA	1 cut(s)	458
Hpy166II	GTNNAC	2 cut(s)	130, 562
Hpy188I	TCNGA	2 cut(s)	58, 463
Hpy188III	TCNNGA	6 cut(s)	141, 275, 343, 504, 527, 551
Hpy8I	GTNNAC	2 cut(s)	130, 562
HpyAV	CCTTC	2 cut(s)	251, 382
HpyCH4III	ACNGT	1 cut(s)	248
HpyCH4IV	ACGT	1 cut(s)	268
HpyCH4V	TGCA	5 cut(s)	80, 299, 314, 396, 443
HpyF10VI	GCNNNNNNNGC	1 cut(s)	305
HpyF3I	CTNAG	1 cut(s)	525
HpySE526I	ACGT	1 cut(s)	268
Hsp92II	CATG	5 cut(s)	77, 212, 346, 500, 554
HspAI	GCGC	2 cut(s)	51, 65
Kzo9I	GATC	2 cut(s)	147, 514
LpnPI	CCDG	9 cut(s)	22, 57, 129, 165, 269, 288, 429, 433, 512
Lsp1109I	GCAGC	4 cut(s)	92, 188, 311, 380
LweI	GCATC	4 cut(s)	286, 311, 406, 430
MaeI	CTAG	1 cut(s)	504
MaeII	ACGT	1 cut(s)	268
MalI	GATC	2 cut(s)	149, 516
MboI	GATC	2 cut(s)	147, 514
MboII	GAAGA	4 cut(s)	71, 305, 358, 462
MfeI	CAATTG	1 cut(s)	309
MluCI	AATT	7 cut(s)	103, 184, 253, 309, 370, 380, 424
MnlI	CCTC	3 cut(s)	102, 445, 523
MseI	TTAA	4 cut(s)	191, 330, 369, 378
MslI	CAYNNNNRTG	2 cut(s)	341, 480
MspCI	CTTAAG	1 cut(s)	329
MunI	CAATTG	1 cut(s)	309
MwoI	GCNNNNNNNGC	1 cut(s)	305
NcoI	CCATGG	1 cut(s)	496
NdeII	GATC	2 cut(s)	147, 514
NlaIII	CATG	5 cut(s)	77, 212, 346, 500, 554
NspI	RCATGY	1 cut(s)	77
OliI	CACNNNNGTG	1 cut(s)	480
PagI	TCATGA	2 cut(s)	342, 550
PaqCI	CACCTGC	1 cut(s)	434
PceI	AGGCCT	1 cut(s)	240
PciI	ACATGT	1 cut(s)	73
PflMI	CCANNNNNTGG	1 cut(s)	214
PkrI	GCNGC	4 cut(s)	82, 203, 301, 395
Ppu21I	YACGTR	1 cut(s)	269
PscI	ACATGT	1 cut(s)	73
RsaI	GTAC	1 cut(s)	563
RsaNI	GTAC	1 cut(s)	562
RseI	CAYNNNNRTG	2 cut(s)	341, 480
SaqAI	TTAA	4 cut(s)	191, 330, 369, 378
SatI	GCNGC	4 cut(s)	81, 202, 300, 394
Sau3AI	GATC	2 cut(s)	147, 514
SetI	ASST	5 cut(s)	46, 85, 203, 271, 448
SfaNI	GCATC	4 cut(s)	286, 311, 406, 430
SmiMI	CAYNNNNRTG	2 cut(s)	341, 480
SmlI	CTYRAG	1 cut(s)	329
SmoI	CTYRAG	1 cut(s)	329
SnaBI	TACGTA	1 cut(s)	269
Sse9I	AATT	7 cut(s)	103, 184, 253, 309, 370, 380, 424
SseBI	AGGCCT	1 cut(s)	240
SspMI	CTAG	1 cut(s)	504
StuI	AGGCCT	1 cut(s)	240
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	1 cut(s)	248
TaiI	ACGT	1 cut(s)	271
TaqI	TCGA	1 cut(s)	438
TasI	AATT	7 cut(s)	103, 184, 253, 309, 370, 380, 424
Tru1I	TTAA	4 cut(s)	191, 330, 369, 378
Tru9I	TTAA	4 cut(s)	191, 330, 369, 378
TscAI	CASTG	2 cut(s)	251, 487
TseI	GCWGC	4 cut(s)	80, 201, 299, 393
TspDTI	ATGAA	4 cut(s)	45, 331, 359, 539
TspRI	CASTG	2 cut(s)	251, 487
Van91I	CCANNNNNTGG	1 cut(s)	214
Vha464I	CTTAAG	1 cut(s)	329
XapI	RAATTY	3 cut(s)	103, 184, 253
XbaI	TCTAGA	1 cut(s)	503
XceI	RCATGY	1 cut(s)	77
XmiI	GTMKAC	1 cut(s)	129
XspI	CTAG	1 cut(s)	504

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.